HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-JAN-15 4XV2 TITLE B-RAF KINASE V600E ONCOGENIC MUTANT IN COMPLEX WITH DABRAFENIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 444-705; COMPND 5 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 6 HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS B-RAF, BRAF, PROTO-ONCOGENE, V600E, KINASE, TRANSFERASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,C.ZHANG REVDAT 3 28-FEB-24 4XV2 1 JRNL REMARK REVDAT 2 04-NOV-15 4XV2 1 JRNL REVDAT 1 28-OCT-15 4XV2 0 JRNL AUTH C.ZHANG,W.SPEVAK,Y.ZHANG,E.A.BURTON,Y.MA,G.HABETS,J.ZHANG, JRNL AUTH 2 J.LIN,T.EWING,B.MATUSOW,G.TSANG,A.MARIMUTHU,H.CHO,G.WU, JRNL AUTH 3 W.WANG,D.FONG,H.NGUYEN,S.SHI,P.WOMACK,M.NESPI,R.SHELLOOE, JRNL AUTH 4 H.CARIAS,B.POWELL,E.LIGHT,L.SANFTNER,J.WALTERS,J.TSAI, JRNL AUTH 5 B.L.WEST,G.VISOR,H.REZAEI,P.S.LIN,K.NOLOP,P.N.IBRAHIM, JRNL AUTH 6 P.HIRTH,G.BOLLAG JRNL TITL RAF INHIBITORS THAT EVADE PARADOXICAL MAPK PATHWAY JRNL TITL 2 ACTIVATION. JRNL REF NATURE V. 526 583 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26466569 JRNL DOI 10.1038/NATURE14982 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.8650 - 4.9989 1.00 2796 152 0.2160 0.2519 REMARK 3 2 4.9989 - 3.9682 1.00 2664 144 0.1801 0.1962 REMARK 3 3 3.9682 - 3.4667 1.00 2663 130 0.1974 0.2437 REMARK 3 4 3.4667 - 3.1497 1.00 2611 139 0.2051 0.2447 REMARK 3 5 3.1497 - 2.9240 1.00 2616 150 0.2265 0.2579 REMARK 3 6 2.9240 - 2.7516 1.00 2596 148 0.2550 0.3062 REMARK 3 7 2.7516 - 2.6138 1.00 2586 142 0.2642 0.3043 REMARK 3 8 2.6138 - 2.5000 1.00 2603 123 0.2815 0.2996 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 47.58 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.26670 REMARK 3 B22 (A**2) : -7.02730 REMARK 3 B33 (A**2) : -4.23940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4126 REMARK 3 ANGLE : 0.737 5566 REMARK 3 CHIRALITY : 0.055 592 REMARK 3 PLANARITY : 0.004 704 REMARK 3 DIHEDRAL : 14.540 1558 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 449:720 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4403 -13.3113 -19.2223 REMARK 3 T TENSOR REMARK 3 T11: 0.3285 T22: 0.3061 REMARK 3 T33: 0.3024 T12: -0.0479 REMARK 3 T13: -0.0193 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.7427 L22: 6.2547 REMARK 3 L33: 3.9506 L12: -0.5449 REMARK 3 L13: -0.4682 L23: 2.7399 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: 0.0365 S13: -0.3618 REMARK 3 S21: 0.5493 S22: -0.0245 S23: -0.1486 REMARK 3 S31: 0.4846 S32: -0.0320 S33: 0.0385 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 448:720 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7577 7.9485 5.5081 REMARK 3 T TENSOR REMARK 3 T11: 0.3871 T22: 0.4416 REMARK 3 T33: 0.2500 T12: 0.0811 REMARK 3 T13: 0.0344 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 3.6207 L22: 4.8358 REMARK 3 L33: 4.1836 L12: 2.2658 REMARK 3 L13: 0.9079 L23: 1.1296 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: -0.4891 S13: -0.0371 REMARK 3 S21: 0.3213 S22: -0.2003 S23: -0.0606 REMARK 3 S31: 0.3440 S32: -0.0670 S33: 0.2063 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 801:801 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5092 -3.2835 -20.7253 REMARK 3 T TENSOR REMARK 3 T11: 0.3636 T22: 0.4194 REMARK 3 T33: 0.2711 T12: 0.0011 REMARK 3 T13: 0.0513 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.0576 L22: 3.4588 REMARK 3 L33: 2.7440 L12: 0.8256 REMARK 3 L13: 1.7006 L23: 1.5510 REMARK 3 S TENSOR REMARK 3 S11: 0.5433 S12: -0.0539 S13: -0.3070 REMARK 3 S21: -0.0754 S22: -0.1060 S23: -0.2429 REMARK 3 S31: 0.0649 S32: -0.1633 S33: -0.3565 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 801:801 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9137 -0.9333 6.1428 REMARK 3 T TENSOR REMARK 3 T11: 0.5012 T22: 0.5564 REMARK 3 T33: 0.2160 T12: 0.0473 REMARK 3 T13: 0.0268 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 1.3180 L22: 2.8541 REMARK 3 L33: 3.6726 L12: 0.7945 REMARK 3 L13: -0.9801 L23: 2.0533 REMARK 3 S TENSOR REMARK 3 S11: 0.2904 S12: -0.0502 S13: 0.0294 REMARK 3 S21: -0.1245 S22: 0.3059 S23: -0.0906 REMARK 3 S31: 0.3893 S32: 0.1840 S33: -0.5266 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 76.114 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BISTRIS AT PH 6.0, 12.5% 2,5- REMARK 280 HEXABEDIOL, 12% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.84450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.86550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.83300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.86550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.84450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.83300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 432 REMARK 465 LYS A 433 REMARK 465 LYS A 434 REMARK 465 GLY A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 GLY A 442 REMARK 465 SER A 443 REMARK 465 ARG A 444 REMARK 465 ASP A 445 REMARK 465 ALA A 446 REMARK 465 ALA A 447 REMARK 465 ASP A 448 REMARK 465 THR A 488 REMARK 465 ALA A 489 REMARK 465 LEU A 597 REMARK 465 ALA A 598 REMARK 465 THR A 599 REMARK 465 GLU A 600 REMARK 465 LYS A 601 REMARK 465 SER A 602 REMARK 465 ARG A 603 REMARK 465 TRP A 604 REMARK 465 SER A 605 REMARK 465 GLY A 606 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 LEU A 613 REMARK 465 SER A 614 REMARK 465 MET A 627 REMARK 465 GLN A 628 REMARK 465 ASP A 629 REMARK 465 SER A 630 REMARK 465 ASN A 631 REMARK 465 LEU A 721 REMARK 465 SER A 722 REMARK 465 GLY A 723 REMARK 465 MET B 432 REMARK 465 LYS B 433 REMARK 465 LYS B 434 REMARK 465 GLY B 435 REMARK 465 HIS B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 465 HIS B 439 REMARK 465 HIS B 440 REMARK 465 HIS B 441 REMARK 465 GLY B 442 REMARK 465 SER B 443 REMARK 465 ARG B 444 REMARK 465 ASP B 445 REMARK 465 ALA B 446 REMARK 465 ALA B 447 REMARK 465 THR B 546 REMARK 465 LYS B 547 REMARK 465 LEU B 597 REMARK 465 ALA B 598 REMARK 465 THR B 599 REMARK 465 GLU B 600 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 SER B 614 REMARK 465 MET B 627 REMARK 465 GLN B 628 REMARK 465 ASP B 629 REMARK 465 SER B 630 REMARK 465 LEU B 721 REMARK 465 SER B 722 REMARK 465 GLY B 723 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 LYS B 522 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 476 93.44 -168.99 REMARK 500 ASN A 486 80.13 -65.06 REMARK 500 ARG A 575 -8.24 74.38 REMARK 500 ASP A 576 36.83 -153.59 REMARK 500 ASP A 587 -1.02 68.45 REMARK 500 TRP B 476 96.79 -161.92 REMARK 500 ARG B 575 -8.52 77.27 REMARK 500 ASP B 576 39.19 -150.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P06 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P06 B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K04 RELATED DB: PDB REMARK 900 RELATED ID: 4K0I RELATED DB: PDB REMARK 900 RELATED ID: 4K16 RELATED DB: PDB DBREF 4XV2 A 444 705 UNP P15056 BRAF_HUMAN 444 705 DBREF 4XV2 B 444 705 UNP P15056 BRAF_HUMAN 444 705 SEQADV 4XV2 MET A 432 UNP P15056 EXPRESSION TAG SEQADV 4XV2 LYS A 433 UNP P15056 EXPRESSION TAG SEQADV 4XV2 LYS A 434 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLY A 435 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS A 436 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS A 437 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS A 438 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS A 439 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS A 440 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS A 441 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLY A 442 UNP P15056 EXPRESSION TAG SEQADV 4XV2 SER A 443 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ALA A 446 UNP P15056 SER 446 ENGINEERED MUTATION SEQADV 4XV2 ALA A 447 UNP P15056 SER 447 ENGINEERED MUTATION SEQADV 4XV2 ALA A 543 UNP P15056 ILE 543 ENGINEERED MUTATION SEQADV 4XV2 SER A 544 UNP P15056 ILE 544 ENGINEERED MUTATION SEQADV 4XV2 LYS A 551 UNP P15056 ILE 551 ENGINEERED MUTATION SEQADV 4XV2 ARG A 562 UNP P15056 GLN 562 ENGINEERED MUTATION SEQADV 4XV2 ASN A 588 UNP P15056 LEU 588 ENGINEERED MUTATION SEQADV 4XV2 GLU A 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQADV 4XV2 SER A 630 UNP P15056 LYS 630 ENGINEERED MUTATION SEQADV 4XV2 GLU A 667 UNP P15056 PHE 667 ENGINEERED MUTATION SEQADV 4XV2 SER A 673 UNP P15056 TYR 673 ENGINEERED MUTATION SEQADV 4XV2 ARG A 688 UNP P15056 ALA 688 ENGINEERED MUTATION SEQADV 4XV2 SER A 706 UNP P15056 EXPRESSION TAG SEQADV 4XV2 PHE A 707 UNP P15056 EXPRESSION TAG SEQADV 4XV2 PRO A 708 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ARG A 709 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ILE A 710 UNP P15056 EXPRESSION TAG SEQADV 4XV2 LEU A 711 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ALA A 712 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLU A 713 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ILE A 714 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLU A 715 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLU A 716 UNP P15056 EXPRESSION TAG SEQADV 4XV2 LEU A 717 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ALA A 718 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ARG A 719 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLU A 720 UNP P15056 EXPRESSION TAG SEQADV 4XV2 LEU A 721 UNP P15056 EXPRESSION TAG SEQADV 4XV2 SER A 722 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLY A 723 UNP P15056 EXPRESSION TAG SEQADV 4XV2 MET B 432 UNP P15056 EXPRESSION TAG SEQADV 4XV2 LYS B 433 UNP P15056 EXPRESSION TAG SEQADV 4XV2 LYS B 434 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLY B 435 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS B 436 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS B 437 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS B 438 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS B 439 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS B 440 UNP P15056 EXPRESSION TAG SEQADV 4XV2 HIS B 441 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLY B 442 UNP P15056 EXPRESSION TAG SEQADV 4XV2 SER B 443 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ALA B 446 UNP P15056 SER 446 ENGINEERED MUTATION SEQADV 4XV2 ALA B 447 UNP P15056 SER 447 ENGINEERED MUTATION SEQADV 4XV2 ALA B 543 UNP P15056 ILE 543 ENGINEERED MUTATION SEQADV 4XV2 SER B 544 UNP P15056 ILE 544 ENGINEERED MUTATION SEQADV 4XV2 LYS B 551 UNP P15056 ILE 551 ENGINEERED MUTATION SEQADV 4XV2 ARG B 562 UNP P15056 GLN 562 ENGINEERED MUTATION SEQADV 4XV2 ASN B 588 UNP P15056 LEU 588 ENGINEERED MUTATION SEQADV 4XV2 GLU B 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQADV 4XV2 SER B 630 UNP P15056 LYS 630 ENGINEERED MUTATION SEQADV 4XV2 GLU B 667 UNP P15056 PHE 667 ENGINEERED MUTATION SEQADV 4XV2 SER B 673 UNP P15056 TYR 673 ENGINEERED MUTATION SEQADV 4XV2 ARG B 688 UNP P15056 ALA 688 ENGINEERED MUTATION SEQADV 4XV2 SER B 706 UNP P15056 EXPRESSION TAG SEQADV 4XV2 PHE B 707 UNP P15056 EXPRESSION TAG SEQADV 4XV2 PRO B 708 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ARG B 709 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ILE B 710 UNP P15056 EXPRESSION TAG SEQADV 4XV2 LEU B 711 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ALA B 712 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLU B 713 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ILE B 714 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLU B 715 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLU B 716 UNP P15056 EXPRESSION TAG SEQADV 4XV2 LEU B 717 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ALA B 718 UNP P15056 EXPRESSION TAG SEQADV 4XV2 ARG B 719 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLU B 720 UNP P15056 EXPRESSION TAG SEQADV 4XV2 LEU B 721 UNP P15056 EXPRESSION TAG SEQADV 4XV2 SER B 722 UNP P15056 EXPRESSION TAG SEQADV 4XV2 GLY B 723 UNP P15056 EXPRESSION TAG SEQRES 1 A 292 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS GLY SER ARG SEQRES 2 A 292 ASP ALA ALA ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE SEQRES 3 A 292 THR VAL GLY GLN ARG ILE GLY SER GLY SER PHE GLY THR SEQRES 4 A 292 VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS SEQRES 5 A 292 MET LEU ASN VAL THR ALA PRO THR PRO GLN GLN LEU GLN SEQRES 6 A 292 ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG LYS THR ARG SEQRES 7 A 292 HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SER THR LYS SEQRES 8 A 292 PRO GLN LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SER SEQRES 9 A 292 SER LEU TYR HIS HIS LEU HIS ALA SER GLU THR LYS PHE SEQRES 10 A 292 GLU MET LYS LYS LEU ILE ASP ILE ALA ARG GLN THR ALA SEQRES 11 A 292 ARG GLY MET ASP TYR LEU HIS ALA LYS SER ILE ILE HIS SEQRES 12 A 292 ARG ASP LEU LYS SER ASN ASN ILE PHE LEU HIS GLU ASP SEQRES 13 A 292 ASN THR VAL LYS ILE GLY ASP PHE GLY LEU ALA THR GLU SEQRES 14 A 292 LYS SER ARG TRP SER GLY SER HIS GLN PHE GLU GLN LEU SEQRES 15 A 292 SER GLY SER ILE LEU TRP MET ALA PRO GLU VAL ILE ARG SEQRES 16 A 292 MET GLN ASP SER ASN PRO TYR SER PHE GLN SER ASP VAL SEQRES 17 A 292 TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU MET THR GLY SEQRES 18 A 292 GLN LEU PRO TYR SER ASN ILE ASN ASN ARG ASP GLN ILE SEQRES 19 A 292 ILE GLU MET VAL GLY ARG GLY SER LEU SER PRO ASP LEU SEQRES 20 A 292 SER LYS VAL ARG SER ASN CYS PRO LYS ARG MET LYS ARG SEQRES 21 A 292 LEU MET ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG SEQRES 22 A 292 PRO SER PHE PRO ARG ILE LEU ALA GLU ILE GLU GLU LEU SEQRES 23 A 292 ALA ARG GLU LEU SER GLY SEQRES 1 B 292 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS GLY SER ARG SEQRES 2 B 292 ASP ALA ALA ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE SEQRES 3 B 292 THR VAL GLY GLN ARG ILE GLY SER GLY SER PHE GLY THR SEQRES 4 B 292 VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS SEQRES 5 B 292 MET LEU ASN VAL THR ALA PRO THR PRO GLN GLN LEU GLN SEQRES 6 B 292 ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG LYS THR ARG SEQRES 7 B 292 HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SER THR LYS SEQRES 8 B 292 PRO GLN LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SER SEQRES 9 B 292 SER LEU TYR HIS HIS LEU HIS ALA SER GLU THR LYS PHE SEQRES 10 B 292 GLU MET LYS LYS LEU ILE ASP ILE ALA ARG GLN THR ALA SEQRES 11 B 292 ARG GLY MET ASP TYR LEU HIS ALA LYS SER ILE ILE HIS SEQRES 12 B 292 ARG ASP LEU LYS SER ASN ASN ILE PHE LEU HIS GLU ASP SEQRES 13 B 292 ASN THR VAL LYS ILE GLY ASP PHE GLY LEU ALA THR GLU SEQRES 14 B 292 LYS SER ARG TRP SER GLY SER HIS GLN PHE GLU GLN LEU SEQRES 15 B 292 SER GLY SER ILE LEU TRP MET ALA PRO GLU VAL ILE ARG SEQRES 16 B 292 MET GLN ASP SER ASN PRO TYR SER PHE GLN SER ASP VAL SEQRES 17 B 292 TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU MET THR GLY SEQRES 18 B 292 GLN LEU PRO TYR SER ASN ILE ASN ASN ARG ASP GLN ILE SEQRES 19 B 292 ILE GLU MET VAL GLY ARG GLY SER LEU SER PRO ASP LEU SEQRES 20 B 292 SER LYS VAL ARG SER ASN CYS PRO LYS ARG MET LYS ARG SEQRES 21 B 292 LEU MET ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG SEQRES 22 B 292 PRO SER PHE PRO ARG ILE LEU ALA GLU ILE GLU GLU LEU SEQRES 23 B 292 ALA ARG GLU LEU SER GLY HET P06 A 801 35 HET P06 B 801 35 HETNAM P06 DABRAFENIB HETSYN P06 N-{3-[5-(2-AMINOPYRIMIDIN-4-YL)-2-TERT-BUTYL-1,3- HETSYN 2 P06 THIAZOL-4-YL]-2-FLUOROPHENYL}-2,6- HETSYN 3 P06 DIFLUOROBENZENESULFONAMIDE FORMUL 3 P06 2(C23 H20 F3 N5 O2 S2) FORMUL 5 HOH *54(H2 O) HELIX 1 AA1 THR A 491 ARG A 506 1 16 HELIX 2 AA2 SER A 536 ALA A 543 1 8 HELIX 3 AA3 GLU A 549 LYS A 570 1 22 HELIX 4 AA4 GLU A 586 ASN A 588 5 3 HELIX 5 AA5 ALA A 621 ARG A 626 1 6 HELIX 6 AA6 SER A 634 GLY A 652 1 19 HELIX 7 AA7 ASN A 661 ARG A 671 1 11 HELIX 8 AA8 ASP A 677 VAL A 681 5 5 HELIX 9 AA9 PRO A 686 LEU A 697 1 12 HELIX 10 AB1 LYS A 700 ARG A 704 5 5 HELIX 11 AB2 SER A 706 ALA A 718 1 13 HELIX 12 AB3 THR B 491 ARG B 506 1 16 HELIX 13 AB4 SER B 536 ALA B 543 1 8 HELIX 14 AB5 GLU B 549 LYS B 570 1 22 HELIX 15 AB6 GLU B 586 ASN B 588 5 3 HELIX 16 AB7 GLY B 615 MET B 620 5 6 HELIX 17 AB8 ALA B 621 ARG B 626 1 6 HELIX 18 AB9 SER B 634 GLY B 652 1 19 HELIX 19 AC1 ASN B 661 ARG B 671 1 11 HELIX 20 AC2 ASP B 677 VAL B 681 5 5 HELIX 21 AC3 PRO B 686 LEU B 697 1 12 HELIX 22 AC4 LYS B 700 ARG B 704 5 5 HELIX 23 AC5 SER B 706 GLU B 720 1 15 SHEET 1 AA1 5 THR A 458 SER A 465 0 SHEET 2 AA1 5 THR A 470 LYS A 475 -1 O VAL A 471 N ILE A 463 SHEET 3 AA1 5 ASP A 479 MET A 484 -1 O MET A 484 N THR A 470 SHEET 4 AA1 5 ALA A 526 GLN A 530 -1 O ILE A 527 N LYS A 483 SHEET 5 AA1 5 PHE A 516 SER A 520 -1 N GLY A 518 O VAL A 528 SHEET 1 AA2 2 ILE A 582 HIS A 585 0 SHEET 2 AA2 2 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 AA3 5 THR B 458 SER B 465 0 SHEET 2 AA3 5 THR B 470 LYS B 475 -1 O VAL B 471 N ILE B 463 SHEET 3 AA3 5 ASP B 479 LEU B 485 -1 O VAL B 480 N GLY B 474 SHEET 4 AA3 5 LEU B 525 GLN B 530 -1 O THR B 529 N ALA B 481 SHEET 5 AA3 5 PHE B 516 SER B 520 -1 N GLY B 518 O VAL B 528 SHEET 1 AA4 2 ILE B 582 HIS B 585 0 SHEET 2 AA4 2 THR B 589 ILE B 592 -1 O THR B 589 N HIS B 585 CISPEP 1 LYS A 522 PRO A 523 0 4.96 CISPEP 2 LYS B 522 PRO B 523 0 -1.13 SITE 1 AC1 18 GLY A 464 SER A 465 PHE A 468 VAL A 471 SITE 2 AC1 18 ALA A 481 LYS A 483 LEU A 505 LEU A 514 SITE 3 AC1 18 ILE A 527 THR A 529 GLN A 530 TRP A 531 SITE 4 AC1 18 CYS A 532 PHE A 583 GLY A 593 ASP A 594 SITE 5 AC1 18 PHE A 595 HOH A 913 SITE 1 AC2 18 SER B 465 GLY B 466 PHE B 468 VAL B 471 SITE 2 AC2 18 ALA B 481 LYS B 483 LEU B 505 LEU B 514 SITE 3 AC2 18 PHE B 516 ILE B 527 THR B 529 GLN B 530 SITE 4 AC2 18 TRP B 531 CYS B 532 GLY B 593 ASP B 594 SITE 5 AC2 18 PHE B 595 HOH B 913 CRYST1 53.689 105.666 109.731 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018626 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009113 0.00000