HEADER TRANSFERASE 16-FEB-15 4Y94 TITLE CRYSTAL STRUCTURE OF THE PH-TH MODULE OF BRUTON'S TYROSINE KINASE TITLE 2 BOUND TO INOSITOL HEXAKISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-SPECIFIC PROTEIN-TYROSINE KINASE; COMPND 3 CHAIN: B, C, A, D; COMPND 4 FRAGMENT: PH DOMAIN (UNP RESIDUES 1-170); COMPND 5 EC: 2.7.10.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: BTK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BTK, PH DOMAIN, TYROSINE KINASE, INOSITOL HEXAKISPHOSPHATE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.WANG,J.KURIYAN REVDAT 3 28-FEB-24 4Y94 1 REMARK REVDAT 2 14-OCT-20 4Y94 1 SOURCE REMARK HETSYN REVDAT 1 18-MAR-15 4Y94 0 JRNL AUTH Q.WANG,E.M.VOGAN,L.M.NOCKA,C.E.ROSEN,J.A.ZORN,S.C.HARRISON, JRNL AUTH 2 J.KURIYAN JRNL TITL AUTOINHIBITION OF BRUTON'S TYROSINE KINASE (BTK) AND JRNL TITL 2 ACTIVATION BY SOLUBLE INOSITOL HEXAKISPHOSPHATE. JRNL REF ELIFE V. 4 2015 JRNL REFN ESSN 2050-084X JRNL PMID 25699547 JRNL DOI 10.7554/ELIFE.06074 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 27927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.640 REMARK 3 FREE R VALUE TEST SET COUNT : 1855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4922 - 5.6401 0.99 2027 152 0.2200 0.2379 REMARK 3 2 5.6401 - 4.4779 0.99 2033 142 0.2112 0.2176 REMARK 3 3 4.4779 - 3.9122 0.99 2032 139 0.2062 0.2096 REMARK 3 4 3.9122 - 3.5547 0.99 2029 142 0.2205 0.2666 REMARK 3 5 3.5547 - 3.2999 0.99 2021 146 0.2259 0.2496 REMARK 3 6 3.2999 - 3.1054 0.98 2011 139 0.2440 0.2800 REMARK 3 7 3.1054 - 2.9499 0.98 2029 145 0.2428 0.2773 REMARK 3 8 2.9499 - 2.8215 0.98 2007 141 0.2493 0.3448 REMARK 3 9 2.8215 - 2.7129 0.98 1999 148 0.2628 0.2805 REMARK 3 10 2.7129 - 2.6193 0.98 2001 139 0.2557 0.3493 REMARK 3 11 2.6193 - 2.5374 0.97 2010 146 0.2865 0.3275 REMARK 3 12 2.5374 - 2.4649 0.96 1925 136 0.3011 0.3431 REMARK 3 13 2.4649 - 2.4000 0.93 1948 140 0.3188 0.3669 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5466 REMARK 3 ANGLE : 1.167 7442 REMARK 3 CHIRALITY : 0.064 796 REMARK 3 PLANARITY : 0.009 900 REMARK 3 DIHEDRAL : 15.980 2131 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3082 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 3082 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 3082 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30522 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 0.1 M DL-MALIC ACID, 3 REMARK 280 MM POTASIUM MYO-INOSITOL HEXAKISPHOSPHATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 14 REMARK 465 GLN B 15 REMARK 465 GLN B 16 REMARK 465 LYS B 17 REMARK 465 LYS B 18 REMARK 465 LYS B 19 REMARK 465 THR B 20 REMARK 465 SER B 21 REMARK 465 PRO B 22 REMARK 465 LEU B 23 REMARK 465 PRO B 80 REMARK 465 ARG B 81 REMARK 465 ARG B 82 REMARK 465 GLY B 83 REMARK 465 GLU B 84 REMARK 465 GLU B 85 REMARK 465 SER B 86 REMARK 465 SER B 87 REMARK 465 GLU B 88 REMARK 465 THR B 89 REMARK 465 GLU B 169 REMARK 465 ASN B 170 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 GLN C 16 REMARK 465 LYS C 17 REMARK 465 LYS C 18 REMARK 465 LYS C 19 REMARK 465 THR C 20 REMARK 465 SER C 21 REMARK 465 PRO C 22 REMARK 465 ARG C 81 REMARK 465 ARG C 82 REMARK 465 GLY C 83 REMARK 465 GLU C 169 REMARK 465 ASN C 170 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLN A 15 REMARK 465 GLN A 16 REMARK 465 LYS A 17 REMARK 465 LYS A 18 REMARK 465 LYS A 19 REMARK 465 THR A 20 REMARK 465 ARG A 81 REMARK 465 ARG A 82 REMARK 465 GLY A 83 REMARK 465 GLU A 169 REMARK 465 ASN A 170 REMARK 465 GLN D 16 REMARK 465 LYS D 17 REMARK 465 LYS D 18 REMARK 465 LYS D 19 REMARK 465 THR D 20 REMARK 465 SER D 21 REMARK 465 PRO D 80 REMARK 465 ARG D 81 REMARK 465 ARG D 82 REMARK 465 GLY D 83 REMARK 465 GLU D 84 REMARK 465 GLU D 85 REMARK 465 SER D 86 REMARK 465 SER D 87 REMARK 465 GLU D 88 REMARK 465 THR D 89 REMARK 465 GLU D 169 REMARK 465 ASN D 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O24 IHP A 502 O HOH A 605 1.44 REMARK 500 O HOH C 305 O HOH C 311 2.13 REMARK 500 O34 IHP C 201 O HOH C 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS C 36 O33 IHP D 202 1565 2.07 REMARK 500 CE1 HIS C 126 O23 IHP C 201 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 85 CB - CA - C ANGL. DEV. = -14.3 DEGREES REMARK 500 SER A 86 N - CA - CB ANGL. DEV. = 10.5 DEGREES REMARK 500 SER A 86 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 PRO D 101 C - N - CD ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 155 -1.84 -148.12 REMARK 500 THR C 89 164.28 84.00 REMARK 500 CYS C 155 -0.95 -148.03 REMARK 500 SER A 86 -42.54 -133.87 REMARK 500 CYS A 155 -0.71 -147.00 REMARK 500 CYS D 155 -0.82 -148.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 49 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 143 ND1 REMARK 620 2 CYS B 154 SG 108.6 REMARK 620 3 CYS B 155 SG 96.5 113.9 REMARK 620 4 CYS B 165 SG 118.6 97.6 122.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 143 ND1 REMARK 620 2 CYS C 154 SG 105.9 REMARK 620 3 CYS C 155 SG 96.2 117.6 REMARK 620 4 CYS C 165 SG 122.6 95.3 119.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 143 ND1 REMARK 620 2 CYS A 154 SG 109.3 REMARK 620 3 CYS A 155 SG 97.2 120.3 REMARK 620 4 CYS A 165 SG 114.2 115.0 99.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 143 ND1 REMARK 620 2 CYS D 154 SG 88.3 REMARK 620 3 CYS D 155 SG 89.0 108.9 REMARK 620 4 CYS D 165 SG 124.4 102.6 134.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y93 RELATED DB: PDB REMARK 900 RELATED ID: 4Y95 RELATED DB: PDB DBREF 4Y94 B 1 170 UNP Q3ZC95 Q3ZC95_BOVIN 1 170 DBREF 4Y94 C 1 170 UNP Q3ZC95 Q3ZC95_BOVIN 1 170 DBREF 4Y94 A 1 170 UNP Q3ZC95 Q3ZC95_BOVIN 1 170 DBREF 4Y94 D 1 170 UNP Q3ZC95 Q3ZC95_BOVIN 1 170 SEQADV 4Y94 GLY B 0 UNP Q3ZC95 EXPRESSION TAG SEQADV 4Y94 GLY C 0 UNP Q3ZC95 EXPRESSION TAG SEQADV 4Y94 GLY A 0 UNP Q3ZC95 EXPRESSION TAG SEQADV 4Y94 GLY D 0 UNP Q3ZC95 EXPRESSION TAG SEQRES 1 B 171 GLY MET ALA THR VAL ILE LEU GLU SER ILE PHE LEU LYS SEQRES 2 B 171 ARG SER GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE SEQRES 3 B 171 LYS LYS ARG LEU PHE LEU LEU THR VAL GLN LYS LEU SER SEQRES 4 B 171 TYR TYR GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER SEQRES 5 B 171 LYS LYS GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL SEQRES 6 B 171 GLU THR VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG SEQRES 7 B 171 GLN ILE PRO ARG ARG GLY GLU GLU SER SER GLU THR GLU SEQRES 8 B 171 GLN ILE SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN SEQRES 9 B 171 VAL VAL TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO SEQRES 10 B 171 THR GLU GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS SEQRES 11 B 171 ASN VAL ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR SEQRES 12 B 171 HIS PRO CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SEQRES 13 B 171 SER GLN THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU SEQRES 14 B 171 GLU ASN SEQRES 1 C 171 GLY MET ALA THR VAL ILE LEU GLU SER ILE PHE LEU LYS SEQRES 2 C 171 ARG SER GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE SEQRES 3 C 171 LYS LYS ARG LEU PHE LEU LEU THR VAL GLN LYS LEU SER SEQRES 4 C 171 TYR TYR GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER SEQRES 5 C 171 LYS LYS GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL SEQRES 6 C 171 GLU THR VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG SEQRES 7 C 171 GLN ILE PRO ARG ARG GLY GLU GLU SER SER GLU THR GLU SEQRES 8 C 171 GLN ILE SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN SEQRES 9 C 171 VAL VAL TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO SEQRES 10 C 171 THR GLU GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS SEQRES 11 C 171 ASN VAL ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR SEQRES 12 C 171 HIS PRO CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SEQRES 13 C 171 SER GLN THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU SEQRES 14 C 171 GLU ASN SEQRES 1 A 171 GLY MET ALA THR VAL ILE LEU GLU SER ILE PHE LEU LYS SEQRES 2 A 171 ARG SER GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE SEQRES 3 A 171 LYS LYS ARG LEU PHE LEU LEU THR VAL GLN LYS LEU SER SEQRES 4 A 171 TYR TYR GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER SEQRES 5 A 171 LYS LYS GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL SEQRES 6 A 171 GLU THR VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG SEQRES 7 A 171 GLN ILE PRO ARG ARG GLY GLU GLU SER SER GLU THR GLU SEQRES 8 A 171 GLN ILE SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN SEQRES 9 A 171 VAL VAL TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO SEQRES 10 A 171 THR GLU GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS SEQRES 11 A 171 ASN VAL ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR SEQRES 12 A 171 HIS PRO CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SEQRES 13 A 171 SER GLN THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU SEQRES 14 A 171 GLU ASN SEQRES 1 D 171 GLY MET ALA THR VAL ILE LEU GLU SER ILE PHE LEU LYS SEQRES 2 D 171 ARG SER GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE SEQRES 3 D 171 LYS LYS ARG LEU PHE LEU LEU THR VAL GLN LYS LEU SER SEQRES 4 D 171 TYR TYR GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER SEQRES 5 D 171 LYS LYS GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL SEQRES 6 D 171 GLU THR VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG SEQRES 7 D 171 GLN ILE PRO ARG ARG GLY GLU GLU SER SER GLU THR GLU SEQRES 8 D 171 GLN ILE SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN SEQRES 9 D 171 VAL VAL TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO SEQRES 10 D 171 THR GLU GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS SEQRES 11 D 171 ASN VAL ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR SEQRES 12 D 171 HIS PRO CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SEQRES 13 D 171 SER GLN THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU SEQRES 14 D 171 GLU ASN HET IHP B 201 36 HET ZN B 202 1 HET IHP C 201 36 HET ZN C 202 1 HET IHP A 501 36 HET IHP A 502 36 HET ZN A 503 1 HET IHP D 201 36 HET IHP D 202 36 HET ZN D 203 1 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM ZN ZINC ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 5 IHP 6(C6 H18 O24 P6) FORMUL 6 ZN 4(ZN 2+) FORMUL 15 HOH *43(H2 O) HELIX 1 AA1 PRO B 74 GLN B 78 5 5 HELIX 2 AA2 ILE B 92 GLU B 96 5 5 HELIX 3 AA3 THR B 117 ILE B 132 1 16 HELIX 4 AA4 GLU C 59 ILE C 61 5 3 HELIX 5 AA5 PRO C 74 GLN C 78 5 5 HELIX 6 AA6 GLU C 85 ILE C 94 1 10 HELIX 7 AA7 THR C 117 ILE C 132 1 16 HELIX 8 AA8 PRO A 74 GLN A 78 5 5 HELIX 9 AA9 THR A 89 ILE A 94 1 6 HELIX 10 AB1 THR A 117 ILE A 132 1 16 HELIX 11 AB2 GLU D 59 ILE D 61 5 3 HELIX 12 AB3 PRO D 74 GLN D 78 5 5 HELIX 13 AB4 ILE D 92 GLU D 96 5 5 HELIX 14 AB5 THR D 117 ILE D 132 1 16 SHEET 1 AA1 7 ARG B 48 ASP B 57 0 SHEET 2 AA1 7 LYS B 36 ASP B 43 -1 N GLU B 41 O GLY B 50 SHEET 3 AA1 7 LYS B 26 LEU B 32 -1 N LEU B 31 O SER B 38 SHEET 4 AA1 7 LEU B 6 LYS B 12 -1 N SER B 8 O PHE B 30 SHEET 5 AA1 7 GLY B 109 SER B 115 -1 O PHE B 114 N LEU B 11 SHEET 6 AA1 7 TYR B 100 TYR B 106 -1 N TYR B 100 O SER B 115 SHEET 7 AA1 7 ILE B 61 THR B 66 -1 N GLU B 65 O GLN B 103 SHEET 1 AA2 2 LYS B 141 TYR B 142 0 SHEET 2 AA2 2 GLN B 166 ILE B 167 -1 O GLN B 166 N TYR B 142 SHEET 1 AA3 2 TRP B 147 ILE B 148 0 SHEET 2 AA3 2 GLN B 151 TYR B 152 -1 O GLN B 151 N ILE B 148 SHEET 1 AA4 7 ARG C 48 ASP C 57 0 SHEET 2 AA4 7 LYS C 36 ASP C 43 -1 N LEU C 37 O ILE C 56 SHEET 3 AA4 7 PHE C 25 LEU C 32 -1 N LEU C 31 O SER C 38 SHEET 4 AA4 7 LEU C 6 ARG C 13 -1 N SER C 8 O PHE C 30 SHEET 5 AA4 7 GLY C 109 SER C 115 -1 O PHE C 114 N LEU C 11 SHEET 6 AA4 7 TYR C 100 TYR C 106 -1 N TYR C 100 O SER C 115 SHEET 7 AA4 7 CYS C 63 THR C 66 -1 N GLU C 65 O GLN C 103 SHEET 1 AA5 2 LYS C 141 TYR C 142 0 SHEET 2 AA5 2 GLN C 166 ILE C 167 -1 O GLN C 166 N TYR C 142 SHEET 1 AA6 2 TRP C 147 ILE C 148 0 SHEET 2 AA6 2 GLN C 151 TYR C 152 -1 O GLN C 151 N ILE C 148 SHEET 1 AA7 7 ARG A 48 ASP A 57 0 SHEET 2 AA7 7 LYS A 36 ASP A 43 -1 N GLU A 41 O SER A 51 SHEET 3 AA7 7 PHE A 25 LEU A 32 -1 N LEU A 31 O SER A 38 SHEET 4 AA7 7 LEU A 6 ARG A 13 -1 N SER A 8 O PHE A 30 SHEET 5 AA7 7 GLY A 109 SER A 115 -1 O PHE A 114 N LEU A 11 SHEET 6 AA7 7 TYR A 100 TYR A 106 -1 N TYR A 100 O SER A 115 SHEET 7 AA7 7 ILE A 61 THR A 66 -1 N GLU A 65 O GLN A 103 SHEET 1 AA8 2 LYS A 141 TYR A 142 0 SHEET 2 AA8 2 GLN A 166 ILE A 167 -1 O GLN A 166 N TYR A 142 SHEET 1 AA9 2 TRP A 147 ILE A 148 0 SHEET 2 AA9 2 GLN A 151 TYR A 152 -1 O GLN A 151 N ILE A 148 SHEET 1 AB1 7 ARG D 48 ASP D 57 0 SHEET 2 AB1 7 LYS D 36 ASP D 43 -1 N GLU D 41 O GLY D 50 SHEET 3 AB1 7 PHE D 25 LEU D 32 -1 N LEU D 31 O SER D 38 SHEET 4 AB1 7 LEU D 6 ARG D 13 -1 N SER D 8 O PHE D 30 SHEET 5 AB1 7 GLY D 109 SER D 115 -1 O PHE D 114 N LEU D 11 SHEET 6 AB1 7 TYR D 100 TYR D 106 -1 N TYR D 100 O SER D 115 SHEET 7 AB1 7 CYS D 63 THR D 66 -1 N GLU D 65 O GLN D 103 SHEET 1 AB2 2 LYS D 141 TYR D 142 0 SHEET 2 AB2 2 GLN D 166 ILE D 167 -1 O GLN D 166 N TYR D 142 SHEET 1 AB3 2 TRP D 147 ILE D 148 0 SHEET 2 AB3 2 GLN D 151 TYR D 152 -1 O GLN D 151 N ILE D 148 LINK ND1 HIS B 143 ZN ZN B 202 1555 1555 2.15 LINK SG CYS B 154 ZN ZN B 202 1555 1555 2.40 LINK SG CYS B 155 ZN ZN B 202 1555 1555 2.48 LINK SG CYS B 165 ZN ZN B 202 1555 1555 2.41 LINK ND1 HIS C 143 ZN ZN C 202 1555 1555 2.35 LINK SG CYS C 154 ZN ZN C 202 1555 1555 2.38 LINK SG CYS C 155 ZN ZN C 202 1555 1555 2.35 LINK SG CYS C 165 ZN ZN C 202 1555 1555 2.33 LINK ND1 HIS A 143 ZN ZN A 503 1555 1555 2.25 LINK SG CYS A 154 ZN ZN A 503 1555 1555 2.61 LINK SG CYS A 155 ZN ZN A 503 1555 1555 2.34 LINK SG CYS A 165 ZN ZN A 503 1555 1555 2.22 LINK ND1 HIS D 143 ZN ZN D 203 1555 1555 2.51 LINK SG CYS D 154 ZN ZN D 203 1555 1555 2.47 LINK SG CYS D 155 ZN ZN D 203 1555 1555 2.47 LINK SG CYS D 165 ZN ZN D 203 1555 1555 2.47 SITE 1 AC1 7 LYS A 71 LYS B 12 ASN B 24 LYS B 26 SITE 2 AC1 7 ARG B 28 TYR B 39 LYS B 53 SITE 1 AC2 4 HIS B 143 CYS B 154 CYS B 155 CYS B 165 SITE 1 AC3 12 LYS C 12 SER C 14 GLN C 15 ARG C 28 SITE 2 AC3 12 TYR C 39 LYS C 53 HIS C 126 ASN C 130 SITE 3 AC3 12 HOH C 301 HOH C 302 HOH C 313 MET D 1 SITE 1 AC4 4 HIS C 143 CYS C 154 CYS C 155 CYS C 165 SITE 1 AC5 8 LYS A 36 LYS A 52 SER A 55 LYS B 36 SITE 2 AC5 8 TYR B 40 ARG B 49 LYS B 52 GLU B 119 SITE 1 AC6 12 LYS A 12 SER A 14 ASN A 24 LYS A 26 SITE 2 AC6 12 ARG A 28 TYR A 39 LYS A 53 HIS A 126 SITE 3 AC6 12 ASN A 130 HOH A 601 HOH A 605 GLY B 0 SITE 1 AC7 4 HIS A 143 CYS A 154 CYS A 155 CYS A 165 SITE 1 AC8 7 LYS D 12 SER D 14 GLN D 15 ASN D 24 SITE 2 AC8 7 ARG D 28 TYR D 39 LYS D 53 SITE 1 AC9 8 ALA C 2 LYS C 36 LYS C 52 SER C 55 SITE 2 AC9 8 LYS D 36 TYR D 40 ARG D 49 LYS D 52 SITE 1 AD1 4 HIS D 143 CYS D 154 CYS D 155 CYS D 165 CRYST1 37.203 64.012 80.029 82.08 88.79 89.89 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026880 -0.000051 -0.000566 0.00000 SCALE2 0.000000 0.015622 -0.002172 0.00000 SCALE3 0.000000 0.000000 0.012618 0.00000