HEADER VIRAL PROTEIN/IMMUNE SYSTEM 27-JAN-15 4XVS TITLE CRYSTAL STRUCTURE OF HIV-1 DONOR 45 D45-01DG5 COREE GP120 WITH TITLE 2 ANTIBODY 45-VRC01.H01+07.O-863513/45-VRC01.L01+07.O-110653 TITLE 3 (VRC07_1995) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VRC07_1995 45-VRC01.H01+07.O-863513/45-VRC01.L01+07.O- COMPND 3 110653 HEAVY CHAIN; COMPND 4 CHAIN: H; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 45-VRC01.H01+07.O-863513/45-VRC01.L01+07.O-110653 LIGHT COMPND 8 CHAIN; COMPND 9 CHAIN: L; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DONOR 45 01DG5 COREE GP120; COMPND 13 CHAIN: G; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 15 ORGANISM_TAXID: 11676; SOURCE 16 VARIANT: 01DG5; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: 293F KEYWDS HIV-1 ANTIBODYOMICS NEUTRALIZING ANTIBODY GERMLINE BINDING, VIRAL KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.G.JOYCE,J.R.MASCOLA,P.D.KWONG REVDAT 5 16-OCT-24 4XVS 1 REMARK REVDAT 4 27-SEP-23 4XVS 1 HETSYN REVDAT 3 29-JUL-20 4XVS 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 27-JUL-16 4XVS 1 REMARK REVDAT 1 06-MAY-15 4XVS 0 JRNL AUTH X.WU,Z.ZHANG,C.A.SCHRAMM,M.G.JOYCE,Y.DO KWON,T.ZHOU,Z.SHENG, JRNL AUTH 2 B.ZHANG,S.O'DELL,K.MCKEE,I.S.GEORGIEV,G.Y.CHUANG,N.S.LONGO, JRNL AUTH 3 R.M.LYNCH,K.O.SAUNDERS,C.SOTO,S.SRIVATSAN,Y.YANG,R.T.BAILER, JRNL AUTH 4 M.K.LOUDER,J.C.MULLIKIN,M.CONNORS,P.D.KWONG,J.R.MASCOLA, JRNL AUTH 5 L.SHAPIRO JRNL TITL MATURATION AND DIVERSITY OF THE VRC01-ANTIBODY LINEAGE OVER JRNL TITL 2 15 YEARS OF CHRONIC HIV-1 INFECTION. JRNL REF CELL V. 161 470 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 25865483 JRNL DOI 10.1016/J.CELL.2015.03.004 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 69542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3514 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.45 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4644 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2202 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4430 REMARK 3 BIN R VALUE (WORKING SET) : 0.2186 REMARK 3 BIN FREE R VALUE : 0.2528 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.61 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 214 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 626 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86390 REMARK 3 B22 (A**2) : -1.56640 REMARK 3 B33 (A**2) : 0.70250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.253 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.160 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.133 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.151 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.130 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6287 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8549 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2165 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 153 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 912 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6287 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 860 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7094 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.85 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { H|1 - H|228 H|301 - H|495 } REMARK 3 ORIGIN FOR THE GROUP (A): 7.1956 32.7245 -13.6074 REMARK 3 T TENSOR REMARK 3 T11: -0.0384 T22: -0.0513 REMARK 3 T33: -0.0416 T12: -0.0193 REMARK 3 T13: 0.0313 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.9187 L22: 0.6254 REMARK 3 L33: 0.8900 L12: 0.4324 REMARK 3 L13: 0.5801 L23: 0.4926 REMARK 3 S TENSOR REMARK 3 S11: -0.0756 S12: 0.0156 S13: 0.0634 REMARK 3 S21: -0.0789 S22: 0.0271 S23: -0.0983 REMARK 3 S31: -0.1408 S32: 0.0820 S33: 0.0485 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { L|3 - L|216 L|301 - L|476 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.1324 32.8099 3.1914 REMARK 3 T TENSOR REMARK 3 T11: -0.0340 T22: -0.0426 REMARK 3 T33: -0.0187 T12: 0.0052 REMARK 3 T13: -0.0070 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.6519 L22: 0.5965 REMARK 3 L33: 0.4203 L12: 0.3336 REMARK 3 L13: 0.2377 L23: 0.4391 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: -0.0594 S13: 0.1168 REMARK 3 S21: -0.0242 S22: -0.0053 S23: -0.0120 REMARK 3 S31: -0.0714 S32: -0.0705 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { G|44 - G|493 G|601 - G|608 G|701 - G|955 } REMARK 3 ORIGIN FOR THE GROUP (A): -16.3484 6.4766 -43.3132 REMARK 3 T TENSOR REMARK 3 T11: -0.0699 T22: -0.0315 REMARK 3 T33: -0.1232 T12: 0.0141 REMARK 3 T13: 0.0069 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.7082 L22: 1.3683 REMARK 3 L33: 1.0127 L12: 0.1719 REMARK 3 L13: -0.4273 L23: 0.2712 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: 0.1144 S13: -0.0628 REMARK 3 S21: -0.1586 S22: -0.0751 S23: -0.0095 REMARK 3 S31: 0.0137 S32: -0.1203 S33: 0.1411 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69542 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 27.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XVT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CACODYLATE PH 6.5, 0.2 M REMARK 280 NAACETATE, 6 % PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.82050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.27300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.66700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.27300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.82050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.66700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 ASP G 401 REMARK 465 THR G 402 REMARK 465 GLU G 403 REMARK 465 VAL G 404 REMARK 465 VAL G 405 REMARK 465 ASN G 406 REMARK 465 ASN G 407 REMARK 465 THR G 408 REMARK 465 GLU G 409 REMARK 465 LYS G 410 REMARK 465 GLY G 494 REMARK 465 SER G 495 REMARK 465 LEU G 496 REMARK 465 GLU G 497 REMARK 465 VAL G 498 REMARK 465 LEU G 499 REMARK 465 PHE G 500 REMARK 465 GLN G 501 REMARK 465 GLY G 502 REMARK 465 PRO G 503 REMARK 465 GLY G 504 REMARK 465 HIS G 505 REMARK 465 HIS G 506 REMARK 465 HIS G 507 REMARK 465 HIS G 508 REMARK 465 HIS G 509 REMARK 465 HIS G 510 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 3 CG CD OE1 OE2 REMARK 470 ASN G 398 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ASN G 362 C1 NAG G 606 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 142 41.32 -89.19 REMARK 500 TYR L 91 -128.89 54.54 REMARK 500 LYS L 171 -60.73 -100.85 REMARK 500 LYS L 192 -63.82 -106.60 REMARK 500 ASN G 80 78.85 -118.91 REMARK 500 GLN G 258 -61.54 69.42 REMARK 500 GLU G 268 -98.03 -101.16 REMARK 500 ASN G 276 100.94 -161.47 REMARK 500 ASN G 392 66.48 -158.28 REMARK 500 THR G 465 13.45 55.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 452 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH H 467 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH H 471 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH H 479 DISTANCE = 8.66 ANGSTROMS REMARK 525 HOH G 831 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH G 852 DISTANCE = 10.00 ANGSTROMS REMARK 525 HOH G 885 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH G 909 DISTANCE = 8.29 ANGSTROMS REMARK 525 HOH G 953 DISTANCE = 9.01 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG G 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XVT RELATED DB: PDB DBREF 4XVS H 1 228 PDB 4XVS 4XVS 1 228 DBREF 4XVS L 3 216 PDB 4XVS 4XVS 3 216 DBREF 4XVS G 44 510 PDB 4XVS 4XVS 44 510 SEQRES 1 H 228 GLN VAL GLN LEU LEU GLN SER GLY ALA GLN VAL LYS LYS SEQRES 2 H 228 THR GLY ALA SER MET ARG ILE SER CYS LYS THR SER GLY SEQRES 3 H 228 TYR THR PHE LEU ASN CYS PRO ILE ASN TRP VAL ARG GLN SEQRES 4 H 228 ALA PRO GLY ARG GLY LEU GLU TRP MET GLY TRP MET LYS SEQRES 5 H 228 PRO ARG GLY GLY ALA VAL ASN TYR PRO GLN LYS PHE GLN SEQRES 6 H 228 GLY ARG VAL THR MET THR ARG ASP MET SER THR ASP THR SEQRES 7 H 228 ALA PHE LEU ASP MET SER ASN LEU ARG SER ASP ASP THR SEQRES 8 H 228 ALA VAL TYR PHE CYS ALA ARG GLY LYS TYR CYS THR ALA SEQRES 9 H 228 SER ASP TYR TYR ASN TRP ASP PHE GLU HIS TRP GLY ARG SEQRES 10 H 228 GLY THR LEU VAL THR VAL SER SER PRO ALA THR LYS GLY SEQRES 11 H 228 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 228 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 228 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 228 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 228 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 228 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 228 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 228 LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 210 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 210 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG THR SER SEQRES 3 L 210 GLN TYR GLY SER LEU ALA TRP TYR GLN GLN ARG PRO GLY SEQRES 4 L 210 GLN ALA PRO ARG LEU VAL ILE TYR GLY GLY SER SER ARG SEQRES 5 L 210 ALA THR GLY ILE PRO ASP ARG PHE THR GLY SER ARG SER SEQRES 6 L 210 GLY ALA ASP TYR THR LEU THR ILE ASN ARG LEU GLU PRO SEQRES 7 L 210 GLU ASP PHE GLY ILE TYR TYR CYS GLN GLN TYR GLU PHE SEQRES 8 L 210 PHE GLY GLN GLY THR LYS VAL GLU VAL ASP ILE LYS ARG SEQRES 9 L 210 THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER SEQRES 10 L 210 ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS SEQRES 11 L 210 LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN SEQRES 12 L 210 TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN SEQRES 13 L 210 GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SEQRES 14 L 210 SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP TYR SEQRES 15 L 210 GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN SEQRES 16 L 210 GLY LEU ALA SER PRO VAL THR LYS SER PHE ASN ARG GLY SEQRES 17 L 210 GLU CYS SEQRES 1 G 375 VAL TRP LYS GLU ALA THR ALA THR LEU PHE CYS ALA SER SEQRES 2 G 375 ASP ALA LYS ALA TYR GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 G 375 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 375 GLU VAL VAL LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 G 375 TRP LYS ASN ASN MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 G 375 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 7 G 375 LEU THR GLY GLY SER VAL ILE THR GLN ALA CYS PRO LYS SEQRES 8 G 375 ILE SER PHE GLU PRO ILE PRO ILE HIS TYR CYS ALA PRO SEQRES 9 G 375 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASP LYS LYS PHE SEQRES 10 G 375 ASN GLY THR GLY PRO CYS THR ASN VAL SER THR VAL GLN SEQRES 11 G 375 CYS THR HIS GLY ILE ARG PRO VAL VAL SER THR GLN LEU SEQRES 12 G 375 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE VAL ILE SEQRES 13 G 375 ARG SER GLU ASN ILE LYS ASP ASN ALA LYS ILE ILE ILE SEQRES 14 G 375 VAL GLN LEU ASN GLU THR VAL GLU ILE ASN CYS THR ARG SEQRES 15 G 375 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 G 375 GLN ALA HIS CYS ASN ILE SER LYS ALA LYS TRP GLU ASN SEQRES 17 G 375 THR LEU LYS GLN ILE ALA ARG LYS LEU ARG GLU HIS PHE SEQRES 18 G 375 LYS ASN GLU THR ILE ALA PHE ASN GLN SER SER GLY GLY SEQRES 19 G 375 ASP PRO GLU ILE VAL MET HIS SER PHE ASN CYS GLY GLY SEQRES 20 G 375 GLU PHE PHE TYR CYS ASN SER THR GLN LEU PHE ASN SER SEQRES 21 G 375 THR TRP THR TRP ASN ASP THR GLU VAL VAL ASN ASN THR SEQRES 22 G 375 GLU LYS ASN ILE ASN ILE THR LEU PRO CYS ARG ILE LYS SEQRES 23 G 375 GLN ILE ILE ASN MET TRP GLN GLU VAL GLY LYS ALA MET SEQRES 24 G 375 TYR ALA PRO PRO ILE LYS GLY GLN ILE ARG CYS SER SER SEQRES 25 G 375 ASN ILE THR GLY LEU LEU LEU THR ARG ASP GLY GLY SER SEQRES 26 G 375 SER THR ASN GLY THR THR GLU THR PHE ARG PRO GLY GLY SEQRES 27 G 375 GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS SEQRES 28 G 375 TYR LYS VAL VAL LYS ILE GLU GLY SER LEU GLU VAL LEU SEQRES 29 G 375 PHE GLN GLY PRO GLY HIS HIS HIS HIS HIS HIS HET NAG G 601 14 HET NAG G 602 14 HET NAG G 603 14 HET NAG G 604 14 HET NAG G 605 14 HET NAG G 606 14 HET NAG G 607 13 HET NAG G 608 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 8(C8 H15 N O6) FORMUL 12 HOH *626(H2 O) HELIX 1 AA1 THR H 28 CYS H 32 5 5 HELIX 2 AA2 PRO H 61 GLN H 65 5 5 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 168 ALA H 170 5 3 HELIX 5 AA5 SER H 199 LEU H 201 5 3 HELIX 6 AA6 LYS H 213 ASN H 216 5 4 HELIX 7 AA7 GLU L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 123 SER L 129 1 7 HELIX 9 AA9 LYS L 185 GLU L 189 1 5 HELIX 10 AB1 GLU G 64 ALA G 73 1 10 HELIX 11 AB2 ASN G 98 LEU G 116 1 19 HELIX 12 AB3 LYS G 335 ARG G 350 1 16 HELIX 13 AB4 ASP G 368 MET G 373 1 6 HELIX 14 AB5 SER G 387 PHE G 391 5 5 HELIX 15 AB6 MET G 476 TYR G 485 1 10 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 MET H 18 SER H 25 -1 O LYS H 23 N LEU H 5 SHEET 3 AA1 4 THR H 78 MET H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA1 4 VAL H 68 ASP H 73 -1 N THR H 71 O PHE H 80 SHEET 1 AA2 6 GLN H 10 LYS H 13 0 SHEET 2 AA2 6 THR H 119 SER H 124 1 O THR H 122 N LYS H 12 SHEET 3 AA2 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 119 SHEET 4 AA2 6 ILE H 34 GLN H 39 -1 N VAL H 37 O PHE H 95 SHEET 5 AA2 6 GLU H 46 MET H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 VAL H 58 ASN H 59 -1 O ASN H 59 N TRP H 50 SHEET 1 AA3 4 GLN H 10 LYS H 13 0 SHEET 2 AA3 4 THR H 119 SER H 124 1 O THR H 122 N LYS H 12 SHEET 3 AA3 4 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 119 SHEET 4 AA3 4 HIS H 114 TRP H 115 -1 O HIS H 114 N ARG H 98 SHEET 1 AA4 2 TYR H 101 CYS H 102 0 SHEET 2 AA4 2 TYR H 107 TYR H 108 -1 O TYR H 108 N TYR H 101 SHEET 1 AA5 4 SER H 132 LEU H 136 0 SHEET 2 AA5 4 THR H 147 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AA5 4 TYR H 188 PRO H 197 -1 O LEU H 190 N VAL H 154 SHEET 4 AA5 4 VAL H 175 THR H 177 -1 N HIS H 176 O VAL H 193 SHEET 1 AA6 4 THR H 143 SER H 144 0 SHEET 2 AA6 4 THR H 147 TYR H 157 -1 O THR H 147 N SER H 144 SHEET 3 AA6 4 TYR H 188 PRO H 197 -1 O LEU H 190 N VAL H 154 SHEET 4 AA6 4 VAL H 181 LEU H 182 -1 N VAL H 181 O SER H 189 SHEET 1 AA7 3 THR H 163 TRP H 166 0 SHEET 2 AA7 3 TYR H 206 HIS H 212 -1 O ASN H 209 N SER H 165 SHEET 3 AA7 3 THR H 217 VAL H 223 -1 O THR H 217 N HIS H 212 SHEET 1 AA8 4 THR L 7 SER L 9 0 SHEET 2 AA8 4 ALA L 21 ARG L 26 -1 O ARG L 26 N THR L 7 SHEET 3 AA8 4 ASP L 70 ILE L 75 -1 O TYR L 71 N CYS L 25 SHEET 4 AA8 4 PHE L 62 SER L 67 -1 N THR L 63 O THR L 74 SHEET 1 AA9 6 THR L 12 SER L 14 0 SHEET 2 AA9 6 THR L 102 GLU L 105 1 O GLU L 105 N LEU L 13 SHEET 3 AA9 6 GLY L 84 GLN L 90 -1 N GLY L 84 O VAL L 104 SHEET 4 AA9 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA9 6 ARG L 45 TYR L 49 -1 O VAL L 47 N TRP L 35 SHEET 6 AA9 6 SER L 53 ARG L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AB1 4 THR L 12 SER L 14 0 SHEET 2 AB1 4 THR L 102 GLU L 105 1 O GLU L 105 N LEU L 13 SHEET 3 AB1 4 GLY L 84 GLN L 90 -1 N GLY L 84 O VAL L 104 SHEET 4 AB1 4 PHE L 97 PHE L 98 -1 O PHE L 97 N GLN L 90 SHEET 1 AB2 4 SER L 116 PHE L 120 0 SHEET 2 AB2 4 THR L 131 PHE L 141 -1 O VAL L 135 N PHE L 120 SHEET 3 AB2 4 TYR L 175 SER L 184 -1 O LEU L 177 N LEU L 138 SHEET 4 AB2 4 SER L 161 VAL L 165 -1 N GLN L 162 O THR L 180 SHEET 1 AB3 4 ALA L 155 LEU L 156 0 SHEET 2 AB3 4 LYS L 147 VAL L 152 -1 N VAL L 152 O ALA L 155 SHEET 3 AB3 4 VAL L 193 THR L 199 -1 O GLU L 197 N GLN L 149 SHEET 4 AB3 4 VAL L 207 ASN L 212 -1 O VAL L 207 N VAL L 198 SHEET 1 AB4 5 LYS G 46 GLU G 47 0 SHEET 2 AB4 5 TYR G 487 LYS G 491 -1 O LYS G 491 N LYS G 46 SHEET 3 AB4 5 PHE G 223 CYS G 228 -1 N LEU G 226 O LYS G 488 SHEET 4 AB4 5 VAL G 242 VAL G 245 -1 O VAL G 245 N ILE G 225 SHEET 5 AB4 5 VAL G 84 LEU G 86 -1 N LEU G 86 O VAL G 242 SHEET 1 AB5 3 CYS G 74 PRO G 76 0 SHEET 2 AB5 3 PHE G 53 SER G 56 1 N CYS G 54 O VAL G 75 SHEET 3 AB5 3 HIS G 216 CYS G 218 -1 O CYS G 218 N PHE G 53 SHEET 1 AB6 2 GLU G 91 ASN G 94 0 SHEET 2 AB6 2 THR G 236 CYS G 239 -1 O GLY G 237 N PHE G 93 SHEET 1 AB7 4 SER G 199 THR G 202 0 SHEET 2 AB7 4 VAL G 120 THR G 123 -1 N LYS G 121 O ILE G 201 SHEET 3 AB7 4 LYS G 432 MET G 434 -1 O LYS G 432 N LEU G 122 SHEET 4 AB7 4 ILE G 423 ASN G 425 -1 N ILE G 424 O ALA G 433 SHEET 1 AB8 7 LEU G 259 LEU G 261 0 SHEET 2 AB8 7 ILE G 443 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 AB8 7 ILE G 284 ARG G 298 -1 N VAL G 292 O ILE G 449 SHEET 4 AB8 7 GLN G 328 SER G 334 -1 O ASN G 332 N ASN G 295 SHEET 5 AB8 7 ASN G 413 LYS G 421 -1 O ILE G 414 N ILE G 333 SHEET 6 AB8 7 GLU G 381 CYS G 385 -1 N TYR G 384 O ARG G 419 SHEET 7 AB8 7 HIS G 374 CYS G 378 -1 N PHE G 376 O PHE G 383 SHEET 1 AB9 6 VAL G 271 ARG G 273 0 SHEET 2 AB9 6 ILE G 284 ARG G 298 -1 O ILE G 285 N ARG G 273 SHEET 3 AB9 6 ILE G 443 ARG G 456 -1 O ILE G 449 N VAL G 292 SHEET 4 AB9 6 THR G 466 PRO G 471 -1 O ARG G 470 N THR G 455 SHEET 5 AB9 6 THR G 358 PHE G 361 1 N ALA G 360 O GLU G 467 SHEET 6 AB9 6 SER G 393 TRP G 395 -1 O TRP G 395 N ILE G 359 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.66 SSBOND 2 CYS H 32 CYS H 102 1555 1555 2.72 SSBOND 3 CYS L 25 CYS L 88 1555 1555 2.64 SSBOND 4 CYS L 136 CYS L 196 1555 1555 2.90 SSBOND 5 CYS G 54 CYS G 74 1555 1555 2.87 SSBOND 6 CYS G 119 CYS G 205 1555 1555 2.95 SSBOND 7 CYS G 228 CYS G 239 1555 1555 2.97 SSBOND 8 CYS G 378 CYS G 445 1555 1555 2.37 SSBOND 9 CYS G 385 CYS G 418 1555 1555 2.87 LINK ND2 ASN G 234 C1 NAG G 601 1555 1555 1.43 LINK ND2 ASN G 262 C1 NAG G 605 1555 1555 1.43 LINK ND2 ASN G 289 C1 NAG G 604 1555 1555 1.44 LINK ND2 ASN G 295 C1 NAG G 603 1555 1555 1.44 LINK ND2 ASN G 362 C1 NAG G 606 1555 1555 1.31 LINK ND2 ASN G 386 C1 NAG G 607 1555 1555 1.57 LINK ND2 ASN G 392 C1 NAG G 608 1555 1555 1.44 LINK ND2 ASN G 413 C1 NAG G 602 1555 1555 1.43 CISPEP 1 PHE H 158 PRO H 159 0 -5.30 CISPEP 2 GLU H 160 PRO H 161 0 4.15 CISPEP 3 SER L 9 PRO L 10 0 -3.98 CISPEP 4 TYR L 142 PRO L 143 0 -1.50 CRYST1 67.641 69.334 200.546 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004986 0.00000