HEADER OXIDOREDUCTASE 17-FEB-15 4YAE TITLE CRYSTAL STRUCTURE OF LIGL-APO FORM FROM SPHINGOBIUM SP. STRAIN SYK-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C ALPHA-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CALPHA-DEHYDROGENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM SP. SYK-6; SOURCE 3 ORGANISM_TAXID: 627192; SOURCE 4 GENE: LIGL, SLG_33660; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SHORT CHAIN DEHYDROGENASE/REDUCTASE SDR FAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.PEREIRA,R.P.MCANDREW,R.A.HEINS,K.L.SALE,B.A.SIMMONS,P.D.ADAMS REVDAT 4 28-FEB-24 4YAE 1 JRNL REMARK REVDAT 3 01-JUN-16 4YAE 1 JRNL REVDAT 2 16-MAR-16 4YAE 1 JRNL REVDAT 1 09-MAR-16 4YAE 0 JRNL AUTH J.H.PEREIRA,R.A.HEINS,D.L.GALL,R.P.MCANDREW,K.DENG, JRNL AUTH 2 K.C.HOLLAND,T.J.DONOHUE,D.R.NOGUERA,B.A.SIMMONS,K.L.SALE, JRNL AUTH 3 J.RALPH,P.D.ADAMS JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE EARLY AND JRNL TITL 2 LATE ENZYMES IN THE LIGNIN BETA-ARYL ETHER CLEAVAGE PATHWAY JRNL TITL 3 FROM SPHINGOBIUM SP. SYK-6. JRNL REF J.BIOL.CHEM. V. 291 10228 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26940872 JRNL DOI 10.1074/JBC.M115.700427 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1839 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 66929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0144 - 3.8593 1.00 4741 146 0.1452 0.1476 REMARK 3 2 3.8593 - 3.0634 1.00 4659 144 0.1400 0.1498 REMARK 3 3 3.0634 - 2.6762 1.00 4645 143 0.1522 0.1824 REMARK 3 4 2.6762 - 2.4315 1.00 4663 143 0.1412 0.1640 REMARK 3 5 2.4315 - 2.2573 1.00 4623 143 0.1317 0.1402 REMARK 3 6 2.2573 - 2.1242 1.00 4669 144 0.1361 0.1507 REMARK 3 7 2.1242 - 2.0178 1.00 4624 142 0.1342 0.1569 REMARK 3 8 2.0178 - 1.9299 1.00 4609 142 0.1424 0.1741 REMARK 3 9 1.9299 - 1.8557 1.00 4646 143 0.1618 0.2001 REMARK 3 10 1.8557 - 1.7916 1.00 4594 142 0.1827 0.1918 REMARK 3 11 1.7916 - 1.7356 1.00 4645 143 0.1831 0.2033 REMARK 3 12 1.7356 - 1.6860 1.00 4639 142 0.1971 0.2382 REMARK 3 13 1.6860 - 1.6416 1.00 4595 142 0.2067 0.2024 REMARK 3 14 1.6416 - 1.6020 1.00 4577 141 0.2207 0.2333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3580 REMARK 3 ANGLE : 1.051 4850 REMARK 3 CHIRALITY : 0.039 548 REMARK 3 PLANARITY : 0.006 646 REMARK 3 DIHEDRAL : 12.300 1310 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6969 69.6654 11.4421 REMARK 3 T TENSOR REMARK 3 T11: 0.1053 T22: 0.1498 REMARK 3 T33: 0.1262 T12: -0.0142 REMARK 3 T13: -0.0070 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.4943 L22: 2.0297 REMARK 3 L33: 2.2758 L12: 0.8028 REMARK 3 L13: -0.4778 L23: -0.0583 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.0491 S13: -0.0656 REMARK 3 S21: -0.0663 S22: 0.0030 S23: -0.0328 REMARK 3 S31: -0.0089 S32: 0.1850 S33: -0.0147 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.0135 61.6645 16.5360 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.2352 REMARK 3 T33: 0.2666 T12: 0.0126 REMARK 3 T13: 0.0097 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 4.1128 L22: 2.8213 REMARK 3 L33: 5.5456 L12: 0.9059 REMARK 3 L13: -2.4472 L23: -1.5156 REMARK 3 S TENSOR REMARK 3 S11: -0.1962 S12: -0.4151 S13: -0.9046 REMARK 3 S21: 0.0307 S22: -0.1111 S23: -0.2809 REMARK 3 S31: 0.2522 S32: 0.4560 S33: 0.0564 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.6595 69.9600 22.1308 REMARK 3 T TENSOR REMARK 3 T11: 0.1347 T22: 0.1713 REMARK 3 T33: 0.1406 T12: -0.0272 REMARK 3 T13: -0.0240 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 3.0651 L22: 1.3757 REMARK 3 L33: 1.0048 L12: 0.8257 REMARK 3 L13: -0.4862 L23: -0.0525 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: -0.0334 S13: -0.1103 REMARK 3 S21: 0.0723 S22: -0.0486 S23: -0.1421 REMARK 3 S31: -0.0556 S32: 0.0030 S33: -0.0075 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4288 63.5493 14.8339 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.1105 REMARK 3 T33: 0.1364 T12: -0.0057 REMARK 3 T13: -0.0119 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.0050 L22: 1.0521 REMARK 3 L33: 0.8551 L12: 0.7925 REMARK 3 L13: -0.0221 L23: 0.0917 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: 0.0115 S13: -0.0926 REMARK 3 S21: 0.0543 S22: 0.0044 S23: -0.0527 REMARK 3 S31: 0.0389 S32: -0.0107 S33: -0.0071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9778 59.6367 9.1040 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.1253 REMARK 3 T33: 0.1203 T12: -0.0148 REMARK 3 T13: 0.0041 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.7406 L22: 4.0178 REMARK 3 L33: 0.9599 L12: 1.5371 REMARK 3 L13: 0.0314 L23: -0.9011 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: 0.0758 S13: -0.1041 REMARK 3 S21: -0.0510 S22: -0.0453 S23: -0.0875 REMARK 3 S31: 0.0561 S32: 0.0843 S33: -0.0035 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0027 71.9093 6.2372 REMARK 3 T TENSOR REMARK 3 T11: 0.1205 T22: 0.1274 REMARK 3 T33: 0.0941 T12: -0.0184 REMARK 3 T13: 0.0013 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.4046 L22: 1.7865 REMARK 3 L33: 2.0010 L12: 0.7578 REMARK 3 L13: 0.0593 L23: 0.5204 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.1839 S13: -0.0855 REMARK 3 S21: -0.0189 S22: 0.0956 S23: 0.0893 REMARK 3 S31: -0.0215 S32: 0.0439 S33: 0.0061 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0576 64.5855 -2.7801 REMARK 3 T TENSOR REMARK 3 T11: 0.1871 T22: 0.2029 REMARK 3 T33: 0.1218 T12: -0.0109 REMARK 3 T13: -0.0040 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.0249 L22: 0.8106 REMARK 3 L33: 0.3881 L12: 1.2012 REMARK 3 L13: 0.2925 L23: 0.0527 REMARK 3 S TENSOR REMARK 3 S11: -0.0834 S12: 0.4622 S13: -0.1050 REMARK 3 S21: -0.1494 S22: 0.1624 S23: -0.0200 REMARK 3 S31: 0.0819 S32: 0.0177 S33: -0.0254 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6550 53.2928 15.4496 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.1505 REMARK 3 T33: 0.1660 T12: -0.0225 REMARK 3 T13: 0.0336 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.6361 L22: 1.8485 REMARK 3 L33: 2.1584 L12: 0.5257 REMARK 3 L13: 0.4813 L23: 0.1498 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.0700 S13: 0.0654 REMARK 3 S21: 0.0681 S22: -0.0560 S23: 0.1834 REMARK 3 S31: -0.0566 S32: -0.1643 S33: 0.0514 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5203 59.4549 23.6779 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.2343 REMARK 3 T33: 0.3329 T12: 0.0180 REMARK 3 T13: 0.0741 T23: -0.0669 REMARK 3 L TENSOR REMARK 3 L11: 7.2118 L22: 2.1452 REMARK 3 L33: 4.8989 L12: 1.8750 REMARK 3 L13: 3.6380 L23: 1.9274 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: -0.3839 S13: 0.5952 REMARK 3 S21: 0.3756 S22: -0.2113 S23: 0.6279 REMARK 3 S31: -0.0470 S32: -0.5285 S33: 0.0629 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9021 50.1635 25.8456 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.1725 REMARK 3 T33: 0.1607 T12: -0.0383 REMARK 3 T13: 0.0354 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 3.6988 L22: 1.6156 REMARK 3 L33: 0.4869 L12: 1.5252 REMARK 3 L13: -0.5202 L23: 0.2051 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: -0.1300 S13: 0.0588 REMARK 3 S21: 0.2891 S22: -0.1374 S23: 0.1684 REMARK 3 S31: 0.0344 S32: -0.0906 S33: 0.0550 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2897 58.2832 13.4967 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.1187 REMARK 3 T33: 0.1225 T12: -0.0092 REMARK 3 T13: 0.0051 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.7840 L22: 1.2089 REMARK 3 L33: 0.6071 L12: 0.6007 REMARK 3 L13: 0.1055 L23: 0.3351 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.0260 S13: 0.0581 REMARK 3 S21: 0.0632 S22: 0.0055 S23: 0.0591 REMARK 3 S31: 0.0011 S32: -0.0058 S33: 0.0134 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 231 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6792 61.8918 -0.7557 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.2212 REMARK 3 T33: 0.1310 T12: -0.0090 REMARK 3 T13: -0.0335 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 1.8707 L22: 1.2288 REMARK 3 L33: 0.4737 L12: 0.8326 REMARK 3 L13: -0.3199 L23: -0.1256 REMARK 3 S TENSOR REMARK 3 S11: -0.1011 S12: 0.3999 S13: 0.1866 REMARK 3 S21: -0.1446 S22: 0.1226 S23: 0.1467 REMARK 3 S31: -0.0839 S32: -0.0776 S33: -0.0106 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M HEPES REMARK 280 PH 7.5, 25% PEG 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.32250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.46450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.32250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.46450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 319 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 385 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 192 REMARK 465 SER A 193 REMARK 465 ARG A 194 REMARK 465 ILE A 195 REMARK 465 HIS A 196 REMARK 465 GLU A 197 REMARK 465 SER A 198 REMARK 465 GLY A 199 REMARK 465 GLN A 200 REMARK 465 ASN A 201 REMARK 465 ARG A 202 REMARK 465 PRO A 203 REMARK 465 GLU A 204 REMARK 465 ARG A 205 REMARK 465 PHE A 206 REMARK 465 ARG A 207 REMARK 465 ALA A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 GLY A 211 REMARK 465 LEU A 212 REMARK 465 ALA A 213 REMARK 465 GLU A 214 REMARK 465 THR A 215 REMARK 465 GLU A 216 REMARK 465 GLN A 217 REMARK 465 GLN A 218 REMARK 465 LEU A 219 REMARK 465 ALA A 220 REMARK 465 LYS A 221 REMARK 465 ARG A 222 REMARK 465 VAL A 223 REMARK 465 VAL A 224 REMARK 465 ALA A 225 REMARK 465 ASP A 226 REMARK 465 ASN A 227 REMARK 465 TRP A 228 REMARK 465 GLU A 272 REMARK 465 ALA A 273 REMARK 465 ARG A 274 REMARK 465 PRO A 275 REMARK 465 PHE A 276 REMARK 465 ASP A 277 REMARK 465 PHE A 278 REMARK 465 GLY A 279 REMARK 465 ALA A 280 REMARK 465 SER A 281 REMARK 465 LEU A 282 REMARK 465 ALA A 283 REMARK 465 VAL A 284 REMARK 465 PRO A 285 REMARK 465 LYS A 286 REMARK 465 GLU A 287 REMARK 465 GLU A 288 REMARK 465 ALA A 289 REMARK 465 LYS B 192 REMARK 465 SER B 193 REMARK 465 ARG B 194 REMARK 465 ILE B 195 REMARK 465 HIS B 196 REMARK 465 GLU B 197 REMARK 465 SER B 198 REMARK 465 GLY B 199 REMARK 465 GLN B 200 REMARK 465 ASN B 201 REMARK 465 ARG B 202 REMARK 465 PRO B 203 REMARK 465 GLU B 204 REMARK 465 ARG B 205 REMARK 465 PHE B 206 REMARK 465 ARG B 207 REMARK 465 ALA B 208 REMARK 465 GLY B 209 REMARK 465 SER B 210 REMARK 465 GLY B 211 REMARK 465 LEU B 212 REMARK 465 ALA B 213 REMARK 465 GLU B 214 REMARK 465 THR B 215 REMARK 465 GLU B 216 REMARK 465 GLN B 217 REMARK 465 GLN B 218 REMARK 465 LEU B 219 REMARK 465 ALA B 220 REMARK 465 LYS B 221 REMARK 465 ARG B 222 REMARK 465 VAL B 223 REMARK 465 VAL B 224 REMARK 465 ALA B 225 REMARK 465 ASP B 226 REMARK 465 ASN B 227 REMARK 465 TRP B 228 REMARK 465 GLU B 272 REMARK 465 ALA B 273 REMARK 465 ARG B 274 REMARK 465 PRO B 275 REMARK 465 PHE B 276 REMARK 465 ASP B 277 REMARK 465 PHE B 278 REMARK 465 GLY B 279 REMARK 465 ALA B 280 REMARK 465 SER B 281 REMARK 465 LEU B 282 REMARK 465 ALA B 283 REMARK 465 VAL B 284 REMARK 465 PRO B 285 REMARK 465 LYS B 286 REMARK 465 GLU B 287 REMARK 465 GLU B 288 REMARK 465 ALA B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 251 HD1 HIS B 252 1.20 REMARK 500 HE2 HIS A 138 HG1 THR A 184 1.22 REMARK 500 HH22 ARG B 31 O HOH B 302 1.45 REMARK 500 HE22 GLN A 39 O HOH A 301 1.54 REMARK 500 HZ3 LYS B 162 O HOH B 450 1.57 REMARK 500 O HOH A 301 O HOH A 303 1.93 REMARK 500 O HOH A 535 O HOH A 564 1.95 REMARK 500 O HOH B 373 O HOH B 531 1.96 REMARK 500 O HOH A 557 O HOH A 558 1.97 REMARK 500 O HOH B 317 O HOH B 350 1.98 REMARK 500 OE1 GLU A 51 O HOH A 566 1.98 REMARK 500 OD1 ASP A 174 O HOH A 501 2.04 REMARK 500 O HOH A 513 O HOH A 529 2.05 REMARK 500 O HOH A 564 O HOH A 578 2.07 REMARK 500 OE1 GLN A 106 O HOH A 537 2.09 REMARK 500 O HOH B 510 O HOH B 546 2.09 REMARK 500 O HOH A 329 O HOH A 374 2.11 REMARK 500 O GLY A 189 O HOH A 521 2.11 REMARK 500 O HOH A 515 O HOH B 489 2.12 REMARK 500 O HOH A 355 O HOH A 384 2.16 REMARK 500 O HOH A 483 O HOH A 485 2.16 REMARK 500 O HOH A 522 O HOH A 523 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 367 O HOH A 383 2656 1.95 REMARK 500 O HOH B 348 O HOH B 348 2556 2.01 REMARK 500 O HOH A 384 O HOH A 485 2656 2.07 REMARK 500 NH1 ARG B 76 O LYS B 101 4546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 143 -128.38 -103.57 REMARK 500 PRO B 96 31.71 -91.03 REMARK 500 ALA B 143 -128.03 -103.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 535 DISTANCE = 9.17 ANGSTROMS REMARK 525 HOH A 562 DISTANCE = 9.30 ANGSTROMS REMARK 525 HOH A 564 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH A 569 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 578 DISTANCE = 6.18 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y98 RELATED DB: PDB REMARK 900 RELATED ID: 4Y9D RELATED DB: PDB REMARK 900 RELATED ID: 4YA6 RELATED DB: PDB REMARK 900 RELATED ID: 4YAC RELATED DB: PDB REMARK 900 RELATED ID: 4YAG RELATED DB: PDB REMARK 900 RELATED ID: 4YAI RELATED DB: PDB REMARK 900 RELATED ID: 4YAM RELATED DB: PDB REMARK 900 RELATED ID: 4YAN RELATED DB: PDB REMARK 900 RELATED ID: 4YAP RELATED DB: PDB REMARK 900 RELATED ID: 4YAV RELATED DB: PDB DBREF 4YAE A 1 289 UNP C0SUJ9 C0SUJ9_9SPHN 1 289 DBREF 4YAE B 1 289 UNP C0SUJ9 C0SUJ9_9SPHN 1 289 SEQRES 1 A 289 MET ASP ILE ALA GLY THR THR ALA PHE ILE THR GLY GLY SEQRES 2 A 289 ALA SER GLY ILE GLY PHE GLY ILE ALA GLN ARG LEU LEU SEQRES 3 A 289 ALA ASN GLY ALA ARG LEU VAL LEU ALA ASP ILE ARG GLN SEQRES 4 A 289 ASP HIS LEU ASP GLU ALA ARG GLN PHE PHE GLU GLU ARG SEQRES 5 A 289 GLN GLN GLY ARG ASN VAL HIS THR ILE ARG LEU ASP VAL SEQRES 6 A 289 SER ASP ARG ALA GLN MET ALA GLU ALA ALA ARG GLU CYS SEQRES 7 A 289 GLU ALA VAL MET GLY GLY PRO ASP ILE LEU ILE ASN ASN SEQRES 8 A 289 ALA GLY ILE ASP PRO SER GLY PRO PHE LYS ASP ALA THR SEQRES 9 A 289 TYR GLN ASP TRP ASP TYR GLY LEU ALA ILE ASN LEU MET SEQRES 10 A 289 GLY PRO ILE ASN GLY ILE MET ALA PHE THR PRO GLY MET SEQRES 11 A 289 ARG ALA ARG GLY ARG GLY GLY HIS ILE VAL ASN THR ALA SEQRES 12 A 289 SER LEU ALA GLY LEU THR PRO MET PRO SER PHE MET ALA SEQRES 13 A 289 ILE TYR ALA THR ALA LYS ALA ALA VAL ILE THR LEU THR SEQRES 14 A 289 GLU THR ILE ARG ASP SER MET ALA GLU ASP ASN ILE GLY SEQRES 15 A 289 VAL THR VAL LEU MET PRO GLY PRO ILE LYS SER ARG ILE SEQRES 16 A 289 HIS GLU SER GLY GLN ASN ARG PRO GLU ARG PHE ARG ALA SEQRES 17 A 289 GLY SER GLY LEU ALA GLU THR GLU GLN GLN LEU ALA LYS SEQRES 18 A 289 ARG VAL VAL ALA ASP ASN TRP MET GLU PRO THR GLU VAL SEQRES 19 A 289 GLY ASP MET ILE VAL ASP ALA ILE VAL HIS ASN LYS LEU SEQRES 20 A 289 TYR VAL SER THR HIS GLY ASN TRP ARG GLU THR CYS GLU SEQRES 21 A 289 ALA ARG PHE GLN ALA LEU LEU ASP SER MET PRO GLU ALA SEQRES 22 A 289 ARG PRO PHE ASP PHE GLY ALA SER LEU ALA VAL PRO LYS SEQRES 23 A 289 GLU GLU ALA SEQRES 1 B 289 MET ASP ILE ALA GLY THR THR ALA PHE ILE THR GLY GLY SEQRES 2 B 289 ALA SER GLY ILE GLY PHE GLY ILE ALA GLN ARG LEU LEU SEQRES 3 B 289 ALA ASN GLY ALA ARG LEU VAL LEU ALA ASP ILE ARG GLN SEQRES 4 B 289 ASP HIS LEU ASP GLU ALA ARG GLN PHE PHE GLU GLU ARG SEQRES 5 B 289 GLN GLN GLY ARG ASN VAL HIS THR ILE ARG LEU ASP VAL SEQRES 6 B 289 SER ASP ARG ALA GLN MET ALA GLU ALA ALA ARG GLU CYS SEQRES 7 B 289 GLU ALA VAL MET GLY GLY PRO ASP ILE LEU ILE ASN ASN SEQRES 8 B 289 ALA GLY ILE ASP PRO SER GLY PRO PHE LYS ASP ALA THR SEQRES 9 B 289 TYR GLN ASP TRP ASP TYR GLY LEU ALA ILE ASN LEU MET SEQRES 10 B 289 GLY PRO ILE ASN GLY ILE MET ALA PHE THR PRO GLY MET SEQRES 11 B 289 ARG ALA ARG GLY ARG GLY GLY HIS ILE VAL ASN THR ALA SEQRES 12 B 289 SER LEU ALA GLY LEU THR PRO MET PRO SER PHE MET ALA SEQRES 13 B 289 ILE TYR ALA THR ALA LYS ALA ALA VAL ILE THR LEU THR SEQRES 14 B 289 GLU THR ILE ARG ASP SER MET ALA GLU ASP ASN ILE GLY SEQRES 15 B 289 VAL THR VAL LEU MET PRO GLY PRO ILE LYS SER ARG ILE SEQRES 16 B 289 HIS GLU SER GLY GLN ASN ARG PRO GLU ARG PHE ARG ALA SEQRES 17 B 289 GLY SER GLY LEU ALA GLU THR GLU GLN GLN LEU ALA LYS SEQRES 18 B 289 ARG VAL VAL ALA ASP ASN TRP MET GLU PRO THR GLU VAL SEQRES 19 B 289 GLY ASP MET ILE VAL ASP ALA ILE VAL HIS ASN LYS LEU SEQRES 20 B 289 TYR VAL SER THR HIS GLY ASN TRP ARG GLU THR CYS GLU SEQRES 21 B 289 ALA ARG PHE GLN ALA LEU LEU ASP SER MET PRO GLU ALA SEQRES 22 B 289 ARG PRO PHE ASP PHE GLY ALA SER LEU ALA VAL PRO LYS SEQRES 23 B 289 GLU GLU ALA FORMUL 3 HOH *541(H2 O) HELIX 1 AA1 SER A 15 ASN A 28 1 14 HELIX 2 AA2 ARG A 38 ARG A 52 1 15 HELIX 3 AA3 GLN A 54 ARG A 56 5 3 HELIX 4 AA4 ASP A 67 GLY A 83 1 17 HELIX 5 AA5 PRO A 99 ALA A 103 5 5 HELIX 6 AA6 THR A 104 LEU A 116 1 13 HELIX 7 AA7 LEU A 116 GLY A 134 1 19 HELIX 8 AA8 SER A 144 LEU A 148 5 5 HELIX 9 AA9 PRO A 152 PHE A 154 5 3 HELIX 10 AB1 MET A 155 GLU A 178 1 24 HELIX 11 AB2 GLU A 230 ASN A 245 1 16 HELIX 12 AB3 TRP A 255 SER A 269 1 15 HELIX 13 AB4 SER B 15 ASN B 28 1 14 HELIX 14 AB5 ARG B 38 GLU B 51 1 14 HELIX 15 AB6 ARG B 52 GLN B 53 5 2 HELIX 16 AB7 GLN B 54 ARG B 56 5 3 HELIX 17 AB8 ASP B 67 GLY B 83 1 17 HELIX 18 AB9 PRO B 99 ALA B 103 5 5 HELIX 19 AC1 THR B 104 LEU B 116 1 13 HELIX 20 AC2 LEU B 116 GLY B 134 1 19 HELIX 21 AC3 SER B 144 LEU B 148 5 5 HELIX 22 AC4 PRO B 152 PHE B 154 5 3 HELIX 23 AC5 MET B 155 GLU B 178 1 24 HELIX 24 AC6 GLU B 230 ASN B 245 1 16 HELIX 25 AC7 TRP B 255 SER B 269 1 15 SHEET 1 AA1 7 VAL A 58 ARG A 62 0 SHEET 2 AA1 7 ARG A 31 ASP A 36 1 N LEU A 34 O HIS A 59 SHEET 3 AA1 7 THR A 7 THR A 11 1 N ILE A 10 O ALA A 35 SHEET 4 AA1 7 ILE A 87 ASN A 90 1 O ILE A 89 N PHE A 9 SHEET 5 AA1 7 GLY A 137 THR A 142 1 O VAL A 140 N LEU A 88 SHEET 6 AA1 7 ILE A 181 MET A 187 1 O THR A 184 N ASN A 141 SHEET 7 AA1 7 TYR A 248 SER A 250 1 O VAL A 249 N MET A 187 SHEET 1 AA2 7 VAL B 58 ARG B 62 0 SHEET 2 AA2 7 ARG B 31 ASP B 36 1 N LEU B 34 O HIS B 59 SHEET 3 AA2 7 THR B 7 THR B 11 1 N ALA B 8 O ARG B 31 SHEET 4 AA2 7 ILE B 87 ASN B 90 1 O ILE B 89 N PHE B 9 SHEET 5 AA2 7 GLY B 137 THR B 142 1 O VAL B 140 N LEU B 88 SHEET 6 AA2 7 ILE B 181 MET B 187 1 O LEU B 186 N ASN B 141 SHEET 7 AA2 7 TYR B 248 SER B 250 1 O VAL B 249 N MET B 187 CISPEP 1 GLY A 84 PRO A 85 0 7.77 CISPEP 2 GLY B 84 PRO B 85 0 8.11 CRYST1 126.645 74.929 56.283 90.00 104.53 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007896 0.000000 0.002046 0.00000 SCALE2 0.000000 0.013346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018354 0.00000