HEADER APOPTOSIS 04-FEB-15 4XZS TITLE CRYSTAL STRUCTURE OF TRIAP1-MBP FUSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,TP53-REGULATED COMPND 3 INHIBITOR OF APOPTOSIS 1; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN,PROTEIN 15E1.1,WF-1, COMPND 6 P53-INDUCIBLE CELL-SURVIVAL FACTOR,P53CSV; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 83333, 9606; SOURCE 5 GENE: MALE, B4034, JW3994, TRIAP1, 15E1.1, HSPC132; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APOPTOSIS, LIPID, CX9CX MOTIF, CANCER, MITOCHONDRIA, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR X.MILIARA,J.A.GARNETT,F.ABID-ALI,I.PEREZ-DORADO,S.J.MATTHEWS REVDAT 3 10-JAN-24 4XZS 1 HETSYN LINK REVDAT 2 29-JUL-20 4XZS 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 20-JAN-16 4XZS 0 JRNL AUTH X.MILIARA,J.A.GARNETT,T.TATSUTA,F.ABID ALI,H.BALDIE, JRNL AUTH 2 I.PEREZ-DORADO,P.SIMPSON,E.YAGUE,T.LANGER,S.MATTHEWS JRNL TITL STRUCTURAL INSIGHT INTO THE TRIAP1/PRELI-LIKE DOMAIN FAMILY JRNL TITL 2 OF MITOCHONDRIAL PHOSPHOLIPID TRANSFER COMPLEXES. JRNL REF EMBO REP. V. 16 824 2015 JRNL REFN ESSN 1469-3178 JRNL PMID 26071602 JRNL DOI 10.15252/EMBR.201540229 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 43048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2246 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6446 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.278 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6696 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6238 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9120 ; 1.470 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14392 ; 3.863 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 851 ; 5.664 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;36.067 ;25.705 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1061 ;15.037 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.402 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 998 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7696 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1476 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3377 ; 1.397 ; 3.066 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3376 ; 1.397 ; 3.065 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4222 ; 2.249 ; 4.591 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4223 ; 2.249 ; 4.592 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3319 ; 2.164 ; 3.324 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3320 ; 2.164 ; 3.325 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4894 ; 3.568 ; 4.861 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7873 ; 5.023 ;25.001 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7819 ; 4.993 ;24.968 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 419 B 1 419 2582 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 421 REMARK 3 ORIGIN FOR THE GROUP (A): -41.2300 0.4250 22.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.0962 T22: 0.0425 REMARK 3 T33: 0.0089 T12: 0.0139 REMARK 3 T13: -0.0210 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.3277 L22: 0.9762 REMARK 3 L33: 0.9939 L12: 0.0262 REMARK 3 L13: 0.1324 L23: -0.3302 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: 0.0018 S13: 0.0285 REMARK 3 S21: 0.0652 S22: -0.0179 S23: -0.0569 REMARK 3 S31: -0.0631 S32: 0.0131 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 420 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9030 0.5150 22.8740 REMARK 3 T TENSOR REMARK 3 T11: 0.1455 T22: 0.0632 REMARK 3 T33: 0.0219 T12: 0.0165 REMARK 3 T13: -0.0515 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.3025 L22: 1.0197 REMARK 3 L33: 0.7914 L12: -0.0639 REMARK 3 L13: 0.1218 L23: -0.3942 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: 0.0302 S13: 0.0154 REMARK 3 S21: 0.0514 S22: -0.0210 S23: -0.0032 REMARK 3 S31: -0.0018 S32: 0.0355 S33: 0.0340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 48.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HSJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 25% (W/V) PEG REMARK 280 4000, 18% (W/V) MPD, 200 MM AMMONIUM SULPHATE, PH 4.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.00500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 422 REMARK 465 GLU A 423 REMARK 465 LYS A 424 REMARK 465 GLU A 425 REMARK 465 ILE A 426 REMARK 465 PRO A 427 REMARK 465 ILE A 428 REMARK 465 GLU A 429 REMARK 465 GLY A 430 REMARK 465 LEU A 431 REMARK 465 GLU A 432 REMARK 465 PHE A 433 REMARK 465 MET A 434 REMARK 465 GLY A 435 REMARK 465 HIS A 436 REMARK 465 GLY A 437 REMARK 465 LYS A 438 REMARK 465 GLU A 439 REMARK 465 LYS A 440 REMARK 465 PRO A 441 REMARK 465 GLU A 442 REMARK 465 ASN A 443 REMARK 465 SER A 444 REMARK 465 SER A 445 REMARK 465 MET B 0 REMARK 465 ILE B 421 REMARK 465 LYS B 422 REMARK 465 GLU B 423 REMARK 465 LYS B 424 REMARK 465 GLU B 425 REMARK 465 ILE B 426 REMARK 465 PRO B 427 REMARK 465 ILE B 428 REMARK 465 GLU B 429 REMARK 465 GLY B 430 REMARK 465 LEU B 431 REMARK 465 GLU B 432 REMARK 465 PHE B 433 REMARK 465 MET B 434 REMARK 465 GLY B 435 REMARK 465 HIS B 436 REMARK 465 GLY B 437 REMARK 465 LYS B 438 REMARK 465 GLU B 439 REMARK 465 LYS B 440 REMARK 465 PRO B 441 REMARK 465 GLU B 442 REMARK 465 ASN B 443 REMARK 465 SER B 444 REMARK 465 SER B 445 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 1 CG CD CE NZ REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 LYS B 1 CG CD CE NZ REMARK 470 LYS B 140 CG CD CE NZ REMARK 470 LYS B 175 CG CD CE NZ REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 LYS B 295 CG CD CE NZ REMARK 470 GLU B 322 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 387 SG CYS A 406 1.64 REMARK 500 OD2 ASP B 65 O3 GLC D 2 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 -166.73 -105.45 REMARK 500 ASP A 55 -167.37 -104.65 REMARK 500 LEU A 122 76.29 -152.07 REMARK 500 ALA A 168 -85.21 -112.00 REMARK 500 CYS A 406 31.86 -97.35 REMARK 500 ASP B 55 -169.75 -102.33 REMARK 500 ALA B 168 -84.98 -106.33 REMARK 500 ALA B 173 -127.56 64.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 4XZS A 1 366 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 4XZS A 371 445 UNP O43715 TRIA1_HUMAN 2 76 DBREF 4XZS B 1 366 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 4XZS B 371 445 UNP O43715 TRIA1_HUMAN 2 76 SEQADV 4XZS MET A 0 UNP P0AEX9 INITIATING METHIONINE SEQADV 4XZS ALA A 82 UNP P0AEX9 ASP 108 CONFLICT SEQADV 4XZS ALA A 83 UNP P0AEX9 LYS 109 CONFLICT SEQADV 4XZS ALA A 172 UNP P0AEX9 GLU 198 CONFLICT SEQADV 4XZS ALA A 173 UNP P0AEX9 ASN 199 CONFLICT SEQADV 4XZS ALA A 239 UNP P0AEX9 LYS 265 CONFLICT SEQADV 4XZS ALA A 359 UNP P0AEX9 GLU 385 CONFLICT SEQADV 4XZS ALA A 362 UNP P0AEX9 LYS 388 CONFLICT SEQADV 4XZS ALA A 363 UNP P0AEX9 ASP 389 CONFLICT SEQADV 4XZS ASN A 367 UNP P0AEX9 LINKER SEQADV 4XZS ALA A 368 UNP P0AEX9 LINKER SEQADV 4XZS ALA A 369 UNP P0AEX9 LINKER SEQADV 4XZS ALA A 370 UNP P0AEX9 LINKER SEQADV 4XZS MET B 0 UNP P0AEX9 INITIATING METHIONINE SEQADV 4XZS ALA B 82 UNP P0AEX9 ASP 108 CONFLICT SEQADV 4XZS ALA B 83 UNP P0AEX9 LYS 109 CONFLICT SEQADV 4XZS ALA B 172 UNP P0AEX9 GLU 198 CONFLICT SEQADV 4XZS ALA B 173 UNP P0AEX9 ASN 199 CONFLICT SEQADV 4XZS ALA B 239 UNP P0AEX9 LYS 265 CONFLICT SEQADV 4XZS ALA B 359 UNP P0AEX9 GLU 385 CONFLICT SEQADV 4XZS ALA B 362 UNP P0AEX9 LYS 388 CONFLICT SEQADV 4XZS ALA B 363 UNP P0AEX9 ASP 389 CONFLICT SEQADV 4XZS ASN B 367 UNP P0AEX9 LINKER SEQADV 4XZS ALA B 368 UNP P0AEX9 LINKER SEQADV 4XZS ALA B 369 UNP P0AEX9 LINKER SEQADV 4XZS ALA B 370 UNP P0AEX9 LINKER SEQRES 1 A 446 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 446 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 446 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 446 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 446 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 446 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 446 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 446 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 446 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 446 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 446 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 446 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 446 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 446 PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 446 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 446 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 446 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 446 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 446 ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 446 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 446 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 446 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 446 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 446 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 446 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 446 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 446 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 446 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 A 446 ALA GLN THR ASN ALA ALA ALA ASN SER VAL GLY GLU ALA SEQRES 30 A 446 CYS THR ASP MET LYS ARG GLU TYR ASP GLN CYS PHE ASN SEQRES 31 A 446 ARG TRP PHE ALA GLU LYS PHE LEU LYS GLY ASP SER SER SEQRES 32 A 446 GLY ASP PRO CYS THR ASP LEU PHE LYS ARG TYR GLN GLN SEQRES 33 A 446 CYS VAL GLN LYS ALA ILE LYS GLU LYS GLU ILE PRO ILE SEQRES 34 A 446 GLU GLY LEU GLU PHE MET GLY HIS GLY LYS GLU LYS PRO SEQRES 35 A 446 GLU ASN SER SER SEQRES 1 B 446 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 B 446 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 B 446 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 B 446 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 B 446 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 B 446 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 B 446 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 B 446 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 B 446 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 B 446 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 B 446 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 B 446 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 B 446 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 B 446 PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 B 446 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 B 446 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 B 446 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 B 446 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 B 446 ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL SEQRES 20 B 446 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 B 446 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 B 446 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 B 446 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 B 446 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 B 446 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 B 446 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 B 446 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 B 446 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 B 446 ALA GLN THR ASN ALA ALA ALA ASN SER VAL GLY GLU ALA SEQRES 30 B 446 CYS THR ASP MET LYS ARG GLU TYR ASP GLN CYS PHE ASN SEQRES 31 B 446 ARG TRP PHE ALA GLU LYS PHE LEU LYS GLY ASP SER SER SEQRES 32 B 446 GLY ASP PRO CYS THR ASP LEU PHE LYS ARG TYR GLN GLN SEQRES 33 B 446 CYS VAL GLN LYS ALA ILE LYS GLU LYS GLU ILE PRO ILE SEQRES 34 B 446 GLU GLY LEU GLU PHE MET GLY HIS GLY LYS GLU LYS PRO SEQRES 35 B 446 GLU ASN SER SER HET GLC C 1 12 HET GLC C 2 11 HET GLC D 1 12 HET GLC D 2 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 4(C6 H12 O6) FORMUL 5 HOH *266(H2 O) HELIX 1 AA1 GLY A 16 GLY A 32 1 17 HELIX 2 AA2 LYS A 42 ALA A 52 1 11 HELIX 3 AA3 ARG A 66 SER A 73 1 8 HELIX 4 AA4 ALA A 82 ASP A 87 1 6 HELIX 5 AA5 TYR A 90 VAL A 97 1 8 HELIX 6 AA6 THR A 128 GLU A 130 5 3 HELIX 7 AA7 GLU A 131 LYS A 142 1 12 HELIX 8 AA8 GLU A 153 ASP A 164 1 12 HELIX 9 AA9 ASN A 185 ASN A 201 1 17 HELIX 10 AB1 ASP A 209 LYS A 219 1 11 HELIX 11 AB2 GLY A 228 TRP A 230 5 3 HELIX 12 AB3 ALA A 231 SER A 238 1 8 HELIX 13 AB4 ASN A 272 TYR A 283 1 12 HELIX 14 AB5 THR A 286 LYS A 297 1 12 HELIX 15 AB6 LEU A 304 ALA A 312 1 9 HELIX 16 AB7 ASP A 314 GLY A 327 1 14 HELIX 17 AB8 GLN A 335 SER A 352 1 18 HELIX 18 AB9 THR A 356 LYS A 395 1 40 HELIX 19 AC1 PHE A 396 GLY A 399 5 4 HELIX 20 AC2 CYS A 406 ILE A 421 1 16 HELIX 21 AC3 GLY B 16 GLY B 32 1 17 HELIX 22 AC4 LYS B 42 ALA B 52 1 11 HELIX 23 AC5 ARG B 66 SER B 73 1 8 HELIX 24 AC6 ALA B 82 ASP B 87 1 6 HELIX 25 AC7 TYR B 90 VAL B 97 1 8 HELIX 26 AC8 THR B 128 GLU B 130 5 3 HELIX 27 AC9 GLU B 131 LYS B 142 1 12 HELIX 28 AD1 GLU B 153 ASP B 164 1 12 HELIX 29 AD2 ASN B 185 ASN B 201 1 17 HELIX 30 AD3 ASP B 209 LYS B 219 1 11 HELIX 31 AD4 GLY B 228 TRP B 230 5 3 HELIX 32 AD5 ALA B 231 SER B 238 1 8 HELIX 33 AD6 ASN B 272 TYR B 283 1 12 HELIX 34 AD7 THR B 286 LYS B 297 1 12 HELIX 35 AD8 LEU B 304 ALA B 312 1 9 HELIX 36 AD9 ASP B 314 GLY B 327 1 14 HELIX 37 AE1 GLN B 335 SER B 352 1 18 HELIX 38 AE2 THR B 356 LYS B 395 1 40 HELIX 39 AE3 PHE B 396 GLY B 399 5 4 HELIX 40 AE4 CYS B 406 ALA B 420 1 15 SHEET 1 AA1 6 VAL A 35 GLU A 38 0 SHEET 2 AA1 6 LEU A 7 TRP A 10 1 N ILE A 9 O GLU A 38 SHEET 3 AA1 6 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 AA1 6 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 AA1 6 TYR A 106 GLU A 111 -1 N ILE A 108 O LEU A 262 SHEET 6 AA1 6 ALA A 301 VAL A 302 -1 O ALA A 301 N VAL A 110 SHEET 1 AA2 5 VAL A 35 GLU A 38 0 SHEET 2 AA2 5 LEU A 7 TRP A 10 1 N ILE A 9 O GLU A 38 SHEET 3 AA2 5 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 AA2 5 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 AA2 5 GLU A 328 ILE A 329 1 O GLU A 328 N VAL A 259 SHEET 1 AA3 2 ARG A 98 TYR A 99 0 SHEET 2 AA3 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 AA4 4 SER A 145 LEU A 147 0 SHEET 2 AA4 4 THR A 222 ASN A 227 1 O ALA A 223 N SER A 145 SHEET 3 AA4 4 SER A 114 ASN A 118 -1 N ASN A 118 O ALA A 223 SHEET 4 AA4 4 TYR A 242 THR A 245 -1 O THR A 245 N LEU A 115 SHEET 1 AA5 2 PHE A 169 ALA A 172 0 SHEET 2 AA5 2 LYS A 175 VAL A 181 -1 O LYS A 175 N ALA A 172 SHEET 1 AA6 6 LYS B 34 GLU B 38 0 SHEET 2 AA6 6 LYS B 6 TRP B 10 1 N ILE B 9 O GLU B 38 SHEET 3 AA6 6 ILE B 59 ALA B 63 1 O PHE B 61 N TRP B 10 SHEET 4 AA6 6 PHE B 258 ILE B 266 -1 O GLY B 265 N ILE B 60 SHEET 5 AA6 6 TYR B 106 GLU B 111 -1 N ILE B 108 O LEU B 262 SHEET 6 AA6 6 ALA B 301 VAL B 302 -1 O ALA B 301 N VAL B 110 SHEET 1 AA7 5 LYS B 34 GLU B 38 0 SHEET 2 AA7 5 LYS B 6 TRP B 10 1 N ILE B 9 O GLU B 38 SHEET 3 AA7 5 ILE B 59 ALA B 63 1 O PHE B 61 N TRP B 10 SHEET 4 AA7 5 PHE B 258 ILE B 266 -1 O GLY B 265 N ILE B 60 SHEET 5 AA7 5 GLU B 328 ILE B 329 1 O GLU B 328 N VAL B 259 SHEET 1 AA8 2 ARG B 98 TYR B 99 0 SHEET 2 AA8 2 LYS B 102 LEU B 103 -1 O LYS B 102 N TYR B 99 SHEET 1 AA9 4 SER B 145 LEU B 147 0 SHEET 2 AA9 4 THR B 222 ASN B 227 1 O ALA B 223 N SER B 145 SHEET 3 AA9 4 SER B 114 ASN B 118 -1 N ASN B 118 O ALA B 223 SHEET 4 AA9 4 TYR B 242 THR B 245 -1 O THR B 245 N LEU B 115 SHEET 1 AB1 2 PHE B 169 ALA B 172 0 SHEET 2 AB1 2 LYS B 175 VAL B 181 -1 O ASP B 177 N LYS B 170 SHEET 1 AB2 2 THR B 249 PHE B 250 0 SHEET 2 AB2 2 GLN B 253 PRO B 254 -1 O GLN B 253 N PHE B 250 SSBOND 1 CYS A 377 CYS A 416 1555 1555 2.08 SSBOND 2 CYS B 377 CYS B 416 1555 1555 2.07 SSBOND 3 CYS B 387 CYS B 406 1555 1555 2.11 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.41 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.44 CRYST1 75.390 56.010 100.280 90.00 106.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013264 0.000000 0.003891 0.00000 SCALE2 0.000000 0.017854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010392 0.00000