HEADER OXIDOREDUCTASE 17-FEB-15 4Y9D TITLE CRYSTAL STRUCTURE OF LIGD IN COMPLEX WITH NADH FROM SPHINGOBIUM SP. TITLE 2 STRAIN SYK-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C ALPHA-DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM SP. SYK-6; SOURCE 3 ORGANISM_TAXID: 627192; SOURCE 4 GENE: LIGD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SHORT CHAIN DEHYDROGENASE/REDUCTASE SDR FAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.PEREIRA,R.P.MCANDREW,R.A.HEINS,K.L.SALE,B.A.SIMMONS,P.D.ADAMS REVDAT 4 28-FEB-24 4Y9D 1 JRNL REMARK REVDAT 3 01-JUN-16 4Y9D 1 JRNL REVDAT 2 16-MAR-16 4Y9D 1 SOURCE REVDAT 1 09-MAR-16 4Y9D 0 JRNL AUTH J.H.PEREIRA,R.A.HEINS,D.L.GALL,R.P.MCANDREW,K.DENG, JRNL AUTH 2 K.C.HOLLAND,T.J.DONOHUE,D.R.NOGUERA,B.A.SIMMONS,K.L.SALE, JRNL AUTH 3 J.RALPH,P.D.ADAMS JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE EARLY AND JRNL TITL 2 LATE ENZYMES IN THE LIGNIN BETA-ARYL ETHER CLEAVAGE PATHWAY JRNL TITL 3 FROM SPHINGOBIUM SP. SYK-6. JRNL REF J.BIOL.CHEM. V. 291 10228 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26940872 JRNL DOI 10.1074/JBC.M115.700427 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1839 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.130 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.2 REMARK 3 NUMBER OF REFLECTIONS : 16006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7275 - 4.6052 0.99 1648 185 0.1713 0.2022 REMARK 3 2 4.6052 - 3.6556 0.97 1506 168 0.1678 0.2004 REMARK 3 3 3.6556 - 3.1936 0.98 1531 160 0.2141 0.2337 REMARK 3 4 3.1936 - 2.9017 0.85 1284 146 0.2582 0.2971 REMARK 3 5 2.9017 - 2.6937 0.77 1164 136 0.2575 0.3015 REMARK 3 6 2.6937 - 2.5349 0.74 1146 126 0.2388 0.3001 REMARK 3 7 2.5349 - 2.4080 0.71 1070 120 0.2415 0.2825 REMARK 3 8 2.4080 - 2.3031 0.70 1061 121 0.2423 0.3085 REMARK 3 9 2.3031 - 2.2145 0.71 1071 115 0.2733 0.3148 REMARK 3 10 2.2145 - 2.1381 0.73 1081 131 0.3367 0.3536 REMARK 3 11 2.1381 - 2.0712 0.65 973 110 0.3448 0.4405 REMARK 3 12 2.0712 - 2.0120 0.57 851 102 0.3749 0.3777 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1783 REMARK 3 ANGLE : 1.003 2421 REMARK 3 CHIRALITY : 0.041 273 REMARK 3 PLANARITY : 0.005 315 REMARK 3 DIHEDRAL : 15.903 634 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8924 16.7667 -20.9088 REMARK 3 T TENSOR REMARK 3 T11: 0.4922 T22: 0.5712 REMARK 3 T33: 0.4212 T12: 0.0999 REMARK 3 T13: 0.0641 T23: 0.0820 REMARK 3 L TENSOR REMARK 3 L11: 0.2358 L22: 0.4704 REMARK 3 L33: 0.2468 L12: -0.0887 REMARK 3 L13: 0.0816 L23: -0.2031 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: -0.4084 S13: 0.0407 REMARK 3 S21: -0.0950 S22: -0.0893 S23: 0.0067 REMARK 3 S31: 0.1584 S32: 0.2119 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3584 20.5416 -36.6995 REMARK 3 T TENSOR REMARK 3 T11: 0.4605 T22: 0.3569 REMARK 3 T33: 0.4535 T12: 0.0774 REMARK 3 T13: 0.0391 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.2042 L22: -0.0180 REMARK 3 L33: 2.4624 L12: 0.9263 REMARK 3 L13: -0.6314 L23: -0.4969 REMARK 3 S TENSOR REMARK 3 S11: -0.2360 S12: -0.1951 S13: 0.1529 REMARK 3 S21: -0.2233 S22: -0.0248 S23: -0.0154 REMARK 3 S31: 0.5019 S32: 0.1458 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4147 36.7752 -34.7395 REMARK 3 T TENSOR REMARK 3 T11: 0.4467 T22: 0.4499 REMARK 3 T33: 0.5652 T12: 0.1488 REMARK 3 T13: 0.0014 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.4476 L22: 0.3316 REMARK 3 L33: 0.4328 L12: 0.2875 REMARK 3 L13: -0.1947 L23: 0.1008 REMARK 3 S TENSOR REMARK 3 S11: 0.1063 S12: -0.3512 S13: 0.2625 REMARK 3 S21: 0.0564 S22: -0.1550 S23: -0.0415 REMARK 3 S31: -0.2308 S32: -0.4336 S33: -0.0075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 1.5 M LITHIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.90433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.80867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 89.80867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.90433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -89.80867 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 191 REMARK 465 SER A 192 REMARK 465 ASN A 193 REMARK 465 ILE A 194 REMARK 465 ALA A 195 REMARK 465 GLU A 196 REMARK 465 ALA A 197 REMARK 465 SER A 198 REMARK 465 ARG A 199 REMARK 465 LEU A 200 REMARK 465 ARG A 201 REMARK 465 PRO A 202 REMARK 465 ALA A 203 REMARK 465 LYS A 204 REMARK 465 TYR A 205 REMARK 465 GLY A 206 REMARK 465 THR A 207 REMARK 465 SER A 208 REMARK 465 GLY A 209 REMARK 465 TYR A 210 REMARK 465 VAL A 211 REMARK 465 GLU A 212 REMARK 465 ASN A 213 REMARK 465 GLU A 214 REMARK 465 GLU A 215 REMARK 465 SER A 216 REMARK 465 ILE A 217 REMARK 465 ALA A 218 REMARK 465 SER A 219 REMARK 465 LEU A 220 REMARK 465 HIS A 221 REMARK 465 SER A 222 REMARK 465 ILE A 223 REMARK 465 HIS A 224 REMARK 465 GLN A 225 REMARK 465 GLU A 273 REMARK 465 SER A 274 REMARK 465 ASP A 275 REMARK 465 PRO A 276 REMARK 465 GLU A 277 REMARK 465 GLY A 278 REMARK 465 ALA A 279 REMARK 465 ARG A 280 REMARK 465 GLN A 281 REMARK 465 ARG A 282 REMARK 465 VAL A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 LEU A 286 REMARK 465 MET A 287 REMARK 465 ALA A 288 REMARK 465 TRP A 289 REMARK 465 GLY A 290 REMARK 465 ARG A 291 REMARK 465 ASP A 292 REMARK 465 ARG A 293 REMARK 465 THR A 294 REMARK 465 ARG A 295 REMARK 465 VAL A 296 REMARK 465 PHE A 297 REMARK 465 ALA A 298 REMARK 465 GLU A 299 REMARK 465 GLY A 300 REMARK 465 ASP A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 GLY A 304 REMARK 465 ALA A 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 226 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 138 HG SER A 183 1.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 116 -57.93 -120.78 REMARK 500 PRO A 136 156.50 -49.21 REMARK 500 SER A 143 -122.61 -100.11 REMARK 500 PRO A 250 46.44 -83.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAI A 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y98 RELATED DB: PDB DBREF 4Y9D A 1 305 UNP G2IN91 G2IN91_9SPHN 1 305 SEQRES 1 A 305 MET LYS ASP PHE GLN ASP GLN VAL ALA PHE ILE THR GLY SEQRES 2 A 305 GLY ALA SER GLY ALA GLY PHE GLY GLN ALA LYS VAL PHE SEQRES 3 A 305 GLY GLN ALA GLY ALA LYS ILE VAL VAL ALA ASP VAL ARG SEQRES 4 A 305 ALA GLU ALA VAL GLU LYS ALA VAL ALA GLU LEU GLU GLY SEQRES 5 A 305 LEU GLY ILE THR ALA HIS GLY ILE VAL LEU ASP ILE MET SEQRES 6 A 305 ASP ARG GLU ALA TYR ALA ARG ALA ALA ASP GLU VAL GLU SEQRES 7 A 305 ALA VAL PHE GLY GLN ALA PRO THR LEU LEU SER ASN THR SEQRES 8 A 305 ALA GLY VAL ASN SER PHE GLY PRO ILE GLU LYS THR THR SEQRES 9 A 305 TYR ASP ASP PHE ASP TRP ILE ILE GLY VAL ASN LEU ASN SEQRES 10 A 305 GLY VAL ILE ASN GLY MET VAL THR PHE VAL PRO ARG MET SEQRES 11 A 305 ILE ALA SER GLY ARG PRO GLY HIS ILE VAL THR VAL SER SEQRES 12 A 305 SER LEU GLY GLY PHE MET GLY SER ALA LEU ALA GLY PRO SEQRES 13 A 305 TYR SER ALA ALA LYS ALA ALA SER ILE ASN LEU MET GLU SEQRES 14 A 305 GLY TYR ARG GLN GLY LEU GLU LYS TYR GLY ILE GLY VAL SEQRES 15 A 305 SER VAL CYS THR PRO ALA ASN ILE LYS SER ASN ILE ALA SEQRES 16 A 305 GLU ALA SER ARG LEU ARG PRO ALA LYS TYR GLY THR SER SEQRES 17 A 305 GLY TYR VAL GLU ASN GLU GLU SER ILE ALA SER LEU HIS SEQRES 18 A 305 SER ILE HIS GLN HIS GLY LEU GLU PRO GLU LYS LEU ALA SEQRES 19 A 305 GLU ALA ILE LYS LYS GLY VAL GLU ASP ASN ALA LEU TYR SEQRES 20 A 305 ILE ILE PRO TYR PRO GLU VAL ARG GLU GLY LEU GLU LYS SEQRES 21 A 305 HIS PHE GLN ALA ILE ILE ASP SER VAL ALA PRO MET GLU SEQRES 22 A 305 SER ASP PRO GLU GLY ALA ARG GLN ARG VAL GLU ALA LEU SEQRES 23 A 305 MET ALA TRP GLY ARG ASP ARG THR ARG VAL PHE ALA GLU SEQRES 24 A 305 GLY ASP LYS LYS GLY ALA HET NAI A 401 39 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN NAI NADH FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 HOH *12(H2 O) HELIX 1 AA1 SER A 16 GLN A 28 1 13 HELIX 2 AA2 ARG A 39 GLY A 52 1 14 HELIX 3 AA3 ASP A 66 GLY A 82 1 17 HELIX 4 AA4 PRO A 99 THR A 103 5 5 HELIX 5 AA5 THR A 104 LEU A 116 1 13 HELIX 6 AA6 LEU A 116 GLY A 134 1 19 HELIX 7 AA7 SER A 144 MET A 149 5 6 HELIX 8 AA8 ALA A 154 GLU A 176 1 23 HELIX 9 AA9 GLU A 229 ASN A 244 1 16 HELIX 10 AB1 TYR A 251 GLU A 253 5 3 HELIX 11 AB2 VAL A 254 VAL A 269 1 16 SHEET 1 AA1 7 ALA A 57 VAL A 61 0 SHEET 2 AA1 7 LYS A 32 ASP A 37 1 N VAL A 35 O HIS A 58 SHEET 3 AA1 7 VAL A 8 THR A 12 1 N ALA A 9 O VAL A 34 SHEET 4 AA1 7 LEU A 87 ASN A 90 1 O LEU A 87 N PHE A 10 SHEET 5 AA1 7 GLY A 137 VAL A 142 1 O VAL A 140 N LEU A 88 SHEET 6 AA1 7 ILE A 180 CYS A 185 1 O SER A 183 N ILE A 139 SHEET 7 AA1 7 TYR A 247 ILE A 248 1 O ILE A 248 N VAL A 184 CISPEP 1 PRO A 271 MET A 272 0 6.47 SITE 1 AC1 12 GLY A 13 SER A 16 GLY A 17 ALA A 18 SITE 2 AC1 12 ASP A 37 ARG A 39 LEU A 62 ASP A 63 SITE 3 AC1 12 ILE A 64 ALA A 92 VAL A 94 HOH A 509 CRYST1 61.762 61.762 134.713 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016191 0.009348 0.000000 0.00000 SCALE2 0.000000 0.018696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007423 0.00000