HEADER OXIDOREDUCTASE 02-FEB-15 4XYB TITLE GRANULICELLA M. FORMATE DEHYDROGENASE (FDH) IN COMPLEX WITH NADP(+) TITLE 2 AND NAN3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GRANULICELLA MALLENSIS (STRAIN ATCC BAA-1857 / SOURCE 3 DSM 23137 / MP5ACTX8); SOURCE 4 ORGANISM_TAXID: 682795; SOURCE 5 STRAIN: ATCC BAA-1857 / DSM 23137 / MP5ACTX8; SOURCE 6 GENE: ACIX8_2172; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OXIDOREDUCTASE, FORMATE DEHYDROGENASE, NADP EXPDTA X-RAY DIFFRACTION AUTHOR L.CENDRON,S.FOGAL,E.BENEVENTI,E.BERGANTINO REVDAT 3 08-MAY-24 4XYB 1 REMARK REVDAT 2 11-NOV-15 4XYB 1 JRNL REVDAT 1 08-JUL-15 4XYB 0 JRNL AUTH S.FOGAL,E.BENEVENTI,L.CENDRON,E.BERGANTINO JRNL TITL STRUCTURAL BASIS FOR DOUBLE COFACTOR SPECIFICITY IN A NEW JRNL TITL 2 FORMATE DEHYDROGENASE FROM THE ACIDOBACTERIUM GRANULICELLA JRNL TITL 3 MALLENSIS MP5ACTX8. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 99 9541 2015 JRNL REFN ESSN 1432-0614 JRNL PMID 26104866 JRNL DOI 10.1007/S00253-015-6695-X REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 154343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 7741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.0082 - 4.2843 1.00 5350 284 0.1503 0.1595 REMARK 3 2 4.2843 - 3.4020 1.00 5130 281 0.1324 0.1468 REMARK 3 3 3.4020 - 2.9723 1.00 5070 302 0.1536 0.1687 REMARK 3 4 2.9723 - 2.7008 1.00 5067 265 0.1507 0.1529 REMARK 3 5 2.7008 - 2.5073 1.00 5046 280 0.1508 0.1623 REMARK 3 6 2.5073 - 2.3595 1.00 5019 284 0.1497 0.1717 REMARK 3 7 2.3595 - 2.2414 1.00 5053 239 0.1431 0.1555 REMARK 3 8 2.2414 - 2.1438 1.00 5039 262 0.1361 0.1434 REMARK 3 9 2.1438 - 2.0613 1.00 4977 286 0.1347 0.1576 REMARK 3 10 2.0613 - 1.9902 1.00 5038 260 0.1401 0.1525 REMARK 3 11 1.9902 - 1.9280 1.00 5016 264 0.1354 0.1511 REMARK 3 12 1.9280 - 1.8729 1.00 4972 251 0.1326 0.1444 REMARK 3 13 1.8729 - 1.8236 1.00 5019 269 0.1342 0.1518 REMARK 3 14 1.8236 - 1.7791 1.00 4956 269 0.1354 0.1610 REMARK 3 15 1.7791 - 1.7386 1.00 5053 247 0.1340 0.1517 REMARK 3 16 1.7386 - 1.7016 1.00 4920 290 0.1311 0.1425 REMARK 3 17 1.7016 - 1.6676 1.00 4971 270 0.1281 0.1449 REMARK 3 18 1.6676 - 1.6361 1.00 5020 251 0.1269 0.1481 REMARK 3 19 1.6361 - 1.6069 1.00 4987 232 0.1257 0.1497 REMARK 3 20 1.6069 - 1.5797 1.00 4969 267 0.1247 0.1438 REMARK 3 21 1.5797 - 1.5542 1.00 5011 250 0.1237 0.1342 REMARK 3 22 1.5542 - 1.5303 1.00 4927 265 0.1280 0.1589 REMARK 3 23 1.5303 - 1.5078 0.99 4949 246 0.1284 0.1538 REMARK 3 24 1.5078 - 1.4866 0.98 4845 258 0.1384 0.1753 REMARK 3 25 1.4866 - 1.4665 0.96 4771 274 0.1404 0.1595 REMARK 3 26 1.4665 - 1.4474 0.93 4629 244 0.1450 0.1578 REMARK 3 27 1.4474 - 1.4293 0.91 4527 244 0.1485 0.1593 REMARK 3 28 1.4293 - 1.4121 0.88 4382 190 0.1518 0.1752 REMARK 3 29 1.4121 - 1.3957 0.82 4050 204 0.1592 0.1875 REMARK 3 30 1.3957 - 1.3800 0.78 3839 213 0.1647 0.1854 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6203 REMARK 3 ANGLE : 1.150 8444 REMARK 3 CHIRALITY : 0.076 923 REMARK 3 PLANARITY : 0.006 1110 REMARK 3 DIHEDRAL : 11.981 2297 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206472. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : FOCUSING OPTICS: TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 154449 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 40.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA ACETATE 2.0 M FORMATE PH 4.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.02800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.09550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.90200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.09550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.02800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.90200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 386 REMARK 465 ALA A 387 REMARK 465 PRO A 388 REMARK 465 LYS A 389 REMARK 465 GLY A 390 REMARK 465 LYS A 391 REMARK 465 MET B 1 REMARK 465 GLU B 386 REMARK 465 ALA B 387 REMARK 465 PRO B 388 REMARK 465 LYS B 389 REMARK 465 GLY B 390 REMARK 465 LYS B 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 174 O HOH A 959 1.84 REMARK 500 OE2 GLU B 174 O2 EDO B 404 1.85 REMARK 500 O HOH B 724 O HOH B 967 2.08 REMARK 500 O HOH A 518 O HOH A 961 2.08 REMARK 500 O HOH A 737 O HOH A 814 2.11 REMARK 500 O HOH A 518 O HOH A 560 2.12 REMARK 500 O HOH A 716 O HOH A 852 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 136 ND2 ASN B 23 3644 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 18.42 54.01 REMARK 500 TRP A 100 73.14 -152.79 REMARK 500 LEU A 104 79.29 -103.82 REMARK 500 PHE A 145 -7.90 69.31 REMARK 500 TRP A 178 -74.06 -133.54 REMARK 500 ALA A 199 145.59 84.21 REMARK 500 HIS A 255 31.95 -142.72 REMARK 500 ALA A 284 -88.84 -94.20 REMARK 500 ASP B 44 44.07 -108.42 REMARK 500 LEU B 58 18.61 54.12 REMARK 500 TRP B 100 74.83 -150.15 REMARK 500 PHE B 145 -7.20 68.52 REMARK 500 TRP B 178 -72.80 -136.35 REMARK 500 ALA B 199 146.76 82.19 REMARK 500 HIS B 255 29.70 -141.72 REMARK 500 ALA B 284 -89.90 -95.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 904 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 922 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 924 DISTANCE = 6.40 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZI A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZI B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 DBREF 4XYB A 1 391 UNP G8NVB5 G8NVB5_GRAMM 1 391 DBREF 4XYB B 1 391 UNP G8NVB5 G8NVB5_GRAMM 1 391 SEQRES 1 A 391 MET ALA LYS VAL LEU CYS VAL LEU TYR ASP ASP PRO THR SEQRES 2 A 391 SER GLY TYR PRO PRO LEU TYR ALA ARG ASN ALA ILE PRO SEQRES 3 A 391 LYS ILE GLU ARG TYR PRO ASP GLY GLN THR VAL PRO ASN SEQRES 4 A 391 PRO LYS HIS ILE ASP PHE VAL PRO GLY GLU LEU LEU GLY SEQRES 5 A 391 CYS VAL SER GLY GLU LEU GLY LEU ARG SER TYR LEU GLU SEQRES 6 A 391 ASP LEU GLY HIS THR PHE ILE VAL THR SER ASP LYS GLU SEQRES 7 A 391 GLY PRO ASN SER VAL PHE GLU LYS GLU LEU PRO ASP ALA SEQRES 8 A 391 ASP ILE VAL ILE SER GLN PRO PHE TRP PRO ALA TYR LEU SEQRES 9 A 391 THR ALA GLU ARG ILE ALA LYS ALA LYS LYS LEU LYS LEU SEQRES 10 A 391 ALA LEU THR ALA GLY ILE GLY SER ASP HIS VAL ASP LEU SEQRES 11 A 391 ASN ALA ALA ILE LYS ALA GLY ILE THR VAL ALA GLU GLU SEQRES 12 A 391 THR PHE SER ASN GLY ILE CYS VAL ALA GLU HIS ALA VAL SEQRES 13 A 391 MET MET ILE LEU ALA LEU VAL ARG ASN TYR LEU PRO SER SEQRES 14 A 391 HIS LYS ILE ALA GLU GLU GLY GLY TRP ASN ILE ALA ASP SEQRES 15 A 391 CYS VAL SER ARG SER TYR ASP LEU GLU GLY MET HIS VAL SEQRES 16 A 391 GLY THR VAL ALA ALA GLY ARG ILE GLY LEU ALA VAL LEU SEQRES 17 A 391 ARG ARG LEU LYS PRO PHE ASP VAL LYS LEU HIS TYR THR SEQRES 18 A 391 ALA ARG HIS ARG SER PRO ARG ALA ILE GLU ASP GLU LEU SEQRES 19 A 391 GLY LEU THR TYR HIS ALA THR ALA GLU GLU MET ALA GLU SEQRES 20 A 391 VAL CYS ASP VAL ILE SER ILE HIS ALA PRO LEU TYR PRO SEQRES 21 A 391 ALA THR GLU HIS LEU PHE ASN ALA LYS VAL LEU ASN LYS SEQRES 22 A 391 MET ARG HIS GLY SER TYR LEU VAL ASN THR ALA ARG ALA SEQRES 23 A 391 GLU ILE CYS ASP ARG ASP ASP ILE VAL ARG ALA LEU GLU SEQRES 24 A 391 SER GLY GLN LEU ALA GLY TYR ALA GLY ASP VAL TRP PHE SEQRES 25 A 391 PRO GLN PRO ALA PRO ALA ASN HIS PRO TRP ARG ASN MET SEQRES 26 A 391 PRO HIS ASN GLY MET THR PRO HIS MET SER GLY SER SER SEQRES 27 A 391 LEU SER GLY GLN ALA ARG TYR ALA ALA GLY THR ARG GLU SEQRES 28 A 391 ILE LEU GLU CYS TRP PHE GLU ASN ARG PRO ILE ARG ASP SEQRES 29 A 391 GLU TYR LEU ILE VAL SER ASN GLY LYS LEU ALA GLY THR SEQRES 30 A 391 GLY ALA LYS SER TYR GLY VAL GLY GLU ALA PRO LYS GLY SEQRES 31 A 391 LYS SEQRES 1 B 391 MET ALA LYS VAL LEU CYS VAL LEU TYR ASP ASP PRO THR SEQRES 2 B 391 SER GLY TYR PRO PRO LEU TYR ALA ARG ASN ALA ILE PRO SEQRES 3 B 391 LYS ILE GLU ARG TYR PRO ASP GLY GLN THR VAL PRO ASN SEQRES 4 B 391 PRO LYS HIS ILE ASP PHE VAL PRO GLY GLU LEU LEU GLY SEQRES 5 B 391 CYS VAL SER GLY GLU LEU GLY LEU ARG SER TYR LEU GLU SEQRES 6 B 391 ASP LEU GLY HIS THR PHE ILE VAL THR SER ASP LYS GLU SEQRES 7 B 391 GLY PRO ASN SER VAL PHE GLU LYS GLU LEU PRO ASP ALA SEQRES 8 B 391 ASP ILE VAL ILE SER GLN PRO PHE TRP PRO ALA TYR LEU SEQRES 9 B 391 THR ALA GLU ARG ILE ALA LYS ALA LYS LYS LEU LYS LEU SEQRES 10 B 391 ALA LEU THR ALA GLY ILE GLY SER ASP HIS VAL ASP LEU SEQRES 11 B 391 ASN ALA ALA ILE LYS ALA GLY ILE THR VAL ALA GLU GLU SEQRES 12 B 391 THR PHE SER ASN GLY ILE CYS VAL ALA GLU HIS ALA VAL SEQRES 13 B 391 MET MET ILE LEU ALA LEU VAL ARG ASN TYR LEU PRO SER SEQRES 14 B 391 HIS LYS ILE ALA GLU GLU GLY GLY TRP ASN ILE ALA ASP SEQRES 15 B 391 CYS VAL SER ARG SER TYR ASP LEU GLU GLY MET HIS VAL SEQRES 16 B 391 GLY THR VAL ALA ALA GLY ARG ILE GLY LEU ALA VAL LEU SEQRES 17 B 391 ARG ARG LEU LYS PRO PHE ASP VAL LYS LEU HIS TYR THR SEQRES 18 B 391 ALA ARG HIS ARG SER PRO ARG ALA ILE GLU ASP GLU LEU SEQRES 19 B 391 GLY LEU THR TYR HIS ALA THR ALA GLU GLU MET ALA GLU SEQRES 20 B 391 VAL CYS ASP VAL ILE SER ILE HIS ALA PRO LEU TYR PRO SEQRES 21 B 391 ALA THR GLU HIS LEU PHE ASN ALA LYS VAL LEU ASN LYS SEQRES 22 B 391 MET ARG HIS GLY SER TYR LEU VAL ASN THR ALA ARG ALA SEQRES 23 B 391 GLU ILE CYS ASP ARG ASP ASP ILE VAL ARG ALA LEU GLU SEQRES 24 B 391 SER GLY GLN LEU ALA GLY TYR ALA GLY ASP VAL TRP PHE SEQRES 25 B 391 PRO GLN PRO ALA PRO ALA ASN HIS PRO TRP ARG ASN MET SEQRES 26 B 391 PRO HIS ASN GLY MET THR PRO HIS MET SER GLY SER SER SEQRES 27 B 391 LEU SER GLY GLN ALA ARG TYR ALA ALA GLY THR ARG GLU SEQRES 28 B 391 ILE LEU GLU CYS TRP PHE GLU ASN ARG PRO ILE ARG ASP SEQRES 29 B 391 GLU TYR LEU ILE VAL SER ASN GLY LYS LEU ALA GLY THR SEQRES 30 B 391 GLY ALA LYS SER TYR GLY VAL GLY GLU ALA PRO LYS GLY SEQRES 31 B 391 LYS HET NDP A 401 48 HET AZI A 402 3 HET EDO A 403 10 HET EDO A 404 10 HET EDO A 405 10 HET NDP B 401 48 HET AZI B 402 3 HET EDO B 403 10 HET EDO B 404 10 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM AZI AZIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 AZI 2(N3 1-) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 12 HOH *961(H2 O) HELIX 1 AA1 GLY A 56 GLY A 59 5 4 HELIX 2 AA2 LEU A 60 LEU A 67 1 8 HELIX 3 AA3 SER A 82 LEU A 88 1 7 HELIX 4 AA4 PRO A 89 ALA A 91 5 3 HELIX 5 AA5 THR A 105 ALA A 112 1 8 HELIX 6 AA6 ASP A 129 GLY A 137 1 9 HELIX 7 AA7 ASN A 147 ASN A 165 1 19 HELIX 8 AA8 ASN A 165 GLY A 176 1 12 HELIX 9 AA9 ASN A 179 SER A 185 1 7 HELIX 10 AB1 GLY A 201 LYS A 212 1 12 HELIX 11 AB2 PRO A 213 ASP A 215 5 3 HELIX 12 AB3 PRO A 227 GLY A 235 1 9 HELIX 13 AB4 THR A 241 GLU A 247 1 7 HELIX 14 AB5 TYR A 259 GLU A 263 5 5 HELIX 15 AB6 ASN A 267 ASN A 272 1 6 HELIX 16 AB7 ARG A 285 CYS A 289 5 5 HELIX 17 AB8 ASP A 290 SER A 300 1 11 HELIX 18 AB9 MET A 334 SER A 337 5 4 HELIX 19 AC1 SER A 338 GLU A 358 1 21 HELIX 20 AC2 ARG A 363 GLU A 365 5 3 HELIX 21 AC3 ALA A 375 TYR A 382 1 8 HELIX 22 AC4 GLY B 56 GLY B 59 5 4 HELIX 23 AC5 LEU B 60 LEU B 67 1 8 HELIX 24 AC6 SER B 82 LEU B 88 1 7 HELIX 25 AC7 PRO B 89 ALA B 91 5 3 HELIX 26 AC8 THR B 105 ALA B 112 1 8 HELIX 27 AC9 ASP B 129 GLY B 137 1 9 HELIX 28 AD1 ASN B 147 ASN B 165 1 19 HELIX 29 AD2 ASN B 165 GLY B 176 1 12 HELIX 30 AD3 ASN B 179 SER B 185 1 7 HELIX 31 AD4 GLY B 201 LYS B 212 1 12 HELIX 32 AD5 PRO B 213 ASP B 215 5 3 HELIX 33 AD6 PRO B 227 GLY B 235 1 9 HELIX 34 AD7 THR B 241 CYS B 249 1 9 HELIX 35 AD8 ASN B 267 ASN B 272 1 6 HELIX 36 AD9 ARG B 285 CYS B 289 5 5 HELIX 37 AE1 ASP B 290 SER B 300 1 11 HELIX 38 AE2 MET B 334 SER B 337 5 4 HELIX 39 AE3 SER B 338 GLU B 358 1 21 HELIX 40 AE4 ARG B 363 GLU B 365 5 3 HELIX 41 AE5 ALA B 375 TYR B 382 1 8 SHEET 1 AA1 7 THR A 70 THR A 74 0 SHEET 2 AA1 7 LYS A 3 VAL A 7 1 N CYS A 6 O ILE A 72 SHEET 3 AA1 7 ILE A 93 SER A 96 1 O ILE A 93 N LEU A 5 SHEET 4 AA1 7 LEU A 117 THR A 120 1 O LEU A 119 N VAL A 94 SHEET 5 AA1 7 THR A 139 ALA A 141 1 O THR A 139 N ALA A 118 SHEET 6 AA1 7 LEU A 367 SER A 370 -1 O ILE A 368 N VAL A 140 SHEET 7 AA1 7 LYS A 373 LEU A 374 -1 O LYS A 373 N SER A 370 SHEET 1 AA2 6 THR A 237 HIS A 239 0 SHEET 2 AA2 6 LYS A 217 THR A 221 1 N TYR A 220 O HIS A 239 SHEET 3 AA2 6 HIS A 194 VAL A 198 1 N VAL A 195 O LYS A 217 SHEET 4 AA2 6 VAL A 251 ILE A 254 1 O VAL A 251 N GLY A 196 SHEET 5 AA2 6 SER A 278 ASN A 282 1 O VAL A 281 N ILE A 252 SHEET 6 AA2 6 LEU A 303 GLY A 308 1 O ALA A 304 N SER A 278 SHEET 1 AA3 7 THR B 70 THR B 74 0 SHEET 2 AA3 7 LYS B 3 VAL B 7 1 N CYS B 6 O ILE B 72 SHEET 3 AA3 7 ILE B 93 SER B 96 1 O ILE B 93 N LEU B 5 SHEET 4 AA3 7 LEU B 117 THR B 120 1 O LEU B 119 N VAL B 94 SHEET 5 AA3 7 THR B 139 ALA B 141 1 O THR B 139 N ALA B 118 SHEET 6 AA3 7 LEU B 367 SER B 370 -1 O ILE B 368 N VAL B 140 SHEET 7 AA3 7 LYS B 373 LEU B 374 -1 O LYS B 373 N SER B 370 SHEET 1 AA4 6 THR B 237 HIS B 239 0 SHEET 2 AA4 6 LYS B 217 THR B 221 1 N TYR B 220 O HIS B 239 SHEET 3 AA4 6 HIS B 194 VAL B 198 1 N VAL B 195 O LYS B 217 SHEET 4 AA4 6 VAL B 251 ILE B 254 1 O VAL B 251 N GLY B 196 SHEET 5 AA4 6 SER B 278 ASN B 282 1 O VAL B 281 N ILE B 252 SHEET 6 AA4 6 LEU B 303 GLY B 308 1 O ALA B 304 N SER B 278 CISPEP 1 TYR A 16 PRO A 17 0 0.23 CISPEP 2 PHE A 312 PRO A 313 0 -7.31 CISPEP 3 GLN A 314 PRO A 315 0 3.92 CISPEP 4 TYR B 16 PRO B 17 0 -0.68 CISPEP 5 PHE B 312 PRO B 313 0 -8.59 CISPEP 6 GLN B 314 PRO B 315 0 3.74 SITE 1 AC1 37 PHE A 99 ILE A 123 ASN A 147 VAL A 151 SITE 2 AC1 37 ALA A 199 GLY A 201 ARG A 202 ILE A 203 SITE 3 AC1 37 ALA A 222 ARG A 223 HIS A 224 HIS A 255 SITE 4 AC1 37 PRO A 257 TYR A 259 THR A 262 THR A 283 SITE 5 AC1 37 ALA A 284 ARG A 285 ASP A 309 HIS A 333 SITE 6 AC1 37 SER A 335 GLY A 336 SER A 381 TYR A 382 SITE 7 AC1 37 AZI A 402 HOH A 537 HOH A 628 HOH A 632 SITE 8 AC1 37 HOH A 638 HOH A 650 HOH A 656 HOH A 670 SITE 9 AC1 37 HOH A 674 HOH A 679 HOH A 682 HOH A 736 SITE 10 AC1 37 HOH A 774 SITE 1 AC2 8 PRO A 98 PHE A 99 GLY A 122 ILE A 123 SITE 2 AC2 8 ASN A 147 ARG A 285 HIS A 333 NDP A 401 SITE 1 AC3 4 ARG A 22 ASN A 23 GLY A 48 HOH B 666 SITE 1 AC4 8 ASN A 39 GLU A 351 GLU A 354 CYS A 355 SITE 2 AC4 8 ARG A 360 HOH A 520 HOH A 550 ARG B 30 SITE 1 AC5 5 ARG A 225 HOH A 529 HOH A 558 PRO B 317 SITE 2 AC5 5 ALA B 318 SITE 1 AC6 38 PHE B 99 ILE B 123 ASN B 147 VAL B 151 SITE 2 AC6 38 ALA B 199 GLY B 201 ARG B 202 ILE B 203 SITE 3 AC6 38 ALA B 222 ARG B 223 HIS B 224 HIS B 255 SITE 4 AC6 38 PRO B 257 TYR B 259 THR B 262 THR B 283 SITE 5 AC6 38 ALA B 284 ARG B 285 ASP B 309 HIS B 333 SITE 6 AC6 38 SER B 335 GLY B 336 SER B 381 TYR B 382 SITE 7 AC6 38 AZI B 402 HOH B 639 HOH B 646 HOH B 651 SITE 8 AC6 38 HOH B 656 HOH B 667 HOH B 672 HOH B 715 SITE 9 AC6 38 HOH B 811 HOH B 814 HOH B 817 HOH B 856 SITE 10 AC6 38 HOH B 871 HOH B 969 SITE 1 AC7 8 PRO B 98 PHE B 99 GLY B 122 ILE B 123 SITE 2 AC7 8 ASN B 147 ARG B 285 HIS B 333 NDP B 401 SITE 1 AC8 8 ARG A 30 ASN B 39 GLU B 351 GLU B 354 SITE 2 AC8 8 CYS B 355 ARG B 360 HOH B 521 HOH B 535 SITE 1 AC9 3 HIS B 170 GLU B 174 HOH B 851 CRYST1 58.056 113.804 116.191 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017225 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008607 0.00000