HEADER HYDROLASE/HYDROLASE INHIBITOR COMPLEX 06-FEB-15 4Y0Z TITLE TRYPSIN IN COMPLEX WITH WITH BPTI MUTANT AMINOBUTYRIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATIONIC TRYPSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: BETA-TRYPSIN, TRYPSIN; COMPND 5 EC: 3.4.21.4; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PANCREATIC TRYPSIN INHIBITOR; COMPND 8 CHAIN: I; COMPND 9 FRAGMENT: UNP RESIDUES 36-93; COMPND 10 SYNONYM: APROTININ,BASIC PROTEASE INHIBITOR,BPTI; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: NON-CANONICAL AMINO ACID WAS INCOPORATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: CATTLE; SOURCE 9 ORGANISM_TAXID: 9913; SOURCE 10 OTHER_DETAILS: SYNTHESIZED KEYWDS HYDROLASE INHIBITORS, METAL-BINDING, SERINE PROTEASE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX, HYDROLASE-HYDROLASE INHIBITOR COMPLEX KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.LOLL,S.YE,A.A.BERGER,U.MUELOW,C.ALINGS,M.C.WAHL,B.KOKSCH REVDAT 3 18-APR-18 4Y0Z 1 JRNL REMARK LINK SITE REVDAT 3 2 1 ATOM REVDAT 2 26-AUG-15 4Y0Z 1 JRNL REVDAT 1 24-JUN-15 4Y0Z 0 JRNL AUTH S.YE,B.LOLL,A.A.BERGER,U.MULOW,C.ALINGS,M.C.WAHL,B.KOKSCH JRNL TITL FLUORINE TEAMS UP WITH WATER TO RESTORE INHIBITOR ACTIVITY JRNL TITL 2 TO MUTANT BPTI. JRNL REF CHEM SCI V. 6 5246 2015 JRNL REFN ISSN 2041-6520 JRNL PMID 29449928 JRNL DOI 10.1039/C4SC03227F REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 79296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2409 - 4.1498 0.97 2834 149 0.1584 0.1580 REMARK 3 2 4.1498 - 3.2947 1.00 2798 147 0.1178 0.1445 REMARK 3 3 3.2947 - 2.8785 1.00 2778 146 0.1351 0.1599 REMARK 3 4 2.8785 - 2.6154 1.00 2773 146 0.1371 0.1628 REMARK 3 5 2.6154 - 2.4280 1.00 2731 144 0.1277 0.1420 REMARK 3 6 2.4280 - 2.2849 1.00 2736 144 0.1212 0.1453 REMARK 3 7 2.2849 - 2.1705 0.99 2724 143 0.1140 0.1311 REMARK 3 8 2.1705 - 2.0760 1.00 2707 143 0.1133 0.1294 REMARK 3 9 2.0760 - 1.9961 0.99 2754 145 0.1122 0.1267 REMARK 3 10 1.9961 - 1.9272 0.99 2690 141 0.1133 0.1420 REMARK 3 11 1.9272 - 1.8670 0.99 2704 143 0.1139 0.1442 REMARK 3 12 1.8670 - 1.8136 0.99 2710 142 0.1155 0.1443 REMARK 3 13 1.8136 - 1.7658 0.99 2665 140 0.1186 0.1655 REMARK 3 14 1.7658 - 1.7228 0.99 2704 143 0.1212 0.1464 REMARK 3 15 1.7228 - 1.6836 0.99 2687 141 0.1164 0.1492 REMARK 3 16 1.6836 - 1.6478 0.99 2690 142 0.1176 0.1527 REMARK 3 17 1.6478 - 1.6148 0.99 2689 141 0.1231 0.1700 REMARK 3 18 1.6148 - 1.5843 0.99 2655 140 0.1330 0.1668 REMARK 3 19 1.5843 - 1.5560 0.99 2702 142 0.1399 0.1560 REMARK 3 20 1.5560 - 1.5297 0.99 2662 140 0.1566 0.2060 REMARK 3 21 1.5297 - 1.5050 0.98 2639 139 0.1652 0.2000 REMARK 3 22 1.5050 - 1.4818 0.98 2659 140 0.1693 0.2133 REMARK 3 23 1.4818 - 1.4600 0.98 2656 140 0.1755 0.2078 REMARK 3 24 1.4600 - 1.4395 0.98 2683 141 0.1848 0.2013 REMARK 3 25 1.4395 - 1.4200 0.98 2658 140 0.2039 0.2464 REMARK 3 26 1.4200 - 1.4016 0.98 2600 137 0.2265 0.2671 REMARK 3 27 1.4016 - 1.3841 0.98 2656 140 0.2367 0.2704 REMARK 3 28 1.3841 - 1.3674 0.88 2388 125 0.2666 0.3002 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2371 REMARK 3 ANGLE : 1.423 3240 REMARK 3 CHIRALITY : 0.087 353 REMARK 3 PLANARITY : 0.009 414 REMARK 3 DIHEDRAL : 11.289 882 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 TO 2.2 M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.45350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.14950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.67600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.45350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.14950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.67600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.45350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.14950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.67600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.45350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.14950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.67600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG I 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH I 237 O HOH I 262 1.90 REMARK 500 O HOH E 587 O HOH E 630 2.05 REMARK 500 SD MET I 52 O HOH I 253 2.14 REMARK 500 O HOH E 587 O HOH E 618 2.18 REMARK 500 O HOH I 234 O HOH I 239 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH TYR I 21 HH TYR I 21 4559 1.27 REMARK 500 O HOH E 516 O HOH E 619 8559 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL E 75 C VAL E 75 O -0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL E 75 CA - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 71 -75.59 -122.97 REMARK 500 SER E 216 -71.85 -125.14 REMARK 500 ASN I 44 109.95 -160.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL E 75 -15.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 70 OE2 REMARK 620 2 ASN E 72 O 89.5 REMARK 620 3 VAL E 75 O 171.0 83.8 REMARK 620 4 GLU E 80 OE2 101.0 163.3 87.0 REMARK 620 5 HOH E 460 O 78.8 102.7 96.9 92.2 REMARK 620 6 HOH E 409 O 82.1 89.3 103.6 79.3 157.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 I 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 I 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 I 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y0Y RELATED DB: PDB REMARK 900 RELATED ID: 4Y10 RELATED DB: PDB REMARK 900 RELATED ID: 4Y11 RELATED DB: PDB DBREF 4Y0Z E 16 247 UNP P00760 TRY1_BOVIN 24 246 DBREF 4Y0Z I 1 58 UNP P00974 BPT1_BOVIN 36 93 SEQADV 4Y0Z ABA I 15 UNP P00974 LYS 50 ENGINEERED MUTATION SEQRES 1 E 223 ILE VAL GLY GLY TYR THR CYS GLY ALA ASN THR VAL PRO SEQRES 2 E 223 TYR GLN VAL SER LEU ASN SER GLY TYR HIS PHE CYS GLY SEQRES 3 E 223 GLY SER LEU ILE ASN SER GLN TRP VAL VAL SER ALA ALA SEQRES 4 E 223 HIS CYS TYR LYS SER GLY ILE GLN VAL ARG LEU GLY GLU SEQRES 5 E 223 ASP ASN ILE ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SEQRES 6 E 223 SER ALA SER LYS SER ILE VAL HIS PRO SER TYR ASN SER SEQRES 7 E 223 ASN THR LEU ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SEQRES 8 E 223 SER ALA ALA SER LEU ASN SER ARG VAL ALA SER ILE SER SEQRES 9 E 223 LEU PRO THR SER CYS ALA SER ALA GLY THR GLN CYS LEU SEQRES 10 E 223 ILE SER GLY TRP GLY ASN THR LYS SER SER GLY THR SER SEQRES 11 E 223 TYR PRO ASP VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SEQRES 12 E 223 SER ASP SER SER CYS LYS SER ALA TYR PRO GLY GLN ILE SEQRES 13 E 223 THR SER ASN MET PHE CYS ALA GLY TYR LEU GLU GLY GLY SEQRES 14 E 223 LYS ASP SER CYS GLN GLY ASP SER GLY GLY PRO VAL VAL SEQRES 15 E 223 CYS SER GLY LYS LEU GLN GLY ILE VAL SER TRP GLY SER SEQRES 16 E 223 GLY CYS ALA GLN LYS ASN LYS PRO GLY VAL TYR THR LYS SEQRES 17 E 223 VAL CYS ASN TYR VAL SER TRP ILE LYS GLN THR ILE ALA SEQRES 18 E 223 SER ASN SEQRES 1 I 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 I 58 CYS ABA ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 I 58 ALA GLY LEU CYS GLN THR PHE VAL TYR GLY GLY CYS ARG SEQRES 4 I 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP CYS MET SEQRES 5 I 58 ARG THR CYS GLY GLY ALA HET ABA I 15 13 HET SO4 E 301 5 HET SO4 E 302 5 HET SO4 E 303 5 HET SO4 E 304 5 HET SO4 E 305 5 HET SO4 E 306 5 HET SO4 E 307 5 HET CA E 308 1 HET GOL E 309 14 HET GOL E 310 14 HET SO4 I 101 5 HET SO4 I 102 5 HET SO4 I 103 5 HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ABA C4 H9 N O2 FORMUL 3 SO4 10(O4 S 2-) FORMUL 10 CA CA 2+ FORMUL 11 GOL 2(C3 H8 O3) FORMUL 16 HOH *368(H2 O) HELIX 1 AA1 ALA E 55 TYR E 59 5 5 HELIX 2 AA2 SER E 164 TYR E 172 1 9 HELIX 3 AA3 TYR E 236 SER E 246 1 11 HELIX 4 AA4 ASP I 3 GLU I 7 5 5 HELIX 5 AA5 SER I 47 GLY I 56 1 10 SHEET 1 AA1 7 TYR E 20 THR E 21 0 SHEET 2 AA1 7 LYS E 156 PRO E 161 -1 O CYS E 157 N TYR E 20 SHEET 3 AA1 7 GLN E 135 GLY E 140 -1 N ILE E 138 O LEU E 158 SHEET 4 AA1 7 PRO E 200 CYS E 203 -1 O VAL E 202 N LEU E 137 SHEET 5 AA1 7 LYS E 206 TRP E 217 -1 O LYS E 206 N CYS E 203 SHEET 6 AA1 7 GLY E 228 LYS E 232 -1 O VAL E 229 N TRP E 217 SHEET 7 AA1 7 MET E 180 ALA E 183 -1 N PHE E 181 O TYR E 230 SHEET 1 AA2 7 GLN E 30 ASN E 34 0 SHEET 2 AA2 7 HIS E 40 ASN E 48 -1 O CYS E 42 N LEU E 33 SHEET 3 AA2 7 TRP E 51 SER E 54 -1 O VAL E 53 N SER E 45 SHEET 4 AA2 7 MET E 104 LEU E 108 -1 O ILE E 106 N VAL E 52 SHEET 5 AA2 7 GLN E 81 VAL E 90 -1 N ILE E 89 O LEU E 105 SHEET 6 AA2 7 GLN E 64 LEU E 67 -1 N LEU E 67 O GLN E 81 SHEET 7 AA2 7 GLN E 30 ASN E 34 -1 N SER E 32 O ARG E 66 SHEET 1 AA3 2 ILE I 18 ASN I 24 0 SHEET 2 AA3 2 LEU I 29 TYR I 35 -1 O TYR I 35 N ILE I 18 SSBOND 1 CYS E 22 CYS E 157 1555 1555 2.09 SSBOND 2 CYS E 42 CYS E 58 1555 1555 2.05 SSBOND 3 CYS E 128 CYS E 234 1555 1555 2.02 SSBOND 4 CYS E 136 CYS E 203 1555 1555 2.03 SSBOND 5 CYS E 168 CYS E 182 1555 1555 2.06 SSBOND 6 CYS E 193 CYS E 221 1555 1555 2.10 SSBOND 7 CYS I 5 CYS I 55 1555 1555 2.06 SSBOND 8 CYS I 14 CYS I 38 1555 1555 2.10 SSBOND 9 CYS I 30 CYS I 51 1555 1555 2.17 LINK OE2 GLU E 70 CA CA E 308 1555 1555 2.34 LINK O ASN E 72 CA CA E 308 1555 1555 2.35 LINK O VAL E 75 CA CA E 308 1555 1555 2.23 LINK OE2 GLU E 80 CA CA E 308 1555 1555 2.36 LINK C CYS I 14 N ABA I 15 1555 1555 1.34 LINK C ABA I 15 N ALA I 16 1555 1555 1.33 LINK CA CA E 308 O HOH E 460 1555 1555 2.39 LINK CA CA E 308 O HOH E 409 1555 1555 2.41 SITE 1 AC1 10 TYR E 59 LYS E 60 SER E 61 HOH E 418 SITE 2 AC1 10 HOH E 438 HOH E 456 HOH E 547 HOH E 555 SITE 3 AC1 10 HOH E 411 LYS I 46 SITE 1 AC2 6 LYS E 87 LYS E 107 ASN E 247 HOH E 402 SITE 2 AC2 6 HOH E 408 HOH E 492 SITE 1 AC3 5 PRO E 152 ASP E 153 VAL E 154 LYS E 156 SITE 2 AC3 5 HOH E 486 SITE 1 AC4 5 ASN E 95 THR E 98 ASN E 100 ASN E 101 SITE 2 AC4 5 HOH E 436 SITE 1 AC5 5 PRO E 173 GLY E 174 HOH E 480 HOH E 426 SITE 2 AC5 5 HOH E 423 SITE 1 AC6 5 ASN E 100 ASN E 179 SO4 E 307 HOH E 401 SITE 2 AC6 5 HOH E 407 SITE 1 AC7 4 THR E 177 SER E 178 SO4 E 306 HOH E 481 SITE 1 AC8 6 GLU E 70 ASN E 72 VAL E 75 GLU E 80 SITE 2 AC8 6 HOH E 409 HOH E 460 SITE 1 AC9 3 TYR E 20 CYS E 22 THR E 26 SITE 1 AD1 5 ASN E 48 LYS E 241 ILE E 244 HOH E 415 SITE 2 AD1 5 HOH E 532 SITE 1 AD2 7 ARG I 42 HOH I 242 HOH I 259 HOH I 217 SITE 2 AD2 7 HOH I 204 HOH I 247 HOH I 226 SITE 1 AD3 7 ARG I 20 TYR I 35 HOH I 210 HOH I 243 SITE 2 AD3 7 HOH I 249 HOH I 216 HOH I 267 SITE 1 AD4 7 PRO I 9 TYR I 10 THR I 11 GLY I 12 SITE 2 AD4 7 HOH I 224 HOH I 269 HOH I 257 CRYST1 74.907 82.299 123.352 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008107 0.00000