HEADER TRANSFERASE 04-FEB-15 4XZK TITLE CRYSTAL STRUCTURE OF ADP-RIBOSYLTRANSFERASE VIS IN COMPLEX WITH TITLE 2 AGMATINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NAD(+)--ARGININE ADP-RIBOSYLTRANSFERASE VIS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE MONO(ADP-RIBOSYL)TRANSFERASE,MART,TOXIN VIS; COMPND 5 EC: 2.4.2.31; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO SPLENDIDUS; SOURCE 3 ORGANISM_TAXID: 29497; SOURCE 4 GENE: V12B01_18061; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 28-MHL KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.PFOH,R.RAVULAPALLI,A.R.MERRILL,E.F.PAI REVDAT 3 27-SEP-23 4XZK 1 REMARK REVDAT 2 22-NOV-17 4XZK 1 REMARK REVDAT 1 20-JAN-16 4XZK 0 JRNL AUTH R.RAVULAPALLI,D.VISSCHEDYK,R.PFOH,M.LOGO,R.J.FIELDHOUSE, JRNL AUTH 2 E.F.PAI,A.R.MERRILL JRNL TITL VIS TOXIN, AN ADP-RIBOSYLTRANSFERASE FROM VIBRIO SPLENDIDUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1242 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1693 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1666 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.999 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1747 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1650 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2370 ; 1.624 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3795 ; 0.793 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 222 ; 5.858 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;31.196 ;24.430 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 298 ;11.885 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.406 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 268 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1991 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 401 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1528 47.0804 7.8278 REMARK 3 T TENSOR REMARK 3 T11: 0.0649 T22: 0.0363 REMARK 3 T33: 0.0172 T12: -0.0025 REMARK 3 T13: 0.0094 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.1207 L22: 0.8250 REMARK 3 L33: 1.2032 L12: -0.7463 REMARK 3 L13: 0.4199 L23: 0.1650 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.0978 S13: 0.1668 REMARK 3 S21: -0.1878 S22: -0.0545 S23: -0.0934 REMARK 3 S31: -0.1521 S32: 0.1807 S33: 0.0553 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 700 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7626 36.5294 14.3019 REMARK 3 T TENSOR REMARK 3 T11: 0.0447 T22: 0.0106 REMARK 3 T33: 0.0075 T12: -0.0010 REMARK 3 T13: 0.0099 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.4491 L22: 0.8501 REMARK 3 L33: 0.9146 L12: -0.0828 REMARK 3 L13: 0.2265 L23: -0.3656 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0154 S13: -0.0161 REMARK 3 S21: -0.0099 S22: 0.0088 S23: 0.0416 REMARK 3 S31: 0.0334 S32: -0.0257 S33: -0.0021 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4XZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000201942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : MULTI-LAYER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XPREP REMARK 200 DATA SCALING SOFTWARE : XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.940 REMARK 200 R MERGE (I) : 0.05080 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.86 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 4Y1W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% JEFFAMINE ED-2001, 0.1 M HEPES, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.92000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.43500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.43500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.92000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 ARG A 12 REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 LEU A 15 REMARK 465 TYR A 16 REMARK 465 PHE A 17 REMARK 465 GLN A 18 REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 GLY A 50 REMARK 465 TRP A 51 REMARK 465 ARG A 52 REMARK 465 GLU A 185 REMARK 465 TYR A 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 55 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 ASN A 159 CG OD1 ND2 REMARK 470 PRO A 161 CG CD REMARK 470 GLN A 162 CG CD OE1 NE2 REMARK 470 ARG A 163 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 210 CG OD1 ND2 REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 ALA A 240 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 210 -14.62 76.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG2 A 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XZJ RELATED DB: PDB DBREF 4XZK A 20 240 UNP A3UNN4 VIS_VIBSP 20 240 SEQADV 4XZK MET A 2 UNP A3UNN4 INITIATING METHIONINE SEQADV 4XZK HIS A 3 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK HIS A 4 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK HIS A 5 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK HIS A 6 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK HIS A 7 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK HIS A 8 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK SER A 9 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK SER A 10 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK GLY A 11 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK ARG A 12 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK GLU A 13 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK ASN A 14 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK LEU A 15 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK TYR A 16 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK PHE A 17 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK GLN A 18 UNP A3UNN4 EXPRESSION TAG SEQADV 4XZK GLY A 19 UNP A3UNN4 EXPRESSION TAG SEQRES 1 A 239 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 239 LEU TYR PHE GLN GLY PRO PHE ASP ALA ILE LYS GLN PRO SEQRES 3 A 239 ASN ARG SER GLU GLU GLU VAL THR GLN LEU ALA GLU ASP SEQRES 4 A 239 PHE LYS ASP TRP SER LYS ALA SER ASN GLY TRP ARG TYR SEQRES 5 A 239 SER PHE ILE THR ALA ASN GLU LYS GLU ALA VAL GLU ASP SEQRES 6 A 239 PHE SER ILE SER GLY TYR GLN THR ALA ASN ASP TYR LEU SEQRES 7 A 239 ARG ALA THR ASP THR SER THR TRP GLY VAL ALA GLY ALA SEQRES 8 A 239 ASP ALA ARG GLN TYR ILE ARG THR VAL LYS SER ALA LEU SEQRES 9 A 239 ASN LYS LEU PRO LYS TYR LYS GLY THR ALA TYR ARG GLY SEQRES 10 A 239 THR TRP VAL LYS LEU SER LEU LEU ASN LYS LEU GLU GLU SEQRES 11 A 239 GLY ASP VAL LEU VAL GLU PRO ALA PHE THR SER THR SER SEQRES 12 A 239 THR LEU PRO GLU VAL ALA LYS ARG PHE SER VAL VAL HIS SEQRES 13 A 239 PRO ASN SER PRO GLN ARG LEU LYS ARG VAL LEU PHE GLU SEQRES 14 A 239 VAL LYS ILE ASN GLN GLY GLY HIS THR ILE ALA GLY LEU SEQRES 15 A 239 SER GLU TYR SER LYS GLU ALA GLU VAL LEU PHE ALA PRO SEQRES 16 A 239 ASN ALA HIS PHE ARG ILE THR GLN ILE GLU ARG THR SER SEQRES 17 A 239 ASN HIS THR TYR ILE GLY VAL GLU THR VAL LYS ALA SER SEQRES 18 A 239 ALA VAL LYS ASN THR GLN LYS TYR ASN LEU TYR SER GLY SEQRES 19 A 239 GLU GLU VAL GLU ALA HET AG2 A 700 9 HETNAM AG2 AGMATINE HETSYN AG2 (4-AMINOBUTYL)GUANIDINE FORMUL 2 AG2 C5 H14 N4 FORMUL 3 HOH *105(H2 O) HELIX 1 AA1 PHE A 21 GLN A 26 1 6 HELIX 2 AA2 SER A 30 SER A 48 1 19 HELIX 3 AA3 THR A 57 SER A 70 1 14 HELIX 4 AA4 SER A 70 ALA A 81 1 12 HELIX 5 AA5 GLY A 88 LEU A 108 1 21 HELIX 6 AA6 LEU A 123 ASN A 127 1 5 HELIX 7 AA7 LEU A 146 PHE A 153 1 8 HELIX 8 AA8 ALA A 181 SER A 184 5 4 HELIX 9 AA9 LYS A 220 VAL A 224 5 5 SHEET 1 AA1 7 GLY A 113 LYS A 122 0 SHEET 2 AA1 7 LEU A 164 ILE A 173 -1 O PHE A 169 N ARG A 117 SHEET 3 AA1 7 THR A 212 VAL A 219 1 O VAL A 216 N LYS A 172 SHEET 4 AA1 7 ALA A 198 ARG A 207 -1 N ARG A 201 O GLU A 217 SHEET 5 AA1 7 VAL A 134 GLU A 137 -1 N LEU A 135 O PHE A 200 SHEET 6 AA1 7 LYS A 229 ASN A 231 1 O TYR A 230 N VAL A 136 SHEET 7 AA1 7 GLU A 237 VAL A 238 -1 O VAL A 238 N LYS A 229 SHEET 1 AA2 3 THR A 141 SER A 144 0 SHEET 2 AA2 3 GLU A 191 PHE A 194 -1 O VAL A 192 N THR A 143 SHEET 3 AA2 3 HIS A 178 THR A 179 -1 N HIS A 178 O LEU A 193 SITE 1 AC1 8 SER A 68 ARG A 117 GLY A 118 SER A 142 SITE 2 AC1 8 PHE A 153 GLU A 189 GLU A 191 HOH A 802 CRYST1 47.840 52.090 102.870 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009721 0.00000