HEADER IMMUNE SYSTEM 30-JAN-15 4XXD TITLE CRYSTAL STRUCTURE OF MID-REGION AMYLOID BETA CAPTURE BY SOLANEZUMAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB LIGHT CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB HEAVY CHAIN; COMPND 7 CHAIN: B, E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AMYLOID-BETA FRAGMENT; COMPND 11 CHAIN: C, F; COMPND 12 FRAGMENT: UNP RESIDUES 683-699; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: 292-F; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1+; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: 293-F; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1+; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_TAXID: 9606 KEYWDS FAB, AMYLOID-BETA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HERMANS,G.A.N.CRESPI,M.W.PARKER,L.A.MILES REVDAT 4 27-SEP-23 4XXD 1 REMARK REVDAT 3 23-AUG-17 4XXD 1 SOURCE REMARK REVDAT 2 29-JUL-15 4XXD 1 COMPND DBREF REVDAT 1 29-APR-15 4XXD 0 JRNL AUTH G.A.CRESPI,S.J.HERMANS,M.W.PARKER,L.A.MILES JRNL TITL MOLECULAR BASIS FOR MID-REGION AMYLOID-BETA CAPTURE BY JRNL TITL 2 LEADING ALZHEIMER'S DISEASE IMMUNOTHERAPIES. JRNL REF SCI REP V. 5 9649 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 25880481 JRNL DOI 10.1038/SREP09649 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 35908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1793 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.67 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2668 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2668 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2552 REMARK 3 BIN R VALUE (WORKING SET) : 0.2641 REMARK 3 BIN FREE R VALUE : 0.3285 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.35 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 116 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6576 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.15140 REMARK 3 B22 (A**2) : -2.63420 REMARK 3 B33 (A**2) : 10.78560 REMARK 3 B12 (A**2) : -1.88010 REMARK 3 B13 (A**2) : -0.26160 REMARK 3 B23 (A**2) : -3.45840 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.445 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.510 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.298 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.543 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.307 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.863 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.812 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6720 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9140 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2214 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 139 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 981 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6720 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 879 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7293 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.29 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.28 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.11 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|213 } REMARK 3 ORIGIN FOR THE GROUP (A): -110.4889 -8.3760 -23.7279 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: -0.0765 REMARK 3 T33: -0.1041 T12: 0.0318 REMARK 3 T13: -0.0055 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.1270 L22: 1.5898 REMARK 3 L33: 0.8783 L12: -0.3096 REMARK 3 L13: 0.0169 L23: 0.2773 REMARK 3 S TENSOR REMARK 3 S11: 0.1383 S12: 0.0247 S13: 0.1134 REMARK 3 S21: -0.1872 S22: -0.0058 S23: 0.0207 REMARK 3 S31: -0.0974 S32: -0.0276 S33: -0.1324 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|2 - B|208 } REMARK 3 ORIGIN FOR THE GROUP (A): -112.0476 -17.8770 -8.3922 REMARK 3 T TENSOR REMARK 3 T11: -0.1072 T22: -0.0442 REMARK 3 T33: -0.0809 T12: 0.0189 REMARK 3 T13: -0.0671 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.0832 L22: 1.0916 REMARK 3 L33: 1.2569 L12: -0.5296 REMARK 3 L13: -0.2051 L23: -0.3357 REMARK 3 S TENSOR REMARK 3 S11: 0.1208 S12: 0.0137 S13: 0.0029 REMARK 3 S21: -0.0470 S22: 0.0556 S23: 0.1607 REMARK 3 S31: 0.0989 S32: -0.0913 S33: -0.1764 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { D|1 - D|212 } REMARK 3 ORIGIN FOR THE GROUP (A): -115.4315 -29.5628 33.0003 REMARK 3 T TENSOR REMARK 3 T11: -0.0888 T22: -0.0077 REMARK 3 T33: -0.2648 T12: 0.0558 REMARK 3 T13: -0.0287 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.8390 L22: 2.4529 REMARK 3 L33: 2.4243 L12: 0.8194 REMARK 3 L13: -0.1947 L23: 0.7060 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: -0.1890 S13: 0.1153 REMARK 3 S21: 0.0252 S22: 0.0091 S23: 0.2145 REMARK 3 S31: -0.1266 S32: 0.3101 S33: -0.1163 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { E|2 - E|209 } REMARK 3 ORIGIN FOR THE GROUP (A): -113.9074 -26.9586 15.0488 REMARK 3 T TENSOR REMARK 3 T11: -0.1392 T22: 0.0656 REMARK 3 T33: -0.1621 T12: 0.0536 REMARK 3 T13: -0.0255 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.1946 L22: 0.4648 REMARK 3 L33: 1.4542 L12: 0.2672 REMARK 3 L13: -0.2543 L23: -0.1680 REMARK 3 S TENSOR REMARK 3 S11: 0.0877 S12: -0.1085 S13: 0.0740 REMARK 3 S21: -0.0043 S22: -0.0540 S23: 0.0268 REMARK 3 S31: 0.0131 S32: 0.3791 S33: -0.0337 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000206464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 46.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4HIX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM CITRATE, PH 4.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 214 REMARK 465 GLU B 1 REMARK 465 LYS B 124 REMARK 465 SER B 125 REMARK 465 THR B 126 REMARK 465 SER B 127 REMARK 465 GLY B 128 REMARK 465 LYS B 209 REMARK 465 SER B 210 REMARK 465 CYS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 465 HIS B 219 REMARK 465 VAL C 12 REMARK 465 HIS C 13 REMARK 465 HIS C 14 REMARK 465 GLN C 15 REMARK 465 ASN C 27 REMARK 465 LYS C 28 REMARK 465 GLU D 213 REMARK 465 CYS D 214 REMARK 465 GLU E 1 REMARK 465 SER E 123 REMARK 465 LYS E 124 REMARK 465 SER E 125 REMARK 465 THR E 126 REMARK 465 SER E 127 REMARK 465 GLY E 128 REMARK 465 SER E 210 REMARK 465 CYS E 211 REMARK 465 HIS E 212 REMARK 465 HIS E 213 REMARK 465 HIS E 214 REMARK 465 HIS E 215 REMARK 465 HIS E 216 REMARK 465 HIS E 217 REMARK 465 HIS E 218 REMARK 465 HIS E 219 REMARK 465 VAL F 12 REMARK 465 HIS F 13 REMARK 465 HIS F 14 REMARK 465 GLN F 15 REMARK 465 GLY F 25 REMARK 465 SER F 26 REMARK 465 ASN F 27 REMARK 465 LYS F 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO D 40 CD PRO D 40 N 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 211 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 PHE B 27 N - CA - CB ANGL. DEV. = -14.5 DEGREES REMARK 500 PHE B 27 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 LEU D 15 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 LYS D 39 CB - CA - C ANGL. DEV. = 15.4 DEGREES REMARK 500 PRO D 40 CA - N - CD ANGL. DEV. = -9.8 DEGREES REMARK 500 LYS D 50 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 ASN D 138 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 LEU E 184 CB - CA - C ANGL. DEV. = 19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 47 -60.41 -106.26 REMARK 500 TYR A 49 -61.25 -109.61 REMARK 500 VAL A 51 -53.44 68.49 REMARK 500 ASN A 152 -5.93 68.06 REMARK 500 LYS A 190 -63.56 -94.40 REMARK 500 THR B 28 63.30 64.29 REMARK 500 ASP B 61 6.28 -63.64 REMARK 500 SER B 122 -162.58 -126.78 REMARK 500 THR B 186 -71.38 -78.44 REMARK 500 ASP D 28 2.35 -63.58 REMARK 500 GLN D 42 -162.67 -129.36 REMARK 500 VAL D 51 -59.01 73.42 REMARK 500 ALA D 80 5.40 -67.43 REMARK 500 ASN D 152 -11.20 72.00 REMARK 500 LYS D 169 -73.46 -99.56 REMARK 500 LYS D 190 -54.74 -121.58 REMARK 500 SER E 55 -71.79 -69.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 350 DISTANCE = 5.86 ANGSTROMS DBREF 4XXD A 1 214 PDB 4XXD 4XXD 1 214 DBREF 4XXD B 1 219 PDB 4XXD 4XXD 1 219 DBREF 4XXD C 12 28 UNP P05067 A4_HUMAN 683 699 DBREF 4XXD D 1 214 PDB 4XXD 4XXD 1 214 DBREF 4XXD E 1 219 PDB 4XXD 4XXD 1 219 DBREF 4XXD F 12 28 UNP P05067 A4_HUMAN 683 699 SEQRES 1 A 219 ASP VAL VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 A 219 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 A 219 GLN SER LEU ILE TYR SER ASP GLY ASN ALA TYR LEU HIS SEQRES 4 A 219 TRP PHE LEU GLN LYS PRO GLY GLN SER PRO ARG LEU LEU SEQRES 5 A 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 A 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 A 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 A 219 TYR CYS SER GLN SER THR HIS VAL PRO TRP THR PHE GLY SEQRES 9 A 219 GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 A 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 A 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 A 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 A 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 A 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 A 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 A 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 223 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 223 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 223 PHE THR PHE SER ARG TYR SER MET SER TRP VAL ARG GLN SEQRES 4 B 223 ALA PRO GLY LYS GLY LEU GLU LEU VAL ALA GLN ILE ASN SEQRES 5 B 223 SER VAL GLY SER SER THR TYR TYR PRO ASP THR VAL LYS SEQRES 6 B 223 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 223 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 B 223 ALA VAL TYR TYR CYS ALA SER GLY ASP TYR TRP GLY GLN SEQRES 9 B 223 GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 10 B 223 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 11 B 223 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 12 B 223 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 13 B 223 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 14 B 223 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 15 B 223 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 16 B 223 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 17 B 223 LYS VAL GLU PRO LYS SER CYS HIS HIS HIS HIS HIS HIS SEQRES 18 B 223 HIS HIS SEQRES 1 C 17 VAL HIS HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL SEQRES 2 C 17 GLY SER ASN LYS SEQRES 1 D 219 ASP VAL VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 D 219 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 D 219 GLN SER LEU ILE TYR SER ASP GLY ASN ALA TYR LEU HIS SEQRES 4 D 219 TRP PHE LEU GLN LYS PRO GLY GLN SER PRO ARG LEU LEU SEQRES 5 D 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 D 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 D 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 D 219 TYR CYS SER GLN SER THR HIS VAL PRO TRP THR PHE GLY SEQRES 9 D 219 GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 D 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 D 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 D 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 D 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 D 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 D 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 D 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 D 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 E 223 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 E 223 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 E 223 PHE THR PHE SER ARG TYR SER MET SER TRP VAL ARG GLN SEQRES 4 E 223 ALA PRO GLY LYS GLY LEU GLU LEU VAL ALA GLN ILE ASN SEQRES 5 E 223 SER VAL GLY SER SER THR TYR TYR PRO ASP THR VAL LYS SEQRES 6 E 223 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 E 223 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 E 223 ALA VAL TYR TYR CYS ALA SER GLY ASP TYR TRP GLY GLN SEQRES 9 E 223 GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 10 E 223 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 11 E 223 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 12 E 223 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 13 E 223 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 14 E 223 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 15 E 223 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 16 E 223 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 17 E 223 LYS VAL GLU PRO LYS SER CYS HIS HIS HIS HIS HIS HIS SEQRES 18 E 223 HIS HIS SEQRES 1 F 17 VAL HIS HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL SEQRES 2 F 17 GLY SER ASN LYS FORMUL 7 HOH *278(H2 O) HELIX 1 AA1 GLU A 79 VAL A 83 5 5 HELIX 2 AA2 SER A 121 SER A 127 1 7 HELIX 3 AA3 LYS A 183 LYS A 188 1 6 HELIX 4 AA4 THR B 28 TYR B 32 5 5 HELIX 5 AA5 ARG B 83 THR B 87 5 5 HELIX 6 AA6 LYS B 196 ASN B 199 5 4 HELIX 7 AA7 PHE C 20 VAL C 24 5 5 HELIX 8 AA8 SER D 121 LYS D 126 1 6 HELIX 9 AA9 LYS D 183 HIS D 189 1 7 HELIX 10 AB1 THR E 28 TYR E 32 5 5 HELIX 11 AB2 ARG E 83 THR E 87 5 5 HELIX 12 AB3 SER E 151 ALA E 153 5 3 HELIX 13 AB4 PRO E 180 LEU E 184 5 5 HELIX 14 AB5 PHE F 20 VAL F 24 5 5 SHEET 1 AA1 4 THR A 5 SER A 7 0 SHEET 2 AA1 4 ALA A 19 ARG A 24 -1 O SER A 22 N SER A 7 SHEET 3 AA1 4 ASP A 70 ILE A 75 -1 O LEU A 73 N ILE A 21 SHEET 4 AA1 4 PHE A 62 SER A 67 -1 N SER A 65 O THR A 72 SHEET 1 AA2 5 SER A 10 THR A 14 0 SHEET 2 AA2 5 THR A 102 LYS A 107 1 O LYS A 103 N LEU A 11 SHEET 3 AA2 5 GLY A 84 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 AA2 5 LEU A 33 GLN A 38 -1 N PHE A 36 O TYR A 87 SHEET 5 AA2 5 ARG A 45 ILE A 48 -1 O ARG A 45 N LEU A 37 SHEET 1 AA3 4 SER A 10 THR A 14 0 SHEET 2 AA3 4 THR A 102 LYS A 107 1 O LYS A 103 N LEU A 11 SHEET 3 AA3 4 GLY A 84 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 AA3 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA4 4 SER A 114 PHE A 118 0 SHEET 2 AA4 4 THR A 129 PHE A 139 -1 O LEU A 135 N PHE A 116 SHEET 3 AA4 4 TYR A 173 SER A 182 -1 O LEU A 179 N VAL A 132 SHEET 4 AA4 4 SER A 159 VAL A 163 -1 N SER A 162 O SER A 176 SHEET 1 AA5 4 ALA A 153 LEU A 154 0 SHEET 2 AA5 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 AA5 4 VAL A 191 THR A 197 -1 O GLU A 195 N GLN A 147 SHEET 4 AA5 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 AA6 4 GLN B 3 SER B 7 0 SHEET 2 AA6 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 AA6 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AA6 4 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 AA7 6 LEU B 11 VAL B 12 0 SHEET 2 AA7 6 THR B 102 VAL B 106 1 O THR B 105 N VAL B 12 SHEET 3 AA7 6 ALA B 88 ALA B 93 -1 N ALA B 88 O VAL B 104 SHEET 4 AA7 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 AA7 6 GLU B 46 ILE B 51 -1 O VAL B 48 N TRP B 36 SHEET 6 AA7 6 THR B 57 TYR B 58 -1 O TYR B 58 N GLN B 50 SHEET 1 AA8 4 SER B 115 LEU B 119 0 SHEET 2 AA8 4 THR B 130 TYR B 140 -1 O LEU B 136 N PHE B 117 SHEET 3 AA8 4 TYR B 171 PRO B 180 -1 O TYR B 171 N TYR B 140 SHEET 4 AA8 4 VAL B 158 THR B 160 -1 N HIS B 159 O VAL B 176 SHEET 1 AA9 4 SER B 115 LEU B 119 0 SHEET 2 AA9 4 THR B 130 TYR B 140 -1 O LEU B 136 N PHE B 117 SHEET 3 AA9 4 TYR B 171 PRO B 180 -1 O TYR B 171 N TYR B 140 SHEET 4 AA9 4 VAL B 164 LEU B 165 -1 N VAL B 164 O SER B 172 SHEET 1 AB1 3 THR B 146 TRP B 149 0 SHEET 2 AB1 3 TYR B 189 HIS B 195 -1 O ASN B 192 N SER B 148 SHEET 3 AB1 3 THR B 200 VAL B 206 -1 O VAL B 206 N TYR B 189 SHEET 1 AB2 4 MET D 4 SER D 7 0 SHEET 2 AB2 4 ALA D 19 SER D 25 -1 O ARG D 24 N THR D 5 SHEET 3 AB2 4 ASP D 70 ILE D 75 -1 O PHE D 71 N CYS D 23 SHEET 4 AB2 4 PHE D 62 SER D 67 -1 N SER D 67 O ASP D 70 SHEET 1 AB3 5 SER D 10 THR D 14 0 SHEET 2 AB3 5 THR D 102 LYS D 107 1 O GLU D 105 N VAL D 13 SHEET 3 AB3 5 GLY D 84 GLN D 90 -1 N GLY D 84 O VAL D 104 SHEET 4 AB3 5 LEU D 33 GLN D 38 -1 N PHE D 36 O TYR D 87 SHEET 5 AB3 5 PRO D 44 ILE D 48 -1 O ARG D 45 N LEU D 37 SHEET 1 AB4 4 SER D 10 THR D 14 0 SHEET 2 AB4 4 THR D 102 LYS D 107 1 O GLU D 105 N VAL D 13 SHEET 3 AB4 4 GLY D 84 GLN D 90 -1 N GLY D 84 O VAL D 104 SHEET 4 AB4 4 THR D 97 PHE D 98 -1 O THR D 97 N GLN D 90 SHEET 1 AB5 4 SER D 114 PHE D 118 0 SHEET 2 AB5 4 THR D 129 PHE D 139 -1 O VAL D 133 N PHE D 118 SHEET 3 AB5 4 TYR D 173 SER D 182 -1 O LEU D 181 N ALA D 130 SHEET 4 AB5 4 SER D 159 VAL D 163 -1 N GLN D 160 O THR D 178 SHEET 1 AB6 4 ALA D 153 LEU D 154 0 SHEET 2 AB6 4 LYS D 145 VAL D 150 -1 N VAL D 150 O ALA D 153 SHEET 3 AB6 4 TYR D 192 THR D 197 -1 O THR D 197 N LYS D 145 SHEET 4 AB6 4 VAL D 205 PHE D 209 -1 O VAL D 205 N VAL D 196 SHEET 1 AB7 4 GLN E 3 SER E 7 0 SHEET 2 AB7 4 LEU E 18 SER E 25 -1 O SER E 21 N SER E 7 SHEET 3 AB7 4 THR E 77 MET E 82 -1 O MET E 82 N LEU E 18 SHEET 4 AB7 4 PHE E 67 ASP E 72 -1 N SER E 70 O TYR E 79 SHEET 1 AB8 6 GLY E 10 VAL E 12 0 SHEET 2 AB8 6 THR E 102 VAL E 106 1 O THR E 105 N VAL E 12 SHEET 3 AB8 6 ALA E 88 ALA E 93 -1 N TYR E 90 O THR E 102 SHEET 4 AB8 6 MET E 34 GLN E 39 -1 N SER E 35 O ALA E 93 SHEET 5 AB8 6 GLU E 46 ILE E 51 -1 O GLU E 46 N ARG E 38 SHEET 6 AB8 6 THR E 57 TYR E 58 -1 O TYR E 58 N GLN E 50 SHEET 1 AB9 4 SER E 115 LEU E 119 0 SHEET 2 AB9 4 ALA E 131 TYR E 140 -1 O LEU E 136 N PHE E 117 SHEET 3 AB9 4 TYR E 171 VAL E 179 -1 O VAL E 179 N ALA E 131 SHEET 4 AB9 4 VAL E 158 THR E 160 -1 N HIS E 159 O VAL E 176 SHEET 1 AC1 4 SER E 115 LEU E 119 0 SHEET 2 AC1 4 ALA E 131 TYR E 140 -1 O LEU E 136 N PHE E 117 SHEET 3 AC1 4 TYR E 171 VAL E 179 -1 O VAL E 179 N ALA E 131 SHEET 4 AC1 4 VAL E 164 LEU E 165 -1 N VAL E 164 O SER E 172 SHEET 1 AC2 3 THR E 146 TRP E 149 0 SHEET 2 AC2 3 ILE E 190 HIS E 195 -1 O ASN E 192 N SER E 148 SHEET 3 AC2 3 THR E 200 LYS E 205 -1 O THR E 200 N HIS E 195 SSBOND 1 CYS B 135 CYS B 191 1555 1555 2.78 SSBOND 2 CYS E 135 CYS E 191 1555 1555 2.70 CISPEP 1 SER A 7 PRO A 8 0 -1.50 CISPEP 2 VAL A 94 PRO A 95 0 4.25 CISPEP 3 TYR A 140 PRO A 141 0 1.60 CISPEP 4 PHE B 141 PRO B 142 0 0.52 CISPEP 5 GLU B 143 PRO B 144 0 3.96 CISPEP 6 SER D 7 PRO D 8 0 -2.76 CISPEP 7 VAL D 94 PRO D 95 0 8.71 CISPEP 8 TYR D 140 PRO D 141 0 1.10 CISPEP 9 PHE E 141 PRO E 142 0 -3.96 CISPEP 10 GLU E 143 PRO E 144 0 7.03 CRYST1 38.796 73.555 92.118 109.91 93.64 93.31 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025776 0.001491 0.002296 0.00000 SCALE2 0.000000 0.013618 0.005013 0.00000 SCALE3 0.000000 0.000000 0.011591 0.00000