HEADER TRANSFERASE 11-FEB-15 4Y5Q TITLE ACTIVATED CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM CRYPTOSPORIDIUM TITLE 2 PARVUM (CPCDPK1) IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 70-538; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM PARVUM IOWA II; SOURCE 3 ORGANISM_TAXID: 353152; SOURCE 4 GENE: CGD3_920; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15MHL KEYWDS SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, CALCIUM-BINDING, ATP- KEYWDS 2 BINDING, CALMODULIN, BUMPED KINASE INHIBITOR, STRUCTURAL GENOMICS, KEYWDS 3 MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA, MSGPP EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MERRITT,E.T.LARSON,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 4 28-FEB-24 4Y5Q 1 REMARK REVDAT 3 11-DEC-19 4Y5Q 1 REMARK REVDAT 2 20-SEP-17 4Y5Q 1 SOURCE REMARK REVDAT 1 25-FEB-15 4Y5Q 0 JRNL AUTH E.A.MERRITT,E.T.LARSON, JRNL AUTH 2 MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA JRNL TITL ACTIVATED CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM JRNL TITL 2 CRYPTOSPORIDIUM PARVUM (CPCDPK1) IN COMPLEX WITH AMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.T.LARSON,K.K.OJO,R.C.MURPHY,S.M.JOHNSON,Z.ZHANG,J.E.KIM, REMARK 1 AUTH 2 D.J.LEIBLY,A.M.FOX,M.C.REID,E.J.DALE,B.G.PERERA,J.KIM, REMARK 1 AUTH 3 S.N.HEWITT,W.G.HOL,C.L.VERLINDE,E.FAN,W.C.VAN VOORHIS, REMARK 1 AUTH 4 D.J.MALY,E.A.MERRITT REMARK 1 TITL MULTIPLE DETERMINANTS FOR SELECTIVE INHIBITION OF REMARK 1 TITL 2 APICOMPLEXAN CALCIUM-DEPENDENT PROTEIN KINASE CDPK1. REMARK 1 REF J. MED. CHEM. V. 55 2803 2012 REMARK 1 REFN ISSN 1520-4804 REMARK 1 PMID 22369268 REMARK 1 DOI 10.1021/JM201725V REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 32894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : -2.56000 REMARK 3 B33 (A**2) : 2.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3732 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3531 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4995 ; 1.806 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8146 ; 0.882 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 6.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;34.226 ;24.514 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;16.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4118 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 831 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1804 ; 3.207 ; 3.962 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1803 ; 3.194 ; 3.959 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2244 ; 4.542 ; 5.912 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2490 17.9230 7.7300 REMARK 3 T TENSOR REMARK 3 T11: 0.0412 T22: 0.1056 REMARK 3 T33: 0.0518 T12: -0.0303 REMARK 3 T13: 0.0326 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.1681 L22: 1.3669 REMARK 3 L33: 1.4204 L12: 1.0488 REMARK 3 L13: 0.0856 L23: -0.6651 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: 0.1100 S13: 0.1386 REMARK 3 S21: 0.0434 S22: -0.0223 S23: -0.0477 REMARK 3 S31: -0.1570 S32: 0.1539 S33: -0.0028 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5490 5.2260 9.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0904 REMARK 3 T33: 0.0381 T12: -0.0252 REMARK 3 T13: 0.0291 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 3.2882 L22: 2.1033 REMARK 3 L33: 1.6557 L12: 0.2297 REMARK 3 L13: 0.3359 L23: 0.2118 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.0202 S13: -0.0846 REMARK 3 S21: -0.0177 S22: -0.0966 S23: 0.1443 REMARK 3 S31: 0.0838 S32: -0.2001 S33: 0.0774 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 339 A 466 REMARK 3 RESIDUE RANGE : A 601 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8600 2.8880 33.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.2518 REMARK 3 T33: 0.1218 T12: -0.0024 REMARK 3 T13: 0.0419 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 2.6776 L22: 2.8337 REMARK 3 L33: 3.2097 L12: 0.0344 REMARK 3 L13: -0.2178 L23: -1.8842 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: -0.1977 S13: -0.0635 REMARK 3 S21: 0.2249 S22: -0.3519 S23: -0.5058 REMARK 3 S31: 0.1860 S32: 0.5944 S33: 0.3710 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 467 A 536 REMARK 3 RESIDUE RANGE : A 603 A 604 REMARK 3 ORIGIN FOR THE GROUP (A): 49.4570 17.5020 25.6810 REMARK 3 T TENSOR REMARK 3 T11: 0.3129 T22: 0.5970 REMARK 3 T33: 0.3837 T12: -0.0722 REMARK 3 T13: -0.0243 T23: -0.1422 REMARK 3 L TENSOR REMARK 3 L11: 5.2839 L22: 7.0834 REMARK 3 L33: 10.3886 L12: 2.5937 REMARK 3 L13: 1.3813 L23: 0.1526 REMARK 3 S TENSOR REMARK 3 S11: 0.1664 S12: -1.2023 S13: 0.6127 REMARK 3 S21: 0.9501 S22: -0.2101 S23: -0.2787 REMARK 3 S31: -0.9646 S32: 0.4834 S33: 0.0437 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4Y5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34688 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.994 REMARK 200 RESOLUTION RANGE LOW (A) : 40.272 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : 0.65100 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0073 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 3350, 0.27 M AMMONIUM TARTRATE REMARK 280 (PH 7.0), 6% PEG 400, 5 MM TCEP, 4 MM MGCL2, 2 MM CACL2, 2 MM REMARK 280 AMP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.94500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 ARG A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LYS A 231 REMARK 465 MET A 232 REMARK 465 LYS A 233 REMARK 465 LEU A 423 REMARK 465 ILE A 424 REMARK 465 GLN A 425 REMARK 465 ASN A 426 REMARK 465 GLU A 427 REMARK 465 GLN A 497 REMARK 465 ALA A 498 REMARK 465 ASP A 499 REMARK 465 SER A 500 REMARK 465 SER A 501 REMARK 465 ILE A 502 REMARK 465 GLN A 503 REMARK 465 MET A 504 REMARK 465 GLU A 505 REMARK 465 GLU A 506 REMARK 465 LEU A 507 REMARK 465 GLU A 508 REMARK 465 SER A 509 REMARK 465 ILE A 510 REMARK 465 ILE A 511 REMARK 465 GLU A 538 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 230 OG1 CG2 REMARK 470 ARG A 235 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 LYS A 493 CG CD CE NZ REMARK 470 GLU A 512 CG CD OE1 OE2 REMARK 470 GLN A 513 CG CD OE1 NE2 REMARK 470 LYS A 518 CG CD CE NZ REMARK 470 ASN A 537 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 252 O HOH A 800 2.09 REMARK 500 OG SER A 337 O HOH A 766 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 169 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLU A 454 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 168 -52.18 73.88 REMARK 500 ARG A 197 -22.83 96.16 REMARK 500 ASP A 198 47.60 -147.66 REMARK 500 ASP A 219 63.18 68.10 REMARK 500 PHE A 293 55.44 -97.99 REMARK 500 LEU A 313 35.48 -97.84 REMARK 500 SER A 336 40.48 -141.84 REMARK 500 SER A 429 117.57 -161.69 REMARK 500 ASP A 479 76.92 -68.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 393 OD1 REMARK 620 2 ASN A 395 OD1 81.9 REMARK 620 3 ASP A 397 OD1 89.1 76.5 REMARK 620 4 MET A 399 O 91.3 156.3 80.7 REMARK 620 5 GLU A 404 OE1 106.9 126.5 152.8 77.2 REMARK 620 6 GLU A 404 OE2 88.5 74.8 151.3 128.0 53.5 REMARK 620 7 HOH A 796 O 167.6 85.9 86.1 99.2 82.0 90.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD1 REMARK 620 2 ASP A 445 OD1 77.4 REMARK 620 3 SER A 447 OG 85.9 87.6 REMARK 620 4 SER A 449 O 85.3 155.5 73.8 REMARK 620 5 GLU A 451 OE1 162.5 100.2 76.7 91.1 REMARK 620 6 GLU A 454 OE1 115.0 119.1 148.2 83.8 81.6 REMARK 620 7 GLU A 454 OE2 98.4 67.6 153.0 133.0 96.6 52.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 479 OD2 REMARK 620 2 ASP A 481 OD1 88.9 REMARK 620 3 SER A 483 OG 88.7 87.5 REMARK 620 4 LYS A 485 O 77.9 154.7 70.9 REMARK 620 5 GLU A 490 OE1 87.5 120.1 151.9 81.1 REMARK 620 6 GLU A 490 OE2 104.0 69.2 152.9 134.7 54.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 515 OD1 REMARK 620 2 ASN A 517 OD1 63.1 REMARK 620 3 ASP A 519 OD1 98.7 72.8 REMARK 620 4 GLU A 521 O 108.6 145.8 76.2 REMARK 620 5 GLU A 526 OE1 72.5 81.3 153.8 129.9 REMARK 620 6 GLU A 526 OE2 78.8 129.1 149.5 75.9 54.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NCG RELATED DB: PDB REMARK 900 CPCDPK1 WITH INHIBITOR NM-PP1 REMARK 900 RELATED ID: 3MWU RELATED DB: PDB REMARK 900 CPCDPK1 WITH INHIBITOR RM-1-95 REMARK 900 RELATED ID: 3IGO RELATED DB: PDB REMARK 900 CPCDPK1 WITH ATP ANALOG ANP DBREF 4Y5Q A 70 538 UNP A3FQ16 A3FQ16_CRYPI 70 538 SEQADV 4Y5Q MET A -16 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q HIS A -15 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q HIS A -14 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q HIS A -13 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q HIS A -12 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q HIS A -11 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q HIS A -10 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q SER A -9 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q SER A -8 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q GLY A -7 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q ARG A -6 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q GLU A -5 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q ASN A -4 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q LEU A -3 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q TYR A -2 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q PHE A -1 UNP A3FQ16 EXPRESSION TAG SEQADV 4Y5Q GLN A 0 UNP A3FQ16 EXPRESSION TAG SEQRES 1 A 486 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 486 LEU TYR PHE GLN GLY THR PHE ALA GLU ARG TYR ASN ILE SEQRES 3 A 486 VAL CYS MET LEU GLY LYS GLY SER PHE GLY GLU VAL LEU SEQRES 4 A 486 LYS CYS LYS ASP ARG ILE THR GLN GLN GLU TYR ALA VAL SEQRES 5 A 486 LYS VAL ILE ASN LYS ALA SER ALA LYS ASN LYS ASP THR SEQRES 6 A 486 SER THR ILE LEU ARG GLU VAL GLU LEU LEU LYS LYS LEU SEQRES 7 A 486 ASP HIS PRO ASN ILE MET LYS LEU PHE GLU ILE LEU GLU SEQRES 8 A 486 ASP SER SER SER PHE TYR ILE VAL GLY GLU LEU TYR THR SEQRES 9 A 486 GLY GLY GLU LEU PHE ASP GLU ILE ILE LYS ARG LYS ARG SEQRES 10 A 486 PHE SER GLU HIS ASP ALA ALA ARG ILE ILE LYS GLN VAL SEQRES 11 A 486 PHE SER GLY ILE THR TYR MET HIS LYS HIS ASN ILE VAL SEQRES 12 A 486 HIS ARG ASP LEU LYS PRO GLU ASN ILE LEU LEU GLU SER SEQRES 13 A 486 LYS GLU LYS ASP CYS ASP ILE LYS ILE ILE ASP PHE GLY SEQRES 14 A 486 LEU SER THR CYS PHE GLN GLN ASN THR LYS MET LYS ASP SEQRES 15 A 486 ARG ILE GLY THR ALA TYR TYR ILE ALA PRO GLU VAL LEU SEQRES 16 A 486 ARG GLY THR TYR ASP GLU LYS CYS ASP VAL TRP SER ALA SEQRES 17 A 486 GLY VAL ILE LEU TYR ILE LEU LEU SER GLY THR PRO PRO SEQRES 18 A 486 PHE TYR GLY LYS ASN GLU TYR ASP ILE LEU LYS ARG VAL SEQRES 19 A 486 GLU THR GLY LYS TYR ALA PHE ASP LEU PRO GLN TRP ARG SEQRES 20 A 486 THR ILE SER ASP ASP ALA LYS ASP LEU ILE ARG LYS MET SEQRES 21 A 486 LEU THR PHE HIS PRO SER LEU ARG ILE THR ALA THR GLN SEQRES 22 A 486 CYS LEU GLU HIS PRO TRP ILE GLN LYS TYR SER SER GLU SEQRES 23 A 486 THR PRO THR ILE SER ASP LEU PRO SER LEU GLU SER ALA SEQRES 24 A 486 MET THR ASN ILE ARG GLN PHE GLN ALA GLU LYS LYS LEU SEQRES 25 A 486 ALA GLN ALA ALA LEU LEU TYR MET ALA SER LYS LEU THR SEQRES 26 A 486 THR LEU ASP GLU THR LYS GLN LEU THR GLU ILE PHE ARG SEQRES 27 A 486 LYS LEU ASP THR ASN ASN ASP GLY MET LEU ASP ARG ASP SEQRES 28 A 486 GLU LEU VAL ARG GLY TYR HIS GLU PHE MET ARG LEU LYS SEQRES 29 A 486 GLY VAL ASP SER ASN SER LEU ILE GLN ASN GLU GLY SER SEQRES 30 A 486 THR ILE GLU ASP GLN ILE ASP SER LEU MET PRO LEU LEU SEQRES 31 A 486 ASP MET ASP GLY SER GLY SER ILE GLU TYR SER GLU PHE SEQRES 32 A 486 ILE ALA SER ALA ILE ASP ARG THR ILE LEU LEU SER ARG SEQRES 33 A 486 GLU ARG MET GLU ARG ALA PHE LYS MET PHE ASP LYS ASP SEQRES 34 A 486 GLY SER GLY LYS ILE SER THR LYS GLU LEU PHE LYS LEU SEQRES 35 A 486 PHE SER GLN ALA ASP SER SER ILE GLN MET GLU GLU LEU SEQRES 36 A 486 GLU SER ILE ILE GLU GLN VAL ASP ASN ASN LYS ASP GLY SEQRES 37 A 486 GLU VAL ASP PHE ASN GLU PHE VAL GLU MET LEU GLN ASN SEQRES 38 A 486 PHE VAL ARG ASN GLU HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HET CA A 604 1 HET AMP A 605 23 HETNAM CA CALCIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 CA 4(CA 2+) FORMUL 6 AMP C10 H14 N5 O7 P FORMUL 7 HOH *115(H2 O) HELIX 1 AA1 GLY A 70 ARG A 75 1 6 HELIX 2 AA2 LYS A 109 LYS A 113 1 5 HELIX 3 AA3 ASP A 116 LYS A 129 1 14 HELIX 4 AA4 GLU A 159 LYS A 168 1 10 HELIX 5 AA5 SER A 171 HIS A 192 1 22 HELIX 6 AA6 LYS A 200 GLU A 202 5 3 HELIX 7 AA7 GLY A 237 ILE A 242 5 6 HELIX 8 AA8 ALA A 243 GLY A 249 5 7 HELIX 9 AA9 ASP A 252 GLY A 270 1 19 HELIX 10 AB1 ASN A 278 GLY A 289 1 12 HELIX 11 AB2 LEU A 295 ARG A 299 5 5 HELIX 12 AB3 SER A 302 LEU A 313 1 12 HELIX 13 AB4 THR A 322 GLU A 328 1 7 HELIX 14 AB5 HIS A 329 TYR A 335 1 7 HELIX 15 AB6 THR A 341 SER A 343 5 3 HELIX 16 AB7 ASP A 344 GLU A 361 1 18 HELIX 17 AB8 LYS A 362 THR A 377 1 16 HELIX 18 AB9 THR A 378 ASP A 393 1 16 HELIX 19 AC1 ASP A 401 GLY A 417 1 17 HELIX 20 AC2 THR A 430 ASP A 443 1 14 HELIX 21 AC3 GLU A 451 ILE A 460 1 10 HELIX 22 AC4 ASP A 461 LEU A 466 5 6 HELIX 23 AC5 SER A 467 ASP A 479 1 13 HELIX 24 AC6 SER A 487 SER A 496 1 10 HELIX 25 AC7 PHE A 524 ARG A 536 1 13 SHEET 1 AA1 5 TYR A 76 GLY A 83 0 SHEET 2 AA1 5 GLU A 89 ASP A 95 -1 O LYS A 92 N VAL A 79 SHEET 3 AA1 5 GLU A 101 ASN A 108 -1 O VAL A 104 N LEU A 91 SHEET 4 AA1 5 SER A 147 GLU A 153 -1 O GLY A 152 N ALA A 103 SHEET 5 AA1 5 LEU A 138 GLU A 143 -1 N LEU A 142 O TYR A 149 SHEET 1 AA2 2 ILE A 204 LEU A 206 0 SHEET 2 AA2 2 ILE A 215 ILE A 217 -1 O LYS A 216 N LEU A 205 SHEET 1 AA3 2 LYS A 485 ILE A 486 0 SHEET 2 AA3 2 VAL A 522 ASP A 523 -1 O VAL A 522 N ILE A 486 LINK OD1 ASP A 393 CA CA A 601 1555 1555 2.35 LINK OD1 ASN A 395 CA CA A 601 1555 1555 2.37 LINK OD1 ASP A 397 CA CA A 601 1555 1555 2.32 LINK O MET A 399 CA CA A 601 1555 1555 2.29 LINK OE1 GLU A 404 CA CA A 601 1555 1555 2.37 LINK OE2 GLU A 404 CA CA A 601 1555 1555 2.42 LINK OD1 ASP A 443 CA CA A 602 1555 1555 2.33 LINK OD1 ASP A 445 CA CA A 602 1555 1555 2.30 LINK OG SER A 447 CA CA A 602 1555 1555 2.36 LINK O SER A 449 CA CA A 602 1555 1555 2.32 LINK OE1 GLU A 451 CA CA A 602 1555 1555 2.35 LINK OE1 GLU A 454 CA CA A 602 1555 1555 2.34 LINK OE2 GLU A 454 CA CA A 602 1555 1555 2.43 LINK OD2 ASP A 479 CA CA A 603 1555 1555 2.30 LINK OD1 ASP A 481 CA CA A 603 1555 1555 2.33 LINK OG SER A 483 CA CA A 603 1555 1555 2.35 LINK O LYS A 485 CA CA A 603 1555 1555 2.33 LINK OE1 GLU A 490 CA CA A 603 1555 1555 2.36 LINK OE2 GLU A 490 CA CA A 603 1555 1555 2.35 LINK OD1 ASP A 515 CA CA A 604 1555 1555 2.35 LINK OD1 ASN A 517 CA CA A 604 1555 1555 2.32 LINK OD1 ASP A 519 CA CA A 604 1555 1555 2.34 LINK O GLU A 521 CA CA A 604 1555 1555 2.34 LINK OE1 GLU A 526 CA CA A 604 1555 1555 2.35 LINK OE2 GLU A 526 CA CA A 604 1555 1555 2.35 LINK CA CA A 601 O HOH A 796 1555 1555 2.14 SITE 1 AC1 6 ASP A 393 ASN A 395 ASP A 397 MET A 399 SITE 2 AC1 6 GLU A 404 HOH A 796 SITE 1 AC2 6 ASP A 443 ASP A 445 SER A 447 SER A 449 SITE 2 AC2 6 GLU A 451 GLU A 454 SITE 1 AC3 5 ASP A 479 ASP A 481 SER A 483 LYS A 485 SITE 2 AC3 5 GLU A 490 SITE 1 AC4 5 ASP A 515 ASN A 517 ASP A 519 GLU A 521 SITE 2 AC4 5 GLU A 526 SITE 1 AC5 14 GLY A 85 VAL A 90 ALA A 103 LYS A 105 SITE 2 AC5 14 GLU A 153 TYR A 155 LEU A 205 ASP A 219 SITE 3 AC5 14 HOH A 719 HOH A 729 HOH A 764 HOH A 775 SITE 4 AC5 14 HOH A 787 HOH A 797 CRYST1 60.070 55.890 81.450 90.00 104.79 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016647 0.000000 0.004395 0.00000 SCALE2 0.000000 0.017892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012698 0.00000