HEADER ISOMERASE 17-FEB-15 4Y96 TITLE CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM GEMMATA TITLE 2 OBSCURIGLOBUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: EXPRESSION TAG: GSH SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEMMATA OBSCURIGLOBUS; SOURCE 3 ORGANISM_TAXID: 114; SOURCE 4 STRAIN: UQM 2246; SOURCE 5 GENE: TIM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28B(+) KEYWDS TIM BARREL, ISOMERASE, TPI EXPDTA X-RAY DIFFRACTION AUTHOR S.ROMERO-ROMERO,A.RODRIGUEZ-ROMERO,D.A.FERNANDEZ-VELASCO REVDAT 4 27-SEP-23 4Y96 1 REMARK LINK ATOM REVDAT 3 12-AUG-15 4Y96 1 JRNL REVDAT 2 05-AUG-15 4Y96 1 REMARK REVDAT 1 15-JUL-15 4Y96 0 JRNL AUTH S.ROMERO-ROMERO,M.COSTAS,A.RODRIGUEZ-ROMERO, JRNL AUTH 2 D.ALEJANDRO FERNANDEZ-VELASCO JRNL TITL REVERSIBILITY AND TWO STATE BEHAVIOUR IN THE THERMAL JRNL TITL 2 UNFOLDING OF OLIGOMERIC TIM BARREL PROTEINS. JRNL REF PHYS CHEM CHEM PHYS V. 17 20699 2015 JRNL REFN ESSN 1463-9084 JRNL PMID 26206330 JRNL DOI 10.1039/C5CP01599E REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 81277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 4125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3693 - 4.8527 0.87 2655 129 0.1852 0.2441 REMARK 3 2 4.8527 - 3.8531 0.90 2597 140 0.1432 0.1663 REMARK 3 3 3.8531 - 3.3664 0.92 2596 142 0.1523 0.1441 REMARK 3 4 3.3664 - 3.0588 0.93 2611 136 0.1728 0.2004 REMARK 3 5 3.0588 - 2.8397 0.94 2605 154 0.1696 0.1977 REMARK 3 6 2.8397 - 2.6723 0.94 2633 133 0.1904 0.2149 REMARK 3 7 2.6723 - 2.5385 0.95 2632 136 0.1768 0.2001 REMARK 3 8 2.5385 - 2.4280 0.95 2620 155 0.1849 0.2315 REMARK 3 9 2.4280 - 2.3346 0.96 2639 154 0.1747 0.1951 REMARK 3 10 2.3346 - 2.2540 0.96 2649 133 0.1836 0.2109 REMARK 3 11 2.2540 - 2.1836 0.96 2635 147 0.1733 0.1849 REMARK 3 12 2.1836 - 2.1211 0.97 2690 132 0.1819 0.1802 REMARK 3 13 2.1211 - 2.0653 0.97 2674 142 0.1807 0.2018 REMARK 3 14 2.0653 - 2.0149 0.97 2639 146 0.1803 0.2165 REMARK 3 15 2.0149 - 1.9691 0.98 2662 153 0.1878 0.1862 REMARK 3 16 1.9691 - 1.9272 0.98 2665 161 0.1897 0.1984 REMARK 3 17 1.9272 - 1.8887 0.98 2696 114 0.1920 0.2469 REMARK 3 18 1.8887 - 1.8530 0.98 2695 146 0.1921 0.2306 REMARK 3 19 1.8530 - 1.8199 0.98 2684 139 0.1954 0.2472 REMARK 3 20 1.8199 - 1.7891 0.99 2674 154 0.1928 0.2048 REMARK 3 21 1.7891 - 1.7602 0.99 2660 157 0.2021 0.2327 REMARK 3 22 1.7602 - 1.7331 0.99 2717 129 0.2027 0.2516 REMARK 3 23 1.7331 - 1.7077 0.99 2650 166 0.2006 0.2217 REMARK 3 24 1.7077 - 1.6836 0.99 2725 123 0.2040 0.2669 REMARK 3 25 1.6836 - 1.6609 0.99 2711 150 0.1995 0.2349 REMARK 3 26 1.6609 - 1.6393 0.99 2671 156 0.2104 0.2239 REMARK 3 27 1.6393 - 1.6188 0.99 2671 144 0.2169 0.2662 REMARK 3 28 1.6188 - 1.5993 0.99 2703 145 0.2198 0.2670 REMARK 3 29 1.5993 - 1.5810 0.98 2693 109 0.2305 0.2504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3869 REMARK 3 ANGLE : 1.138 5266 REMARK 3 CHIRALITY : 0.042 609 REMARK 3 PLANARITY : 0.005 680 REMARK 3 DIHEDRAL : 12.698 1410 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 74.4248 -14.3477 2.1757 REMARK 3 T TENSOR REMARK 3 T11: 0.1603 T22: 0.1027 REMARK 3 T33: 0.1404 T12: -0.0091 REMARK 3 T13: -0.0158 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.1522 L22: 0.3104 REMARK 3 L33: 0.2552 L12: 0.0052 REMARK 3 L13: -0.0932 L23: -0.0520 REMARK 3 S TENSOR REMARK 3 S11: 0.0331 S12: 0.0195 S13: -0.0745 REMARK 3 S21: 0.0647 S22: -0.1104 S23: -0.0485 REMARK 3 S31: 0.0632 S32: -0.0254 S33: -0.1040 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81335 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 36.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1B9B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE, 0.1 M REMARK 280 SODIUM CITRATE TRIBASIC PH 5.6, 2 M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.48733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.74367 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.11550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.37183 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 111.85917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.48733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 44.74367 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 22.37183 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.11550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 111.85917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 430 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 449 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 467 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 691 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 447 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 449 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 455 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 468 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 475 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 PRO A 5 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 465 MET B 4 REMARK 465 PRO B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 687 O HOH B 669 1.90 REMARK 500 O HOH A 687 O HOH B 668 2.02 REMARK 500 O HOH A 686 O HOH A 687 2.09 REMARK 500 O HOH A 549 O HOH A 692 2.13 REMARK 500 O HOH B 453 O HOH B 625 2.16 REMARK 500 O HOH B 566 O HOH B 567 2.16 REMARK 500 O HOH B 510 O HOH B 533 2.16 REMARK 500 O HOH B 433 O HOH B 576 2.17 REMARK 500 O HOH A 634 O HOH A 675 2.17 REMARK 500 O HOH B 612 O HOH B 627 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 -148.54 52.40 REMARK 500 THR A 19 135.60 86.15 REMARK 500 LYS B 16 -149.56 53.85 REMARK 500 THR B 19 138.44 85.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 597 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 618 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 625 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 626 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 665 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 677 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 680 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 691 DISTANCE = 10.27 ANGSTROMS REMARK 525 HOH A 695 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 696 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A 698 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A 709 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 716 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH B 538 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 573 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 590 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B 602 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B 611 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 650 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B 656 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH B 657 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 665 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B 685 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 693 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 694 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 697 DISTANCE = 7.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 530 O REMARK 620 2 HOH A 637 O 77.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 171 OE1 REMARK 620 2 HOH B 622 O 80.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y8F RELATED DB: PDB REMARK 900 RELATED ID: 4Y90 RELATED DB: PDB REMARK 900 RELATED ID: 4Y9A RELATED DB: PDB DBREF 4Y96 A 1 255 PDB 4Y96 4Y96 1 255 DBREF 4Y96 B 1 255 PDB 4Y96 4Y96 1 255 SEQRES 1 A 255 GLY SER HIS MET PRO THR ARG LYS LYS PHE VAL ALA GLY SEQRES 2 A 255 ASN TRP LYS MET ASN THR THR LEU ALA GLU ALA LYS ALA SEQRES 3 A 255 LEU GLY ALA ALA VAL ALA LYS GLY VAL THR ASP ASP ARG SEQRES 4 A 255 VAL THR VAL ALA VAL PHE PRO PRO TYR PRO TRP LEU THR SEQRES 5 A 255 ALA VAL GLY GLU VAL LEU LYS GLY SER PRO VAL ALA LEU SEQRES 6 A 255 GLY ALA GLN ASP VAL SER SER GLU LYS LYS GLY ALA PHE SEQRES 7 A 255 THR GLY GLU VAL SER PRO ALA MET LEU LEU GLU THR GLY SEQRES 8 A 255 CYS LYS TYR ALA LEU ILE GLY HIS SER GLU ARG ARG HIS SEQRES 9 A 255 ILE ILE GLY GLU SER GLU THR PHE ILE ASN HIS LYS VAL SEQRES 10 A 255 HIS THR ALA LEU GLU GLU GLY LEU SER VAL VAL LEU CYS SEQRES 11 A 255 MET GLY GLU THR LEU ALA GLU ARG GLU ARG GLY LEU GLN SEQRES 12 A 255 GLU ARG VAL PHE GLN ARG GLN VAL TYR ALA ALA CYS ALA SEQRES 13 A 255 GLY LEU THR ASP GLU GLN PHE GLY ARG ILE VAL ILE ALA SEQRES 14 A 255 TYR GLU PRO VAL TRP ALA ILE GLY THR GLY LYS VAL ALA SEQRES 15 A 255 THR PRO GLU GLN ALA GLN GLU ALA HIS ALA PHE VAL ARG SEQRES 16 A 255 SER LYS LEU ARG LEU LEU TYR GLY ASP LYS ILE ALA ASP SEQRES 17 A 255 SER THR PRO ILE VAL TYR GLY GLY SER VAL THR PRO ASP SEQRES 18 A 255 ASN THR VAL GLY LEU MET SER GLN PRO ASP VAL ASP GLY SEQRES 19 A 255 ALA LEU VAL GLY GLY ALA SER LEU LYS ALA ASP SER PHE SEQRES 20 A 255 LEU ALA ILE VAL LYS ALA ALA GLY SEQRES 1 B 255 GLY SER HIS MET PRO THR ARG LYS LYS PHE VAL ALA GLY SEQRES 2 B 255 ASN TRP LYS MET ASN THR THR LEU ALA GLU ALA LYS ALA SEQRES 3 B 255 LEU GLY ALA ALA VAL ALA LYS GLY VAL THR ASP ASP ARG SEQRES 4 B 255 VAL THR VAL ALA VAL PHE PRO PRO TYR PRO TRP LEU THR SEQRES 5 B 255 ALA VAL GLY GLU VAL LEU LYS GLY SER PRO VAL ALA LEU SEQRES 6 B 255 GLY ALA GLN ASP VAL SER SER GLU LYS LYS GLY ALA PHE SEQRES 7 B 255 THR GLY GLU VAL SER PRO ALA MET LEU LEU GLU THR GLY SEQRES 8 B 255 CYS LYS TYR ALA LEU ILE GLY HIS SER GLU ARG ARG HIS SEQRES 9 B 255 ILE ILE GLY GLU SER GLU THR PHE ILE ASN HIS LYS VAL SEQRES 10 B 255 HIS THR ALA LEU GLU GLU GLY LEU SER VAL VAL LEU CYS SEQRES 11 B 255 MET GLY GLU THR LEU ALA GLU ARG GLU ARG GLY LEU GLN SEQRES 12 B 255 GLU ARG VAL PHE GLN ARG GLN VAL TYR ALA ALA CYS ALA SEQRES 13 B 255 GLY LEU THR ASP GLU GLN PHE GLY ARG ILE VAL ILE ALA SEQRES 14 B 255 TYR GLU PRO VAL TRP ALA ILE GLY THR GLY LYS VAL ALA SEQRES 15 B 255 THR PRO GLU GLN ALA GLN GLU ALA HIS ALA PHE VAL ARG SEQRES 16 B 255 SER LYS LEU ARG LEU LEU TYR GLY ASP LYS ILE ALA ASP SEQRES 17 B 255 SER THR PRO ILE VAL TYR GLY GLY SER VAL THR PRO ASP SEQRES 18 B 255 ASN THR VAL GLY LEU MET SER GLN PRO ASP VAL ASP GLY SEQRES 19 B 255 ALA LEU VAL GLY GLY ALA SER LEU LYS ALA ASP SER PHE SEQRES 20 B 255 LEU ALA ILE VAL LYS ALA ALA GLY HET NA A 301 1 HET NA A 302 1 HET PO4 A 303 5 HET CA A 304 1 HET NA B 301 1 HET PO4 B 302 5 HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION FORMUL 3 NA 3(NA 1+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 CA CA 2+ FORMUL 9 HOH *639(H2 O) HELIX 1 AA1 THR A 20 VAL A 35 1 16 HELIX 2 AA2 PRO A 47 PRO A 49 5 3 HELIX 3 AA3 TRP A 50 LYS A 59 1 10 HELIX 4 AA4 SER A 83 GLY A 91 1 9 HELIX 5 AA5 HIS A 99 ILE A 105 1 7 HELIX 6 AA6 SER A 109 GLY A 124 1 16 HELIX 7 AA7 THR A 134 ARG A 140 1 7 HELIX 8 AA8 LEU A 142 ALA A 156 1 15 HELIX 9 AA9 ASP A 160 GLY A 164 5 5 HELIX 10 AB1 PRO A 172 ILE A 176 5 5 HELIX 11 AB2 THR A 183 GLY A 203 1 21 HELIX 12 AB3 GLY A 203 THR A 210 1 8 HELIX 13 AB4 ASN A 222 SER A 228 1 7 HELIX 14 AB5 GLY A 238 LEU A 242 5 5 HELIX 15 AB6 LYS A 243 ALA A 254 1 12 HELIX 16 AB7 THR B 20 VAL B 35 1 16 HELIX 17 AB8 PRO B 47 PRO B 49 5 3 HELIX 18 AB9 TRP B 50 LEU B 58 1 9 HELIX 19 AC1 SER B 83 GLY B 91 1 9 HELIX 20 AC2 HIS B 99 ILE B 105 1 7 HELIX 21 AC3 SER B 109 GLY B 124 1 16 HELIX 22 AC4 THR B 134 ARG B 140 1 7 HELIX 23 AC5 LEU B 142 CYS B 155 1 14 HELIX 24 AC6 THR B 159 GLY B 164 1 6 HELIX 25 AC7 PRO B 172 ILE B 176 5 5 HELIX 26 AC8 THR B 183 GLY B 203 1 21 HELIX 27 AC9 GLY B 203 THR B 210 1 8 HELIX 28 AD1 ASN B 222 SER B 228 1 7 HELIX 29 AD2 GLY B 238 LEU B 242 5 5 HELIX 30 AD3 LYS B 243 ALA B 254 1 12 SHEET 1 AA1 9 PHE A 10 ASN A 14 0 SHEET 2 AA1 9 THR A 41 PHE A 45 1 O THR A 41 N VAL A 11 SHEET 3 AA1 9 ALA A 64 ALA A 67 1 O ALA A 64 N VAL A 42 SHEET 4 AA1 9 CYS A 92 ILE A 97 1 O LYS A 93 N LEU A 65 SHEET 5 AA1 9 SER A 126 MET A 131 1 O CYS A 130 N ILE A 97 SHEET 6 AA1 9 ILE A 166 TYR A 170 1 O ALA A 169 N LEU A 129 SHEET 7 AA1 9 ILE A 212 GLY A 215 1 O GLY A 215 N TYR A 170 SHEET 8 AA1 9 GLY A 234 VAL A 237 1 O LEU A 236 N TYR A 214 SHEET 9 AA1 9 PHE A 10 ASN A 14 1 N ALA A 12 O VAL A 237 SHEET 1 AA2 9 PHE B 10 ASN B 14 0 SHEET 2 AA2 9 THR B 41 PHE B 45 1 O THR B 41 N VAL B 11 SHEET 3 AA2 9 ALA B 64 ALA B 67 1 O ALA B 64 N VAL B 42 SHEET 4 AA2 9 CYS B 92 ILE B 97 1 O LYS B 93 N LEU B 65 SHEET 5 AA2 9 SER B 126 MET B 131 1 O SER B 126 N LYS B 93 SHEET 6 AA2 9 ILE B 166 TYR B 170 1 O ALA B 169 N LEU B 129 SHEET 7 AA2 9 ILE B 212 GLY B 215 1 O VAL B 213 N TYR B 170 SHEET 8 AA2 9 GLY B 234 VAL B 237 1 O LEU B 236 N TYR B 214 SHEET 9 AA2 9 PHE B 10 ASN B 14 1 N ALA B 12 O VAL B 237 LINK NA NA A 301 O HOH A 530 1555 1555 2.91 LINK NA NA A 301 O HOH A 637 1555 1555 2.96 LINK OE1 GLU B 171 NA NA B 301 1555 1555 2.94 LINK NA NA B 301 O HOH B 622 1555 1555 3.01 SITE 1 AC1 5 ASN A 14 LYS A 16 HIS A 99 HOH A 530 SITE 2 AC1 5 HOH A 637 SITE 1 AC2 10 ALA A 175 ILE A 176 GLY A 177 SER A 217 SITE 2 AC2 10 GLY A 238 GLY A 239 HOH A 402 HOH A 506 SITE 3 AC2 10 HOH A 529 HOH A 530 SITE 1 AC3 2 ASP A 204 LYS A 205 SITE 1 AC4 5 ASN B 14 LYS B 16 HIS B 99 GLU B 171 SITE 2 AC4 5 HOH B 622 SITE 1 AC5 11 ALA B 175 ILE B 176 GLY B 177 SER B 217 SITE 2 AC5 11 GLY B 238 GLY B 239 HOH B 409 HOH B 516 SITE 3 AC5 11 HOH B 518 HOH B 537 HOH B 622 CRYST1 124.778 124.778 134.231 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008014 0.004627 0.000000 0.00000 SCALE2 0.000000 0.009254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007450 0.00000