HEADER TRANSFERASE 03-FEB-15 4XYW TITLE GLYCOSYLTRANSFERASES WBNH COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-ANTIGEN BIOSYNTHESIS GLYCOSYLTRANSFERASE WBNH; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-GALNAC:ALPHA-D-GALNAC-DIPHOSPHOUNDECAPRENOL ALPHA-1,3-N- COMPND 5 ACETYLGALACTOSAMINYLTRANSFERASE; COMPND 6 EC: 2.4.1.306; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: WBNH, WBWH, WCMA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASES WBNH GT4, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.LI REVDAT 2 20-MAR-24 4XYW 1 REMARK REVDAT 1 10-FEB-16 4XYW 0 JRNL AUTH F.LI JRNL TITL GLYCOSYLTRANSFERASES WBNH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 23416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.9652 - 4.5700 0.94 2466 105 0.1923 0.1893 REMARK 3 2 4.5700 - 3.6301 0.99 2493 135 0.1723 0.2202 REMARK 3 3 3.6301 - 3.1721 1.00 2493 131 0.2113 0.2612 REMARK 3 4 3.1721 - 2.8824 1.00 2464 158 0.2292 0.2759 REMARK 3 5 2.8824 - 2.6760 1.00 2493 120 0.2345 0.2507 REMARK 3 6 2.6760 - 2.5184 1.00 2485 133 0.2417 0.3045 REMARK 3 7 2.5184 - 2.3923 1.00 2432 158 0.2434 0.2754 REMARK 3 8 2.3923 - 2.2882 1.00 2469 137 0.2298 0.2474 REMARK 3 9 2.2882 - 2.2002 0.99 2419 125 0.2425 0.2886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.037 2587 REMARK 3 ANGLE : 2.712 3500 REMARK 3 CHIRALITY : 0.377 403 REMARK 3 PLANARITY : 0.007 438 REMARK 3 DIHEDRAL : 14.825 918 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.6946 21.5194 78.3253 REMARK 3 T TENSOR REMARK 3 T11: 0.4448 T22: 0.3446 REMARK 3 T33: 0.3559 T12: 0.0124 REMARK 3 T13: 0.0547 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 4.4906 L22: 1.4610 REMARK 3 L33: 0.6486 L12: 1.6934 REMARK 3 L13: 0.2750 L23: -0.2419 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: 0.0969 S13: 0.1408 REMARK 3 S21: -0.0730 S22: 0.0676 S23: -0.0056 REMARK 3 S31: -0.0223 S32: -0.0586 S33: -0.0024 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23421 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LI2SO4, 0.1M CAPS, 1.2M SODIUM REMARK 280 PHOSPHATE MONOBASIC, 0.8M POTASSIUM PHOSPHATE DIBASIC, PH 10.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 57.15550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.99874 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 61.15967 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 57.15550 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.99874 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 61.15967 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 57.15550 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.99874 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 61.15967 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 57.15550 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.99874 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.15967 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 57.15550 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.99874 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.15967 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 57.15550 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.99874 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 61.15967 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.99749 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 122.31933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 65.99749 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 122.31933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 65.99749 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 122.31933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 65.99749 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 122.31933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 65.99749 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 122.31933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 65.99749 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 122.31933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 115 REMARK 465 ASN A 116 REMARK 465 GLY A 117 REMARK 465 GLY A 118 REMARK 465 ARG A 119 REMARK 465 LEU A 120 REMARK 465 ASN A 174 REMARK 465 ASN A 175 REMARK 465 GLY A 214 REMARK 465 GLY A 215 REMARK 465 GLU A 216 REMARK 465 ARG A 217 REMARK 465 LEU A 218 REMARK 465 GLU A 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 PHE A 124 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 GLN A 224 CG CD OE1 NE2 REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 ASN A 239 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 553 O HOH A 557 1.97 REMARK 500 O HOH A 508 O HOH A 509 1.97 REMARK 500 O HOH A 510 O HOH A 516 2.06 REMARK 500 O HOH A 538 O HOH A 539 2.13 REMARK 500 O LYS A 176 NH2 ARG A 313 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 112 N - CA - C ANGL. DEV. = -19.3 DEGREES REMARK 500 CYS A 113 N - CA - C ANGL. DEV. = -24.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 86 152.16 90.95 REMARK 500 SER A 112 109.33 -55.37 REMARK 500 CYS A 113 -56.89 -136.70 REMARK 500 SER A 122 2.75 -67.60 REMARK 500 LYS A 223 22.75 -140.33 REMARK 500 ASN A 239 53.79 -110.13 REMARK 500 ASN A 293 47.06 -79.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 516 DISTANCE = 6.52 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 DBREF 4XYW A 1 338 UNP P0DMP6 WBNH_ECOLX 1 338 SEQADV 4XYW ASN A 144 UNP P0DMP6 SER 144 ENGINEERED MUTATION SEQRES 1 A 338 MET LYS ASN VAL GLY PHE ILE VAL THR LYS SER GLU ILE SEQRES 2 A 338 GLY GLY ALA GLN THR TRP VAL ASN GLU ILE SER ASN LEU SEQRES 3 A 338 ILE LYS GLU GLU CYS ASN ILE PHE LEU ILE THR SER GLU SEQRES 4 A 338 GLU GLY TRP LEU THR HIS LYS ASP VAL PHE ALA GLY VAL SEQRES 5 A 338 PHE VAL ILE PRO GLY ILE LYS LYS TYR PHE ASP PHE LEU SEQRES 6 A 338 THR LEU PHE LYS LEU ARG LYS ILE LEU LYS GLU ASN ASN SEQRES 7 A 338 ILE SER THR LEU ILE ALA SER SER ALA ASN ALA GLY VAL SEQRES 8 A 338 TYR ALA ARG LEU VAL ARG LEU LEU VAL ASP PHE LYS CYS SEQRES 9 A 338 ILE TYR VAL SER HIS GLY TRP SER CYS LEU TYR ASN GLY SEQRES 10 A 338 GLY ARG LEU LYS SER ILE PHE CYS ILE VAL GLU LYS TYR SEQRES 11 A 338 LEU SER LEU LEU THR ASP VAL ILE TRP CYS VAL SER LYS SEQRES 12 A 338 ASN ASP GLU LYS LYS ALA ILE GLU ASN ILE GLY ILE LYS SEQRES 13 A 338 GLU PRO LYS ILE ILE THR VAL SER ASN SER VAL PRO GLN SEQRES 14 A 338 MET PRO ARG CYS ASN ASN LYS GLN LEU GLN TYR LYS VAL SEQRES 15 A 338 LEU PHE VAL GLY ARG LEU THR HIS PRO LYS ARG PRO GLU SEQRES 16 A 338 LEU LEU ALA ASN VAL ILE SER LYS LYS PRO GLN TYR SER SEQRES 17 A 338 LEU HIS ILE VAL GLY GLY GLY GLU ARG LEU GLU SER LEU SEQRES 18 A 338 LYS LYS GLN PHE SER GLU CYS GLU ASN ILE HIS PHE LEU SEQRES 19 A 338 GLY GLU VAL ASN ASN PHE TYR ASN TYR HIS GLU TYR ASP SEQRES 20 A 338 LEU PHE SER LEU ILE SER ASP SER GLU GLY LEU PRO MET SEQRES 21 A 338 SER GLY LEU GLU ALA HIS THR ALA ALA ILE PRO LEU LEU SEQRES 22 A 338 LEU SER ASP VAL GLY GLY CYS PHE GLU LEU ILE GLU GLY SEQRES 23 A 338 ASN GLY LEU LEU VAL GLU ASN THR GLU ASP ASP ILE GLY SEQRES 24 A 338 TYR LYS LEU ASP LYS ILE PHE ASP ASP TYR GLU ASN TYR SEQRES 25 A 338 ARG GLU GLN ALA ILE ARG ALA SER GLY LYS PHE VAL ILE SEQRES 26 A 338 GLU ASN TYR ALA SER ALA TYR LYS SER ILE ILE LEU GLY HET SO4 A 401 5 HET SO4 A 402 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *60(H2 O) HELIX 1 AA1 GLY A 14 LYS A 28 1 15 HELIX 2 AA2 GLY A 41 LYS A 46 5 6 HELIX 3 AA3 PRO A 56 LYS A 60 5 5 HELIX 4 AA4 ASP A 63 ASN A 77 1 15 HELIX 5 AA5 SER A 86 VAL A 96 1 11 HELIX 6 AA6 ARG A 97 LEU A 99 5 3 HELIX 7 AA7 HIS A 109 SER A 112 5 4 HELIX 8 AA8 SER A 122 LEU A 133 1 12 HELIX 9 AA9 SER A 142 ASN A 152 1 11 HELIX 10 AB1 LYS A 156 PRO A 158 5 3 HELIX 11 AB2 ARG A 193 LYS A 203 1 11 HELIX 12 AB3 ASN A 242 TYR A 246 5 5 HELIX 13 AB4 PRO A 259 ALA A 268 1 10 HELIX 14 AB5 GLY A 279 ILE A 284 5 6 HELIX 15 AB6 THR A 294 ASP A 308 1 15 HELIX 16 AB7 ASP A 308 SER A 320 1 13 HELIX 17 AB8 VAL A 324 ASN A 327 5 4 HELIX 18 AB9 TYR A 328 GLY A 338 1 11 SHEET 1 AA1 7 GLY A 51 VAL A 54 0 SHEET 2 AA1 7 CYS A 31 THR A 37 1 N LEU A 35 O PHE A 53 SHEET 3 AA1 7 LYS A 2 ILE A 7 1 N VAL A 4 O ASN A 32 SHEET 4 AA1 7 THR A 81 SER A 85 1 O ILE A 83 N GLY A 5 SHEET 5 AA1 7 LYS A 103 VAL A 107 1 O ILE A 105 N ALA A 84 SHEET 6 AA1 7 VAL A 137 CYS A 140 1 O TRP A 139 N TYR A 106 SHEET 7 AA1 7 ILE A 160 THR A 162 1 O ILE A 161 N ILE A 138 SHEET 1 AA2 6 ILE A 231 GLY A 235 0 SHEET 2 AA2 6 SER A 208 VAL A 212 1 N ILE A 211 O HIS A 232 SHEET 3 AA2 6 LYS A 181 VAL A 185 1 N PHE A 184 O VAL A 212 SHEET 4 AA2 6 LEU A 248 LEU A 251 1 O SER A 250 N LEU A 183 SHEET 5 AA2 6 LEU A 272 SER A 275 1 O LEU A 273 N PHE A 249 SHEET 6 AA2 6 GLY A 288 VAL A 291 1 O VAL A 291 N LEU A 274 CISPEP 1 HIS A 190 PRO A 191 0 8.87 CISPEP 2 SER A 220 LEU A 221 0 -9.31 SITE 1 AC1 4 SER A 86 ALA A 87 SER A 112 HOH A 520 SITE 1 AC2 2 GLN A 179 ARG A 318 CRYST1 114.311 114.311 183.479 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008748 0.005051 0.000000 0.00000 SCALE2 0.000000 0.010101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005450 0.00000