HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 17-FEB-15 4YAD TITLE CRYSTAL STRUCTURE OF TRIM24 PHD-BROMODOMAIN COMPLEXED WITH 2,4- TITLE 2 DIMETHOXY-N-(1-METHYL-2-OXO-1,2,3,4-TETRAHYDROQUINOLIN-6-YL)BENZENE- TITLE 3 1-SULFONAMIDE (3B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INTERMEDIARY FACTOR 1-ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMODOMAIN (UNP RESIDUES 824-1006); COMPND 5 SYNONYM: TIF1-ALPHA,E3 UBIQUITIN-PROTEIN LIGASE TRIM24,RING FINGER COMPND 6 PROTEIN 82,TRIPARTITE MOTIF-CONTAINING PROTEIN 24; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM24, RNF82, TIF1, TIF1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1 KEYWDS CENTER FOR BIOMOLECULAR STRUCTURE AND FUNCTION, BROMODOMAIN, TRIM24, KEYWDS 2 INHIBITOR, TRANSCRIPTION-TRANSCRIPTION INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.PONCET-MONTANGE,W.PALMER,P.JONES REVDAT 3 27-SEP-23 4YAD 1 JRNL REMARK REVDAT 2 09-MAR-16 4YAD 1 JRNL REVDAT 1 24-JUN-15 4YAD 0 JRNL AUTH W.S.PALMER,G.PONCET-MONTANGE,G.LIU,A.PETROCCHI,N.REYNA, JRNL AUTH 2 G.SUBRAMANIAN,J.THEROFF,A.YAU,M.KOST-ALIMOVA, JRNL AUTH 3 J.P.BARDENHAGEN,E.LEO,H.E.SHEPARD,T.N.TIEU,X.SHI,Y.ZHAN, JRNL AUTH 4 S.ZHAO,M.C.BARTON,G.DRAETTA,C.TONIATTI,P.JONES,M.GECK DO, JRNL AUTH 5 J.N.ANDERSEN JRNL TITL STRUCTURE-GUIDED DESIGN OF IACS-9571, A SELECTIVE JRNL TITL 2 HIGH-AFFINITY DUAL TRIM24-BRPF1 BROMODOMAIN INHIBITOR. JRNL REF J.MED.CHEM. V. 59 1440 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26061247 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00405 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2917 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2892 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 344 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.633 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3046 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2834 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4129 ; 2.051 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6588 ; 1.368 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 6.376 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;39.234 ;25.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;15.715 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.529 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.168 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3334 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 648 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1420 ; 2.908 ; 2.496 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1419 ; 2.900 ; 2.495 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1768 ; 4.300 ; 3.717 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 4YAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 60.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.60400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3O34 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2-2.4M AMMONIUM SULFATE, 0.1M HEPES REMARK 280 BUFFER PH 7.5, 2% PEG400 AND 8-9% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.67500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.47500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.67500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.47500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 823 REMARK 465 SER A 886 REMARK 465 HIS A 887 REMARK 465 ASN A 888 REMARK 465 SER A 889 REMARK 465 GLU A 890 REMARK 465 SER B 823 REMARK 465 SER B 886 REMARK 465 HIS B 887 REMARK 465 ASN B 888 REMARK 465 SER B 889 REMARK 465 GLU B 890 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1222 O HOH B 1230 1.75 REMARK 500 O LEU A 930 O HOH A 1354 1.81 REMARK 500 O VAL A 928 OH TYR A 936 1.98 REMARK 500 O HOH A 1321 O HOH A 1343 2.05 REMARK 500 OE2 GLU A 919 O HOH A 1201 2.05 REMARK 500 O HOH B 1229 O HOH B 1239 2.18 REMARK 500 OD2 ASP A 944 OG SER A 946 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1239 O HOH A 1256 1545 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 951 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 951 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 956 61.92 -115.42 REMARK 500 ASP A 983 15.13 54.96 REMARK 500 ASP B 934 -2.04 66.47 REMARK 500 TYR B 956 62.18 -105.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1346 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B1353 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 829 SG REMARK 620 2 CYS A 832 SG 111.6 REMARK 620 3 HIS A 849 ND1 102.5 99.2 REMARK 620 4 CYS A 852 SG 109.4 119.1 113.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 841 SG REMARK 620 2 CYS A 844 SG 110.0 REMARK 620 3 CYS A 867 SG 109.3 112.6 REMARK 620 4 CYS A 870 SG 110.5 104.2 110.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 829 SG REMARK 620 2 CYS B 832 SG 113.9 REMARK 620 3 HIS B 849 ND1 102.4 96.6 REMARK 620 4 CYS B 852 SG 110.6 116.2 115.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 841 SG REMARK 620 2 CYS B 844 SG 108.7 REMARK 620 3 CYS B 867 SG 110.6 112.2 REMARK 620 4 CYS B 870 SG 112.9 103.3 109.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4A7 A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4A7 B 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 1105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YAB RELATED DB: PDB REMARK 900 RELATED ID: 4YAT RELATED DB: PDB REMARK 900 RELATED ID: 4YAX RELATED DB: PDB REMARK 900 RELATED ID: 4YBM RELATED DB: PDB REMARK 900 RELATED ID: 4YBS RELATED DB: PDB REMARK 900 RELATED ID: 4YBT RELATED DB: PDB DBREF 4YAD A 824 1006 UNP O15164 TIF1A_HUMAN 824 1006 DBREF 4YAD B 824 1006 UNP O15164 TIF1A_HUMAN 824 1006 SEQADV 4YAD SER A 823 UNP O15164 EXPRESSION TAG SEQADV 4YAD SER B 823 UNP O15164 EXPRESSION TAG SEQRES 1 A 184 SER PRO ASN GLU ASP TRP CYS ALA VAL CYS GLN ASN GLY SEQRES 2 A 184 GLY GLU LEU LEU CYS CYS GLU LYS CYS PRO LYS VAL PHE SEQRES 3 A 184 HIS LEU SER CYS HIS VAL PRO THR LEU THR ASN PHE PRO SEQRES 4 A 184 SER GLY GLU TRP ILE CYS THR PHE CYS ARG ASP LEU SER SEQRES 5 A 184 LYS PRO GLU VAL GLU TYR ASP CYS ASP ALA PRO SER HIS SEQRES 6 A 184 ASN SER GLU LYS LYS LYS THR GLU GLY LEU VAL LYS LEU SEQRES 7 A 184 THR PRO ILE ASP LYS ARG LYS CYS GLU ARG LEU LEU LEU SEQRES 8 A 184 PHE LEU TYR CYS HIS GLU MET SER LEU ALA PHE GLN ASP SEQRES 9 A 184 PRO VAL PRO LEU THR VAL PRO ASP TYR TYR LYS ILE ILE SEQRES 10 A 184 LYS ASN PRO MET ASP LEU SER THR ILE LYS LYS ARG LEU SEQRES 11 A 184 GLN GLU ASP TYR SER MET TYR SER LYS PRO GLU ASP PHE SEQRES 12 A 184 VAL ALA ASP PHE ARG LEU ILE PHE GLN ASN CYS ALA GLU SEQRES 13 A 184 PHE ASN GLU PRO ASP SER GLU VAL ALA ASN ALA GLY ILE SEQRES 14 A 184 LYS LEU GLU ASN TYR PHE GLU GLU LEU LEU LYS ASN LEU SEQRES 15 A 184 TYR PRO SEQRES 1 B 184 SER PRO ASN GLU ASP TRP CYS ALA VAL CYS GLN ASN GLY SEQRES 2 B 184 GLY GLU LEU LEU CYS CYS GLU LYS CYS PRO LYS VAL PHE SEQRES 3 B 184 HIS LEU SER CYS HIS VAL PRO THR LEU THR ASN PHE PRO SEQRES 4 B 184 SER GLY GLU TRP ILE CYS THR PHE CYS ARG ASP LEU SER SEQRES 5 B 184 LYS PRO GLU VAL GLU TYR ASP CYS ASP ALA PRO SER HIS SEQRES 6 B 184 ASN SER GLU LYS LYS LYS THR GLU GLY LEU VAL LYS LEU SEQRES 7 B 184 THR PRO ILE ASP LYS ARG LYS CYS GLU ARG LEU LEU LEU SEQRES 8 B 184 PHE LEU TYR CYS HIS GLU MET SER LEU ALA PHE GLN ASP SEQRES 9 B 184 PRO VAL PRO LEU THR VAL PRO ASP TYR TYR LYS ILE ILE SEQRES 10 B 184 LYS ASN PRO MET ASP LEU SER THR ILE LYS LYS ARG LEU SEQRES 11 B 184 GLN GLU ASP TYR SER MET TYR SER LYS PRO GLU ASP PHE SEQRES 12 B 184 VAL ALA ASP PHE ARG LEU ILE PHE GLN ASN CYS ALA GLU SEQRES 13 B 184 PHE ASN GLU PRO ASP SER GLU VAL ALA ASN ALA GLY ILE SEQRES 14 B 184 LYS LEU GLU ASN TYR PHE GLU GLU LEU LEU LYS ASN LEU SEQRES 15 B 184 TYR PRO HET ZN A1101 1 HET ZN A1102 1 HET 4A7 A1103 39 HET GOL A1104 6 HET CL A1105 1 HET ZN B1101 1 HET ZN B1102 1 HET 4A7 B1103 26 HET GOL B1104 6 HET CL B1105 1 HETNAM ZN ZINC ION HETNAM 4A7 2,4-DIMETHOXY-N-(1-METHYL-2-OXO-1,2,3,4- HETNAM 2 4A7 TETRAHYDROQUINOLIN-6-YL)BENZENESULFONAMIDE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 4A7 2(C18 H20 N2 O5 S) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 CL 2(CL 1-) FORMUL 13 HOH *344(H2 O) HELIX 1 AA1 TYR A 880 ALA A 884 5 5 HELIX 2 AA2 THR A 901 HIS A 918 1 18 HELIX 3 AA3 SER A 921 GLN A 925 5 5 HELIX 4 AA4 ASP A 934 ILE A 939 1 6 HELIX 5 AA5 ASP A 944 GLU A 954 1 11 HELIX 6 AA6 LYS A 961 ASN A 980 1 20 HELIX 7 AA7 SER A 984 TYR A 1005 1 22 HELIX 8 AA8 TYR B 880 ALA B 884 5 5 HELIX 9 AA9 THR B 901 HIS B 918 1 18 HELIX 10 AB1 GLU B 919 GLN B 925 5 7 HELIX 11 AB2 ASP B 934 ILE B 939 1 6 HELIX 12 AB3 ASP B 944 GLU B 954 1 11 HELIX 13 AB4 LYS B 961 ASN B 980 1 20 HELIX 14 AB5 SER B 984 TYR B 1005 1 22 SHEET 1 AA1 2 LEU A 839 CYS A 840 0 SHEET 2 AA1 2 VAL A 847 PHE A 848 -1 O PHE A 848 N LEU A 839 SHEET 1 AA2 2 LEU B 839 CYS B 840 0 SHEET 2 AA2 2 VAL B 847 PHE B 848 -1 O PHE B 848 N LEU B 839 LINK SG CYS A 829 ZN ZN A1101 1555 1555 2.24 LINK SG CYS A 832 ZN ZN A1101 1555 1555 2.31 LINK SG CYS A 841 ZN ZN A1102 1555 1555 2.35 LINK SG CYS A 844 ZN ZN A1102 1555 1555 2.37 LINK ND1 HIS A 849 ZN ZN A1101 1555 1555 2.19 LINK SG CYS A 852 ZN ZN A1101 1555 1555 2.25 LINK SG CYS A 867 ZN ZN A1102 1555 1555 2.39 LINK SG CYS A 870 ZN ZN A1102 1555 1555 2.22 LINK SG CYS B 829 ZN ZN B1101 1555 1555 2.24 LINK SG CYS B 832 ZN ZN B1101 1555 1555 2.25 LINK SG CYS B 841 ZN ZN B1102 1555 1555 2.17 LINK SG CYS B 844 ZN ZN B1102 1555 1555 2.34 LINK ND1 HIS B 849 ZN ZN B1101 1555 1555 2.21 LINK SG CYS B 852 ZN ZN B1101 1555 1555 2.31 LINK SG CYS B 867 ZN ZN B1102 1555 1555 2.39 LINK SG CYS B 870 ZN ZN B1102 1555 1555 2.36 CISPEP 1 VAL A 854 PRO A 855 0 1.41 CISPEP 2 VAL B 854 PRO B 855 0 -1.00 SITE 1 AC1 4 CYS A 829 CYS A 832 HIS A 849 CYS A 852 SITE 1 AC2 4 CYS A 841 CYS A 844 CYS A 867 CYS A 870 SITE 1 AC3 10 ALA A 923 PHE A 924 PRO A 929 VAL A 932 SITE 2 AC3 10 ASN A 980 GLU A 985 HOH A1258 HOH A1259 SITE 3 AC3 10 HOH A1283 HOH A1302 SITE 1 AC4 7 SER A 851 THR A 856 LYS A 949 HOH A1208 SITE 2 AC4 7 HOH A1320 HOH A1342 HOH A1366 SITE 1 AC5 4 CYS B 829 CYS B 832 HIS B 849 CYS B 852 SITE 1 AC6 4 CYS B 841 CYS B 844 CYS B 867 CYS B 870 SITE 1 AC7 8 ALA B 923 PHE B 924 VAL B 928 PRO B 929 SITE 2 AC7 8 PHE B 979 ASN B 980 HOH B1219 HOH B1249 SITE 1 AC8 4 ARG B 910 ASN B1003 LEU B1004 HOH B1226 SITE 1 AC9 1 ARG B 906 CRYST1 89.350 36.950 129.280 90.00 110.03 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011192 0.000000 0.004080 0.00000 SCALE2 0.000000 0.027064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008233 0.00000