HEADER HYDROLASE/ANTIBIOTIC 26-JAN-15 4XUZ TITLE STRUCTURE OF CTX-M-15 BOUND TO RPX-7009 AT 1.5 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 29-291; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 72407; SOURCE 4 GENE: BLACTX-M-15, KPNIH31_23215; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.C.CLIFTON,A.GARDBERG REVDAT 3 27-SEP-23 4XUZ 1 COMPND SOURCE JRNL REMARK REVDAT 3 2 1 HETNAM HETSYN REVDAT 2 27-MAY-15 4XUZ 1 JRNL REVDAT 1 01-APR-15 4XUZ 0 JRNL AUTH S.J.HECKER,K.R.REDDY,M.TOTROV,G.C.HIRST,O.LOMOVSKAYA, JRNL AUTH 2 D.C.GRIFFITH,P.KING,R.TSIVKOVSKI,D.SUN,M.SABET,Z.TARAZI, JRNL AUTH 3 M.C.CLIFTON,K.ATKINS,A.RAYMOND,K.T.POTTS,J.ABENDROTH, JRNL AUTH 4 S.H.BOYER,J.S.LOUTIT,E.E.MORGAN,S.DURSO,M.N.DUDLEY JRNL TITL DISCOVERY OF A CYCLIC BORONIC ACID BETA-LACTAMASE INHIBITOR JRNL TITL 2 (RPX7009) WITH UTILITY VS CLASS A SERINE CARBAPENEMASES. JRNL REF J.MED.CHEM. V. 58 3682 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25782055 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00127 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 38972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1947 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2482 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.1890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1947 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.599 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2090 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1425 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2830 ; 1.342 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3484 ; 0.799 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 6.457 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;36.251 ;24.177 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 342 ;12.462 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.839 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 330 ; 0.550 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2310 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 391 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): 39.4773 34.7135 16.9222 REMARK 3 T TENSOR REMARK 3 T11: 0.0046 T22: 0.0135 REMARK 3 T33: 0.0014 T12: -0.0026 REMARK 3 T13: -0.0004 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.1989 L22: 0.5572 REMARK 3 L33: 0.1114 L12: -0.0410 REMARK 3 L13: -0.0264 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.0041 S13: -0.0083 REMARK 3 S21: -0.0416 S22: 0.0119 S23: 0.0166 REMARK 3 S31: -0.0056 S32: 0.0124 S33: -0.0063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000206342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38972 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.12800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IYS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MG/ML CTX-M-15, 2.0M AMMONIUM REMARK 280 CITRATE TRIBASIC, PH 7.0, 0.1M BIS-TRIS PROPANE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.42000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.42500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.42500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.42000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLN A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 247 O HOH A 645 2.06 REMARK 500 O HOH A 621 O HOH A 700 2.07 REMARK 500 O HOH A 467 O HOH A 698 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 44 -141.04 50.63 REMARK 500 VAL A 78 -138.80 -126.04 REMARK 500 SER A 195 -124.72 -105.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 671 DISTANCE = 5.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4D6 A 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XUX RELATED DB: PDB DBREF 4XUZ A 1 263 UNP S5LVN3 S5LVN3_KLEPN 29 291 SEQADV 4XUZ GLY A -1 UNP S5LVN3 EXPRESSION TAG SEQADV 4XUZ SER A 0 UNP S5LVN3 EXPRESSION TAG SEQRES 1 A 265 GLY SER GLN THR ALA ASP VAL GLN GLN LYS LEU ALA GLU SEQRES 2 A 265 LEU GLU ARG GLN SER GLY GLY ARG LEU GLY VAL ALA LEU SEQRES 3 A 265 ILE ASN THR ALA ASP ASN SER GLN ILE LEU TYR ARG ALA SEQRES 4 A 265 ASP GLU ARG PHE ALA MET CYS SER THR SER LYS VAL MET SEQRES 5 A 265 ALA ALA ALA ALA VAL LEU LYS LYS SER GLU SER GLU PRO SEQRES 6 A 265 ASN LEU LEU ASN GLN ARG VAL GLU ILE LYS LYS SER ASP SEQRES 7 A 265 LEU VAL ASN TYR ASN PRO ILE ALA GLU LYS HIS VAL ASN SEQRES 8 A 265 GLY THR MET SER LEU ALA GLU LEU SER ALA ALA ALA LEU SEQRES 9 A 265 GLN TYR SER ASP ASN VAL ALA MET ASN LYS LEU ILE ALA SEQRES 10 A 265 HIS VAL GLY GLY PRO ALA SER VAL THR ALA PHE ALA ARG SEQRES 11 A 265 GLN LEU GLY ASP GLU THR PHE ARG LEU ASP ARG THR GLU SEQRES 12 A 265 PRO THR LEU ASN THR ALA ILE PRO GLY ASP PRO ARG ASP SEQRES 13 A 265 THR THR SER PRO ARG ALA MET ALA GLN THR LEU ARG ASN SEQRES 14 A 265 LEU THR LEU GLY LYS ALA LEU GLY ASP SER GLN ARG ALA SEQRES 15 A 265 GLN LEU VAL THR TRP MET LYS GLY ASN THR THR GLY ALA SEQRES 16 A 265 ALA SER ILE GLN ALA GLY LEU PRO ALA SER TRP VAL VAL SEQRES 17 A 265 GLY ASP LYS THR GLY SER GLY GLY TYR GLY THR THR ASN SEQRES 18 A 265 ASP ILE ALA VAL ILE TRP PRO LYS ASP ARG ALA PRO LEU SEQRES 19 A 265 ILE LEU VAL THR TYR PHE THR GLN PRO GLN PRO LYS ALA SEQRES 20 A 265 GLU SER ARG ARG ASP VAL LEU ALA SER ALA ALA LYS ILE SEQRES 21 A 265 VAL THR ASP GLY LEU HET CL A 301 1 HET CIT A 302 13 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 8 HET EDO A 311 4 HET 4D6 A 312 40 HETNAM CL CHLORIDE ION HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM 4D6 VABORBACTAM HETSYN EDO ETHYLENE GLYCOL HETSYN 4D6 {(3R,6S)-2-HYDROXY-3-[(THIOPHEN-2-YLACETYL)AMINO]-1,2- HETSYN 2 4D6 OXABORINAN-6-YL}ACETIC ACID; 2-((3R,6S)-2-HYDROXY-3- HETSYN 3 4D6 (2-(THIOPHEN-2-YL)ACETAMIDO)-1,2-OXABORINAN-6-YL) HETSYN 4 4D6 ACETIC ACID; 2-[(3R,6S)-2-HYDROXY-3-[(2-THIOPHEN-2- HETSYN 5 4D6 YLACETYL)AMINO]OXABORINAN-6-YL]ACETIC ACID; 1,2- HETSYN 6 4D6 OXABORINANE-6-ACETIC ACID, 2-HYDROXY-3-((2-(2- HETSYN 7 4D6 THIENYL)ACETYL)AMINO)-, (3R,6S)- FORMUL 2 CL CL 1- FORMUL 3 CIT C6 H8 O7 FORMUL 4 EDO 9(C2 H6 O2) FORMUL 13 4D6 C12 H16 B N O5 S FORMUL 14 HOH *312(H2 O) HELIX 1 AA1 THR A 2 GLY A 17 1 16 HELIX 2 AA2 CYS A 44 THR A 46 5 3 HELIX 3 AA3 SER A 47 GLU A 60 1 14 HELIX 4 AA4 ASN A 64 ASN A 67 5 4 HELIX 5 AA5 LYS A 73 LEU A 77 5 5 HELIX 6 AA6 ILE A 83 VAL A 88 5 6 HELIX 7 AA7 LEU A 94 SER A 105 1 12 HELIX 8 AA8 ASP A 106 GLY A 118 1 13 HELIX 9 AA9 GLY A 119 GLY A 131 1 13 HELIX 10 AB1 PRO A 142 THR A 146 5 5 HELIX 11 AB2 SER A 157 LEU A 170 1 14 HELIX 12 AB3 GLY A 175 GLY A 188 1 14 HELIX 13 AB4 SER A 195 LEU A 200 5 6 HELIX 14 AB5 ARG A 248 ASP A 261 1 14 SHEET 1 AA1 5 SER A 31 TYR A 35 0 SHEET 2 AA1 5 ARG A 19 ASN A 26 -1 N LEU A 24 O ILE A 33 SHEET 3 AA1 5 LEU A 232 THR A 239 -1 O TYR A 237 N GLY A 21 SHEET 4 AA1 5 THR A 217 TRP A 225 -1 N ILE A 224 O LEU A 232 SHEET 5 AA1 5 VAL A 205 GLY A 213 -1 N VAL A 205 O TRP A 225 SHEET 1 AA2 2 PHE A 41 ALA A 42 0 SHEET 2 AA2 2 THR A 155 THR A 156 -1 O THR A 156 N PHE A 41 SHEET 1 AA3 2 ARG A 69 GLU A 71 0 SHEET 2 AA3 2 THR A 91 SER A 93 -1 O MET A 92 N VAL A 70 LINK OG SER A 45 B15A4D6 A 312 1555 1555 1.48 LINK OG SER A 45 B15B4D6 A 312 1555 1555 1.51 CISPEP 1 GLU A 141 PRO A 142 0 9.32 SITE 1 AC1 4 PRO A 201 ALA A 202 PRO A 243 LYS A 244 SITE 1 AC2 10 LYS A 73 SER A 75 ARG A 128 LYS A 172 SITE 2 AC2 10 HOH A 419 HOH A 472 HOH A 484 HOH A 485 SITE 3 AC2 10 HOH A 510 HOH A 589 SITE 1 AC3 6 SER A 75 ARG A 166 LEU A 170 HOH A 436 SITE 2 AC3 6 HOH A 437 HOH A 447 SITE 1 AC4 4 ALA A 54 HOH A 405 HOH A 418 HOH A 433 SITE 1 AC5 7 LEU A 66 SER A 177 GLN A 178 GLN A 181 SITE 2 AC5 7 HOH A 404 HOH A 430 HOH A 438 SITE 1 AC6 6 GLU A 13 GLY A 18 ARG A 19 ARG A 36 SITE 2 AC6 6 HOH A 409 HOH A 634 SITE 1 AC7 8 ILE A 25 ASN A 30 GLN A 32 SER A 122 SITE 2 AC7 8 GLN A 163 ARG A 166 HOH A 418 HOH A 433 SITE 1 AC8 6 LEU A 34 ARG A 36 ALA A 37 ASP A 38 SITE 2 AC8 6 HOH A 587 HOH A 689 SITE 1 AC9 8 ASP A 38 LYS A 58 GLU A 62 LEU A 65 SITE 2 AC9 8 GLN A 68 HIS A 116 ARG A 159 HOH A 429 SITE 1 AD1 8 ARG A 19 ARG A 40 PRO A 149 GLY A 150 SITE 2 AD1 8 ASP A 151 HOH A 588 HOH A 600 HOH A 691 SITE 1 AD2 9 ALA A 28 ASN A 111 GLN A 129 THR A 140 SITE 2 AD2 9 GLU A 141 HOH A 414 HOH A 416 HOH A 491 SITE 3 AD2 9 HOH A 534 SITE 1 AD3 14 ARG A 14 CYS A 44 SER A 45 ASN A 79 SITE 2 AD3 14 SER A 105 ASN A 107 PRO A 142 ASN A 145 SITE 3 AD3 14 LYS A 209 THR A 210 GLY A 211 SER A 212 SITE 4 AD3 14 GLY A 214 HOH A 403 CRYST1 44.840 45.810 116.850 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008558 0.00000