HEADER DNA BINDING PROTEIN 29-JAN-15 4XWS TITLE OXYR REGULATORY DOMAIN C199D MUTANT FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 88-310; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: OXYR, PA5344; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA KEYWDS OXYR, PEROXIDE, TRANSCRIPTION REGULATOR, LYSR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.JO,J.S.KIM,N.C.HA REVDAT 4 20-MAR-24 4XWS 1 REMARK REVDAT 3 16-MAY-18 4XWS 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 03-JUN-15 4XWS 1 JRNL REVDAT 1 29-APR-15 4XWS 0 JRNL AUTH I.JO,I.Y.CHUNG,H.W.BAE,J.S.KIM,S.SONG,Y.H.CHO,N.C.HA JRNL TITL STRUCTURAL DETAILS OF THE OXYR PEROXIDE-SENSING MECHANISM JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 6443 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 25931525 JRNL DOI 10.1073/PNAS.1424495112 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.510 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 25142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9914 - 7.1405 1.00 1727 148 0.1697 0.1833 REMARK 3 2 7.1405 - 5.7111 1.00 1708 148 0.2067 0.2185 REMARK 3 3 5.7111 - 5.0021 1.00 1701 148 0.2051 0.2352 REMARK 3 4 5.0021 - 4.5507 1.00 1707 139 0.1805 0.2250 REMARK 3 5 4.5507 - 4.2278 1.00 1703 148 0.1838 0.2126 REMARK 3 6 4.2278 - 3.9806 1.00 1692 144 0.2104 0.2655 REMARK 3 7 3.9806 - 3.7826 0.90 1509 130 0.2978 0.3679 REMARK 3 8 3.7826 - 3.6190 0.80 1366 117 0.3369 0.3546 REMARK 3 9 3.6190 - 3.4804 0.96 1637 141 0.2897 0.2883 REMARK 3 10 3.4804 - 3.3609 0.99 1679 141 0.2800 0.3348 REMARK 3 11 3.3609 - 3.2563 1.00 1703 145 0.2703 0.2803 REMARK 3 12 3.2563 - 3.1636 1.00 1678 140 0.2754 0.3116 REMARK 3 13 3.1636 - 3.0806 1.00 1673 143 0.2799 0.3383 REMARK 3 14 3.0806 - 3.0057 0.99 1683 144 0.2996 0.3447 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6353 REMARK 3 ANGLE : 0.837 8683 REMARK 3 CHIRALITY : 0.030 1005 REMARK 3 PLANARITY : 0.005 1112 REMARK 3 DIHEDRAL : 12.647 2316 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97830 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25947 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL(9.0), 22% PEG 4K, 5MM REMARK 280 DTT, 5MM TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.23067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.46133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.84600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 113.07667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.61533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 84 REMARK 465 ALA A 85 REMARK 465 MET A 86 REMARK 465 ALA A 87 REMARK 465 GLN A 88 REMARK 465 PRO A 301 REMARK 465 GLN A 302 REMARK 465 THR A 303 REMARK 465 GLN A 304 REMARK 465 GLU A 305 REMARK 465 GLN A 306 REMARK 465 PRO A 307 REMARK 465 GLN A 308 REMARK 465 ILE A 309 REMARK 465 ALA A 310 REMARK 465 GLY B 84 REMARK 465 ALA B 85 REMARK 465 MET B 86 REMARK 465 ALA B 87 REMARK 465 GLN B 88 REMARK 465 LEU B 89 REMARK 465 ARG B 201 REMARK 465 ASP B 202 REMARK 465 GLN B 203 REMARK 465 VAL B 204 REMARK 465 LEU B 205 REMARK 465 GLU B 206 REMARK 465 ALA B 207 REMARK 465 CYS B 208 REMARK 465 PRO B 209 REMARK 465 THR B 210 REMARK 465 VAL B 211 REMARK 465 ARG B 212 REMARK 465 LYS B 213 REMARK 465 GLY B 214 REMARK 465 ASP B 215 REMARK 465 GLU B 216 REMARK 465 VAL B 298 REMARK 465 ALA B 299 REMARK 465 ARG B 300 REMARK 465 PRO B 301 REMARK 465 GLN B 302 REMARK 465 THR B 303 REMARK 465 GLN B 304 REMARK 465 GLU B 305 REMARK 465 GLN B 306 REMARK 465 PRO B 307 REMARK 465 GLN B 308 REMARK 465 ILE B 309 REMARK 465 ALA B 310 REMARK 465 GLY C 84 REMARK 465 ALA C 85 REMARK 465 MET C 86 REMARK 465 ALA C 87 REMARK 465 GLN C 88 REMARK 465 LEU C 89 REMARK 465 PHE C 200 REMARK 465 ARG C 201 REMARK 465 ASP C 202 REMARK 465 GLN C 203 REMARK 465 VAL C 204 REMARK 465 LEU C 205 REMARK 465 GLU C 206 REMARK 465 ALA C 207 REMARK 465 CYS C 208 REMARK 465 PRO C 209 REMARK 465 THR C 210 REMARK 465 VAL C 211 REMARK 465 ARG C 212 REMARK 465 LYS C 213 REMARK 465 GLY C 214 REMARK 465 ASP C 215 REMARK 465 GLU C 216 REMARK 465 ASN C 217 REMARK 465 LYS C 218 REMARK 465 ARG C 300 REMARK 465 PRO C 301 REMARK 465 GLN C 302 REMARK 465 THR C 303 REMARK 465 GLN C 304 REMARK 465 GLU C 305 REMARK 465 GLN C 306 REMARK 465 PRO C 307 REMARK 465 GLN C 308 REMARK 465 ILE C 309 REMARK 465 ALA C 310 REMARK 465 GLY D 84 REMARK 465 ALA D 85 REMARK 465 MET D 86 REMARK 465 ALA D 87 REMARK 465 GLN D 88 REMARK 465 ARG D 201 REMARK 465 ASP D 202 REMARK 465 GLN D 203 REMARK 465 VAL D 204 REMARK 465 LEU D 205 REMARK 465 GLU D 206 REMARK 465 ALA D 207 REMARK 465 CYS D 208 REMARK 465 PRO D 209 REMARK 465 THR D 210 REMARK 465 VAL D 211 REMARK 465 ARG D 212 REMARK 465 LYS D 213 REMARK 465 GLY D 214 REMARK 465 ASP D 215 REMARK 465 GLU D 216 REMARK 465 ASN D 217 REMARK 465 ARG D 300 REMARK 465 PRO D 301 REMARK 465 GLN D 302 REMARK 465 THR D 303 REMARK 465 GLN D 304 REMARK 465 GLU D 305 REMARK 465 GLN D 306 REMARK 465 PRO D 307 REMARK 465 GLN D 308 REMARK 465 ILE D 309 REMARK 465 ALA D 310 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 125 NZ LYS C 135 2.13 REMARK 500 OD1 ASP B 134 NH1 ARG B 137 2.15 REMARK 500 NH2 ARG B 231 O ALA B 247 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 174 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 101 -53.23 -124.58 REMARK 500 LEU A 105 -52.09 -120.55 REMARK 500 PRO A 159 109.59 -57.13 REMARK 500 TRP A 175 0.17 -66.81 REMARK 500 LEU A 186 33.54 -92.05 REMARK 500 LEU A 205 74.70 49.96 REMARK 500 ASN A 217 48.40 -75.59 REMARK 500 ASP A 249 56.44 -102.34 REMARK 500 LEU B 105 -53.51 -130.43 REMARK 500 ASP B 172 56.69 -108.04 REMARK 500 ALA B 177 48.62 -86.45 REMARK 500 ASP B 188 -176.06 -172.60 REMARK 500 LEU B 238 47.61 -91.64 REMARK 500 LEU C 186 48.11 -82.28 REMARK 500 GLU C 196 -50.14 -131.95 REMARK 500 GLU C 223 50.26 -117.06 REMARK 500 ASP C 249 53.76 -95.46 REMARK 500 LEU D 105 -53.12 -129.93 REMARK 500 SER D 250 55.20 -91.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 182 SER C 183 -134.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X6G RELATED DB: PDB REMARK 900 RELATED ID: 4Y0M RELATED DB: PDB DBREF 4XWS A 88 310 UNP Q9HTL4 Q9HTL4_PSEAE 88 310 DBREF 4XWS B 88 310 UNP Q9HTL4 Q9HTL4_PSEAE 88 310 DBREF 4XWS C 88 310 UNP Q9HTL4 Q9HTL4_PSEAE 88 310 DBREF 4XWS D 88 310 UNP Q9HTL4 Q9HTL4_PSEAE 88 310 SEQADV 4XWS GLY A 84 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ALA A 85 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS MET A 86 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ALA A 87 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ASP A 199 UNP Q9HTL4 CYS 199 ENGINEERED MUTATION SEQADV 4XWS GLY B 84 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ALA B 85 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS MET B 86 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ALA B 87 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ASP B 199 UNP Q9HTL4 CYS 199 ENGINEERED MUTATION SEQADV 4XWS GLY C 84 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ALA C 85 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS MET C 86 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ALA C 87 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ASP C 199 UNP Q9HTL4 CYS 199 ENGINEERED MUTATION SEQADV 4XWS GLY D 84 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ALA D 85 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS MET D 86 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ALA D 87 UNP Q9HTL4 EXPRESSION TAG SEQADV 4XWS ASP D 199 UNP Q9HTL4 CYS 199 ENGINEERED MUTATION SEQRES 1 A 227 GLY ALA MET ALA GLN LEU ALA ALA PRO LEU LYS VAL GLY SEQRES 2 A 227 ALA ILE TYR THR ILE GLY PRO TYR LEU PHE PRO HIS LEU SEQRES 3 A 227 ILE PRO GLN LEU HIS ARG VAL ALA PRO GLN MET PRO LEU SEQRES 4 A 227 TYR ILE GLU GLU ASN PHE THR HIS ILE LEU ARG ASP LYS SEQRES 5 A 227 LEU ARG THR GLY GLU LEU ASP ALA ILE ILE ILE ALA LEU SEQRES 6 A 227 PRO PHE GLN GLU ALA ASP VAL LEU THR LYS PRO LEU PHE SEQRES 7 A 227 ASP GLU PRO PHE TYR VAL LEU MET PRO ALA ASP HIS PRO SEQRES 8 A 227 TRP THR ALA LYS ALA SER ILE ASP SER GLU LEU LEU ASN SEQRES 9 A 227 ASP LYS SER LEU LEU LEU LEU GLY GLU GLY HIS ASP PHE SEQRES 10 A 227 ARG ASP GLN VAL LEU GLU ALA CYS PRO THR VAL ARG LYS SEQRES 11 A 227 GLY ASP GLU ASN LYS HIS THR THR VAL GLU SER SER SER SEQRES 12 A 227 LEU GLU THR ILE ARG HIS MET VAL ALA SER GLY LEU GLY SEQRES 13 A 227 VAL SER VAL LEU PRO PHE SER ALA VAL ASP SER HIS HIS SEQRES 14 A 227 TYR ALA PRO GLY VAL ILE GLU VAL ARG PRO PHE SER ALA SEQRES 15 A 227 PRO VAL PRO PHE ARG THR VAL ALA ILE ALA TRP ARG ALA SEQRES 16 A 227 SER PHE PRO ARG PRO ARG ALA ILE GLU VAL LEU ALA ASP SEQRES 17 A 227 SER ILE ARG LEU CYS SER VAL ALA ARG PRO GLN THR GLN SEQRES 18 A 227 GLU GLN PRO GLN ILE ALA SEQRES 1 B 227 GLY ALA MET ALA GLN LEU ALA ALA PRO LEU LYS VAL GLY SEQRES 2 B 227 ALA ILE TYR THR ILE GLY PRO TYR LEU PHE PRO HIS LEU SEQRES 3 B 227 ILE PRO GLN LEU HIS ARG VAL ALA PRO GLN MET PRO LEU SEQRES 4 B 227 TYR ILE GLU GLU ASN PHE THR HIS ILE LEU ARG ASP LYS SEQRES 5 B 227 LEU ARG THR GLY GLU LEU ASP ALA ILE ILE ILE ALA LEU SEQRES 6 B 227 PRO PHE GLN GLU ALA ASP VAL LEU THR LYS PRO LEU PHE SEQRES 7 B 227 ASP GLU PRO PHE TYR VAL LEU MET PRO ALA ASP HIS PRO SEQRES 8 B 227 TRP THR ALA LYS ALA SER ILE ASP SER GLU LEU LEU ASN SEQRES 9 B 227 ASP LYS SER LEU LEU LEU LEU GLY GLU GLY HIS ASP PHE SEQRES 10 B 227 ARG ASP GLN VAL LEU GLU ALA CYS PRO THR VAL ARG LYS SEQRES 11 B 227 GLY ASP GLU ASN LYS HIS THR THR VAL GLU SER SER SER SEQRES 12 B 227 LEU GLU THR ILE ARG HIS MET VAL ALA SER GLY LEU GLY SEQRES 13 B 227 VAL SER VAL LEU PRO PHE SER ALA VAL ASP SER HIS HIS SEQRES 14 B 227 TYR ALA PRO GLY VAL ILE GLU VAL ARG PRO PHE SER ALA SEQRES 15 B 227 PRO VAL PRO PHE ARG THR VAL ALA ILE ALA TRP ARG ALA SEQRES 16 B 227 SER PHE PRO ARG PRO ARG ALA ILE GLU VAL LEU ALA ASP SEQRES 17 B 227 SER ILE ARG LEU CYS SER VAL ALA ARG PRO GLN THR GLN SEQRES 18 B 227 GLU GLN PRO GLN ILE ALA SEQRES 1 C 227 GLY ALA MET ALA GLN LEU ALA ALA PRO LEU LYS VAL GLY SEQRES 2 C 227 ALA ILE TYR THR ILE GLY PRO TYR LEU PHE PRO HIS LEU SEQRES 3 C 227 ILE PRO GLN LEU HIS ARG VAL ALA PRO GLN MET PRO LEU SEQRES 4 C 227 TYR ILE GLU GLU ASN PHE THR HIS ILE LEU ARG ASP LYS SEQRES 5 C 227 LEU ARG THR GLY GLU LEU ASP ALA ILE ILE ILE ALA LEU SEQRES 6 C 227 PRO PHE GLN GLU ALA ASP VAL LEU THR LYS PRO LEU PHE SEQRES 7 C 227 ASP GLU PRO PHE TYR VAL LEU MET PRO ALA ASP HIS PRO SEQRES 8 C 227 TRP THR ALA LYS ALA SER ILE ASP SER GLU LEU LEU ASN SEQRES 9 C 227 ASP LYS SER LEU LEU LEU LEU GLY GLU GLY HIS ASP PHE SEQRES 10 C 227 ARG ASP GLN VAL LEU GLU ALA CYS PRO THR VAL ARG LYS SEQRES 11 C 227 GLY ASP GLU ASN LYS HIS THR THR VAL GLU SER SER SER SEQRES 12 C 227 LEU GLU THR ILE ARG HIS MET VAL ALA SER GLY LEU GLY SEQRES 13 C 227 VAL SER VAL LEU PRO PHE SER ALA VAL ASP SER HIS HIS SEQRES 14 C 227 TYR ALA PRO GLY VAL ILE GLU VAL ARG PRO PHE SER ALA SEQRES 15 C 227 PRO VAL PRO PHE ARG THR VAL ALA ILE ALA TRP ARG ALA SEQRES 16 C 227 SER PHE PRO ARG PRO ARG ALA ILE GLU VAL LEU ALA ASP SEQRES 17 C 227 SER ILE ARG LEU CYS SER VAL ALA ARG PRO GLN THR GLN SEQRES 18 C 227 GLU GLN PRO GLN ILE ALA SEQRES 1 D 227 GLY ALA MET ALA GLN LEU ALA ALA PRO LEU LYS VAL GLY SEQRES 2 D 227 ALA ILE TYR THR ILE GLY PRO TYR LEU PHE PRO HIS LEU SEQRES 3 D 227 ILE PRO GLN LEU HIS ARG VAL ALA PRO GLN MET PRO LEU SEQRES 4 D 227 TYR ILE GLU GLU ASN PHE THR HIS ILE LEU ARG ASP LYS SEQRES 5 D 227 LEU ARG THR GLY GLU LEU ASP ALA ILE ILE ILE ALA LEU SEQRES 6 D 227 PRO PHE GLN GLU ALA ASP VAL LEU THR LYS PRO LEU PHE SEQRES 7 D 227 ASP GLU PRO PHE TYR VAL LEU MET PRO ALA ASP HIS PRO SEQRES 8 D 227 TRP THR ALA LYS ALA SER ILE ASP SER GLU LEU LEU ASN SEQRES 9 D 227 ASP LYS SER LEU LEU LEU LEU GLY GLU GLY HIS ASP PHE SEQRES 10 D 227 ARG ASP GLN VAL LEU GLU ALA CYS PRO THR VAL ARG LYS SEQRES 11 D 227 GLY ASP GLU ASN LYS HIS THR THR VAL GLU SER SER SER SEQRES 12 D 227 LEU GLU THR ILE ARG HIS MET VAL ALA SER GLY LEU GLY SEQRES 13 D 227 VAL SER VAL LEU PRO PHE SER ALA VAL ASP SER HIS HIS SEQRES 14 D 227 TYR ALA PRO GLY VAL ILE GLU VAL ARG PRO PHE SER ALA SEQRES 15 D 227 PRO VAL PRO PHE ARG THR VAL ALA ILE ALA TRP ARG ALA SEQRES 16 D 227 SER PHE PRO ARG PRO ARG ALA ILE GLU VAL LEU ALA ASP SEQRES 17 D 227 SER ILE ARG LEU CYS SER VAL ALA ARG PRO GLN THR GLN SEQRES 18 D 227 GLU GLN PRO GLN ILE ALA HELIX 1 AA1 ILE A 101 TYR A 104 5 4 HELIX 2 AA2 LEU A 105 ALA A 117 1 13 HELIX 3 AA3 PHE A 128 THR A 138 1 11 HELIX 4 AA4 HIS A 173 ALA A 177 5 5 HELIX 5 AA5 ASP A 182 ASN A 187 5 6 HELIX 6 AA6 SER A 226 GLY A 237 1 12 HELIX 7 AA7 ARG A 282 LEU A 295 1 14 HELIX 8 AA8 ILE B 101 TYR B 104 5 4 HELIX 9 AA9 LEU B 105 VAL B 116 1 12 HELIX 10 AB1 PHE B 128 THR B 138 1 11 HELIX 11 AB2 HIS B 173 LYS B 178 5 6 HELIX 12 AB3 ASP B 182 LEU B 186 5 5 HELIX 13 AB4 SER B 226 GLY B 237 1 12 HELIX 14 AB5 ARG B 282 CYS B 296 1 15 HELIX 15 AB6 ILE C 101 ALA C 117 1 17 HELIX 16 AB7 PHE C 128 THR C 138 1 11 HELIX 17 AB8 ASP C 182 LEU C 186 5 5 HELIX 18 AB9 SER C 226 GLY C 237 1 12 HELIX 19 AC1 SER C 246 VAL C 248 5 3 HELIX 20 AC2 ARG C 282 LEU C 295 1 14 HELIX 21 AC3 ILE D 101 TYR D 104 5 4 HELIX 22 AC4 LEU D 105 ALA D 117 1 13 HELIX 23 AC5 PHE D 128 THR D 138 1 11 HELIX 24 AC6 HIS D 173 LYS D 178 5 6 HELIX 25 AC7 ASP D 182 ASN D 187 5 6 HELIX 26 AC8 SER D 226 SER D 236 1 11 HELIX 27 AC9 SER D 246 VAL D 248 5 3 HELIX 28 AD1 ARG D 282 VAL D 298 1 17 SHEET 1 AA1 8 LEU A 122 GLU A 126 0 SHEET 2 AA1 8 LEU A 93 ALA A 97 1 N LEU A 93 O TYR A 123 SHEET 3 AA1 8 ALA A 143 ALA A 147 1 O ALA A 143 N GLY A 96 SHEET 4 AA1 8 PHE A 269 ARG A 277 -1 O ALA A 273 N ILE A 146 SHEET 5 AA1 8 VAL A 155 PRO A 170 -1 N GLU A 163 O ARG A 270 SHEET 6 AA1 8 VAL A 240 PRO A 244 -1 O SER A 241 N LEU A 168 SHEET 7 AA1 8 LEU A 191 LEU A 194 1 N LEU A 192 O VAL A 240 SHEET 8 AA1 8 THR A 220 VAL A 222 1 O THR A 220 N LEU A 191 SHEET 1 AA2 6 LEU A 122 GLU A 126 0 SHEET 2 AA2 6 LEU A 93 ALA A 97 1 N LEU A 93 O TYR A 123 SHEET 3 AA2 6 ALA A 143 ALA A 147 1 O ALA A 143 N GLY A 96 SHEET 4 AA2 6 PHE A 269 ARG A 277 -1 O ALA A 273 N ILE A 146 SHEET 5 AA2 6 VAL A 155 PRO A 170 -1 N GLU A 163 O ARG A 270 SHEET 6 AA2 6 ILE A 258 PRO A 262 -1 O GLU A 259 N MET A 169 SHEET 1 AA3 8 GLU B 125 GLU B 126 0 SHEET 2 AA3 8 VAL B 95 ALA B 97 1 N ALA B 97 O GLU B 125 SHEET 3 AA3 8 ALA B 143 ALA B 147 1 O ILE B 145 N GLY B 96 SHEET 4 AA3 8 PHE B 269 ARG B 277 -1 O ALA B 273 N ILE B 146 SHEET 5 AA3 8 VAL B 155 PRO B 170 -1 N GLU B 163 O ARG B 270 SHEET 6 AA3 8 VAL B 240 PRO B 244 -1 O LEU B 243 N TYR B 166 SHEET 7 AA3 8 LEU B 191 LEU B 194 1 N LEU B 192 O VAL B 240 SHEET 8 AA3 8 THR B 220 VAL B 222 1 O THR B 220 N LEU B 193 SHEET 1 AA4 6 GLU B 125 GLU B 126 0 SHEET 2 AA4 6 VAL B 95 ALA B 97 1 N ALA B 97 O GLU B 125 SHEET 3 AA4 6 ALA B 143 ALA B 147 1 O ILE B 145 N GLY B 96 SHEET 4 AA4 6 PHE B 269 ARG B 277 -1 O ALA B 273 N ILE B 146 SHEET 5 AA4 6 VAL B 155 PRO B 170 -1 N GLU B 163 O ARG B 270 SHEET 6 AA4 6 ILE B 258 ARG B 261 -1 O GLU B 259 N MET B 169 SHEET 1 AA5 8 LEU C 122 GLU C 126 0 SHEET 2 AA5 8 LEU C 93 ALA C 97 1 N LEU C 93 O TYR C 123 SHEET 3 AA5 8 ALA C 143 ALA C 147 1 O ALA C 143 N GLY C 96 SHEET 4 AA5 8 PHE C 269 ARG C 277 -1 O ALA C 273 N ILE C 146 SHEET 5 AA5 8 VAL C 155 PRO C 170 -1 N GLU C 163 O ARG C 270 SHEET 6 AA5 8 VAL C 240 PRO C 244 -1 O LEU C 243 N TYR C 166 SHEET 7 AA5 8 LEU C 191 LEU C 193 1 N LEU C 192 O VAL C 240 SHEET 8 AA5 8 THR C 220 THR C 221 1 O THR C 220 N LEU C 193 SHEET 1 AA6 6 LEU C 122 GLU C 126 0 SHEET 2 AA6 6 LEU C 93 ALA C 97 1 N LEU C 93 O TYR C 123 SHEET 3 AA6 6 ALA C 143 ALA C 147 1 O ALA C 143 N GLY C 96 SHEET 4 AA6 6 PHE C 269 ARG C 277 -1 O ALA C 273 N ILE C 146 SHEET 5 AA6 6 VAL C 155 PRO C 170 -1 N GLU C 163 O ARG C 270 SHEET 6 AA6 6 ILE C 258 PRO C 262 -1 O ARG C 261 N VAL C 167 SHEET 1 AA7 6 LEU D 122 GLU D 126 0 SHEET 2 AA7 6 LEU D 93 ALA D 97 1 N LEU D 93 O TYR D 123 SHEET 3 AA7 6 ALA D 143 ALA D 147 1 O ALA D 143 N GLY D 96 SHEET 4 AA7 6 PHE D 269 ARG D 277 -1 O ALA D 273 N ILE D 146 SHEET 5 AA7 6 VAL D 155 PRO D 170 -1 N GLU D 163 O ARG D 270 SHEET 6 AA7 6 SER D 241 PRO D 244 -1 O SER D 241 N LEU D 168 SHEET 1 AA8 6 LEU D 122 GLU D 126 0 SHEET 2 AA8 6 LEU D 93 ALA D 97 1 N LEU D 93 O TYR D 123 SHEET 3 AA8 6 ALA D 143 ALA D 147 1 O ALA D 143 N GLY D 96 SHEET 4 AA8 6 PHE D 269 ARG D 277 -1 O ALA D 273 N ILE D 146 SHEET 5 AA8 6 VAL D 155 PRO D 170 -1 N GLU D 163 O ARG D 270 SHEET 6 AA8 6 ILE D 258 ARG D 261 -1 O ARG D 261 N VAL D 167 SHEET 1 AA9 2 LEU D 192 LEU D 194 0 SHEET 2 AA9 2 THR D 220 VAL D 222 1 O THR D 220 N LEU D 193 CISPEP 1 LEU A 148 PRO A 149 0 4.29 CISPEP 2 ALA A 265 PRO A 266 0 3.55 CISPEP 3 LEU B 148 PRO B 149 0 3.16 CISPEP 4 GLY B 195 GLU B 196 0 6.36 CISPEP 5 ALA B 265 PRO B 266 0 4.39 CISPEP 6 LEU C 148 PRO C 149 0 4.40 CISPEP 7 LEU D 148 PRO D 149 0 2.61 CISPEP 8 PRO D 255 GLY D 256 0 0.24 CISPEP 9 ALA D 265 PRO D 266 0 0.66 CRYST1 129.942 129.942 135.692 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007696 0.004443 0.000000 0.00000 SCALE2 0.000000 0.008886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007370 0.00000