HEADER OXIDOREDUCTASE 17-FEB-15 4YAG TITLE CRYSTAL STRUCTURE OF LIGL IN COMPLEX WITH NADH FROM SPHINGOBIUM SP. TITLE 2 STRAIN SYK-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C ALPHA-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CALPHA-DEHYDROGENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM SP. SYK-6; SOURCE 3 ORGANISM_TAXID: 627192; SOURCE 4 GENE: LIGL, SLG_33660; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SHORT CHAIN DEHYDROGENASE/REDUCTASE SDR FAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.PEREIRA,R.P.MCANDREW,R.A.HEINS,K.L.SALE,B.A.SIMMONS,P.D.ADAMS REVDAT 4 28-FEB-24 4YAG 1 JRNL REMARK REVDAT 3 01-JUN-16 4YAG 1 JRNL REVDAT 2 16-MAR-16 4YAG 1 JRNL REVDAT 1 09-MAR-16 4YAG 0 JRNL AUTH J.H.PEREIRA,R.A.HEINS,D.L.GALL,R.P.MCANDREW,K.DENG, JRNL AUTH 2 K.C.HOLLAND,T.J.DONOHUE,D.R.NOGUERA,B.A.SIMMONS,K.L.SALE, JRNL AUTH 3 J.RALPH,P.D.ADAMS JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE EARLY AND JRNL TITL 2 LATE ENZYMES IN THE LIGNIN BETA-ARYL ETHER CLEAVAGE PATHWAY JRNL TITL 3 FROM SPHINGOBIUM SP. SYK-6. JRNL REF J.BIOL.CHEM. V. 291 10228 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26940872 JRNL DOI 10.1074/JBC.M115.700427 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 81999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4346 - 4.6079 0.99 2779 120 0.1529 0.1554 REMARK 3 2 4.6079 - 3.6578 1.00 2728 147 0.1161 0.1158 REMARK 3 3 3.6578 - 3.1956 1.00 2736 137 0.1231 0.1419 REMARK 3 4 3.1956 - 2.9034 1.00 2711 136 0.1304 0.1553 REMARK 3 5 2.9034 - 2.6953 1.00 2657 153 0.1282 0.1505 REMARK 3 6 2.6953 - 2.5364 1.00 2733 131 0.1271 0.1546 REMARK 3 7 2.5364 - 2.4094 1.00 2694 153 0.1206 0.1657 REMARK 3 8 2.4094 - 2.3045 1.00 2714 127 0.1157 0.1534 REMARK 3 9 2.3045 - 2.2158 1.00 2692 120 0.1188 0.1373 REMARK 3 10 2.2158 - 2.1394 1.00 2701 136 0.1119 0.1344 REMARK 3 11 2.1394 - 2.0725 1.00 2697 145 0.1119 0.1316 REMARK 3 12 2.0725 - 2.0132 1.00 2678 150 0.1157 0.1262 REMARK 3 13 2.0132 - 1.9602 1.00 2646 157 0.1164 0.1490 REMARK 3 14 1.9602 - 1.9124 1.00 2690 146 0.1242 0.1577 REMARK 3 15 1.9124 - 1.8689 1.00 2702 131 0.1305 0.1486 REMARK 3 16 1.8689 - 1.8291 1.00 2681 145 0.1314 0.1844 REMARK 3 17 1.8291 - 1.7925 1.00 2722 136 0.1413 0.1661 REMARK 3 18 1.7925 - 1.7587 1.00 2645 163 0.1431 0.1780 REMARK 3 19 1.7587 - 1.7273 1.00 2631 172 0.1546 0.1875 REMARK 3 20 1.7273 - 1.6980 1.00 2692 152 0.1585 0.2272 REMARK 3 21 1.6980 - 1.6706 1.00 2694 133 0.1614 0.2117 REMARK 3 22 1.6706 - 1.6449 1.00 2666 134 0.1582 0.1720 REMARK 3 23 1.6449 - 1.6207 1.00 2660 143 0.1662 0.1936 REMARK 3 24 1.6207 - 1.5979 1.00 2700 152 0.1673 0.1915 REMARK 3 25 1.5979 - 1.5763 1.00 2681 131 0.1765 0.2020 REMARK 3 26 1.5763 - 1.5558 1.00 2644 150 0.1877 0.2128 REMARK 3 27 1.5558 - 1.5364 1.00 2724 132 0.2004 0.2462 REMARK 3 28 1.5364 - 1.5179 1.00 2627 147 0.2073 0.2438 REMARK 3 29 1.5179 - 1.5002 0.94 2563 132 0.2267 0.2385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4282 REMARK 3 ANGLE : 1.313 5812 REMARK 3 CHIRALITY : 0.071 644 REMARK 3 PLANARITY : 0.007 766 REMARK 3 DIHEDRAL : 12.671 1584 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 29.0122 60.1402 13.3568 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.0794 REMARK 3 T33: 0.0711 T12: 0.0273 REMARK 3 T13: -0.0077 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.0044 L22: 0.8253 REMARK 3 L33: 0.5544 L12: 0.4982 REMARK 3 L13: -0.0671 L23: -0.1266 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: 0.0124 S13: 0.0102 REMARK 3 S21: 0.0158 S22: -0.0050 S23: 0.0441 REMARK 3 S31: -0.0240 S32: -0.0298 S33: -0.0211 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82006 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M HEPES REMARK 280 PH 7.5, 25% PEG 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.02050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.40800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.02050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.40800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 614 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 272 REMARK 465 ALA A 273 REMARK 465 ARG A 274 REMARK 465 PRO A 275 REMARK 465 PHE A 276 REMARK 465 ASP A 277 REMARK 465 PHE A 278 REMARK 465 GLY A 279 REMARK 465 ALA A 280 REMARK 465 SER A 281 REMARK 465 LEU A 282 REMARK 465 ALA A 283 REMARK 465 VAL A 284 REMARK 465 PRO A 285 REMARK 465 LYS A 286 REMARK 465 GLU A 287 REMARK 465 GLU A 288 REMARK 465 ALA A 289 REMARK 465 GLU B 272 REMARK 465 ALA B 273 REMARK 465 ARG B 274 REMARK 465 PRO B 275 REMARK 465 PHE B 276 REMARK 465 ASP B 277 REMARK 465 PHE B 278 REMARK 465 GLY B 279 REMARK 465 ALA B 280 REMARK 465 SER B 281 REMARK 465 LEU B 282 REMARK 465 ALA B 283 REMARK 465 VAL B 284 REMARK 465 PRO B 285 REMARK 465 LYS B 286 REMARK 465 GLU B 287 REMARK 465 GLU B 288 REMARK 465 ALA B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG B 24 OD1 ASP B 236 1.29 REMARK 500 HH21 ARG A 46 OG1 THR A 60 1.43 REMARK 500 OD1 ASP B 2 O HOH B 886 1.75 REMARK 500 OE2 GLU A 50 O HOH A 601 1.87 REMARK 500 O HOH B 603 O HOH B 640 1.93 REMARK 500 O HOH B 648 O HOH B 670 1.96 REMARK 500 O HOH A 915 O HOH A 916 1.96 REMARK 500 O HOH A 604 O HOH A 615 1.97 REMARK 500 O HOH A 913 O HOH A 921 2.00 REMARK 500 NH2 ARG B 24 O HOH B 601 2.02 REMARK 500 NE ARG B 24 OD1 ASP B 236 2.04 REMARK 500 O HOH A 672 O HOH A 694 2.04 REMARK 500 O HOH B 854 O HOH B 888 2.07 REMARK 500 O HOH A 684 O HOH B 670 2.07 REMARK 500 O HOH A 820 O HOH A 909 2.07 REMARK 500 O HOH B 885 O HOH B 890 2.09 REMARK 500 O HOH B 863 O HOH B 890 2.09 REMARK 500 O HOH B 892 O HOH B 895 2.09 REMARK 500 NH2 ARG A 46 OG1 THR A 60 2.11 REMARK 500 OD2 ASP A 2 O HOH A 602 2.12 REMARK 500 O HOH A 676 O HOH A 694 2.12 REMARK 500 O HOH B 828 O HOH B 867 2.16 REMARK 500 OE1 GLN A 217 O HOH A 827 2.16 REMARK 500 O HOH A 868 O HOH A 882 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 645 O HOH A 694 2656 2.04 REMARK 500 O HOH A 696 O HOH B 642 4556 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 143 -123.33 -98.00 REMARK 500 ALA B 143 -121.99 -98.08 REMARK 500 SER B 193 -169.37 -164.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 880 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 883 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A 910 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 935 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 862 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 882 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 892 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 903 DISTANCE = 6.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y98 RELATED DB: PDB REMARK 900 RELATED ID: 4Y9D RELATED DB: PDB REMARK 900 RELATED ID: 4YA6 RELATED DB: PDB REMARK 900 RELATED ID: 4YAC RELATED DB: PDB REMARK 900 RELATED ID: 4YAE RELATED DB: PDB REMARK 900 RELATED ID: 4YAI RELATED DB: PDB REMARK 900 RELATED ID: 4YAM RELATED DB: PDB REMARK 900 RELATED ID: 4YAN RELATED DB: PDB REMARK 900 RELATED ID: 4YAP RELATED DB: PDB REMARK 900 RELATED ID: 4YAV RELATED DB: PDB DBREF 4YAG A 1 289 UNP C0SUJ9 C0SUJ9_9SPHN 1 289 DBREF 4YAG B 1 289 UNP C0SUJ9 C0SUJ9_9SPHN 1 289 SEQRES 1 A 289 MET ASP ILE ALA GLY THR THR ALA PHE ILE THR GLY GLY SEQRES 2 A 289 ALA SER GLY ILE GLY PHE GLY ILE ALA GLN ARG LEU LEU SEQRES 3 A 289 ALA ASN GLY ALA ARG LEU VAL LEU ALA ASP ILE ARG GLN SEQRES 4 A 289 ASP HIS LEU ASP GLU ALA ARG GLN PHE PHE GLU GLU ARG SEQRES 5 A 289 GLN GLN GLY ARG ASN VAL HIS THR ILE ARG LEU ASP VAL SEQRES 6 A 289 SER ASP ARG ALA GLN MET ALA GLU ALA ALA ARG GLU CYS SEQRES 7 A 289 GLU ALA VAL MET GLY GLY PRO ASP ILE LEU ILE ASN ASN SEQRES 8 A 289 ALA GLY ILE ASP PRO SER GLY PRO PHE LYS ASP ALA THR SEQRES 9 A 289 TYR GLN ASP TRP ASP TYR GLY LEU ALA ILE ASN LEU MET SEQRES 10 A 289 GLY PRO ILE ASN GLY ILE MET ALA PHE THR PRO GLY MET SEQRES 11 A 289 ARG ALA ARG GLY ARG GLY GLY HIS ILE VAL ASN THR ALA SEQRES 12 A 289 SER LEU ALA GLY LEU THR PRO MET PRO SER PHE MET ALA SEQRES 13 A 289 ILE TYR ALA THR ALA LYS ALA ALA VAL ILE THR LEU THR SEQRES 14 A 289 GLU THR ILE ARG ASP SER MET ALA GLU ASP ASN ILE GLY SEQRES 15 A 289 VAL THR VAL LEU MET PRO GLY PRO ILE LYS SER ARG ILE SEQRES 16 A 289 HIS GLU SER GLY GLN ASN ARG PRO GLU ARG PHE ARG ALA SEQRES 17 A 289 GLY SER GLY LEU ALA GLU THR GLU GLN GLN LEU ALA LYS SEQRES 18 A 289 ARG VAL VAL ALA ASP ASN TRP MET GLU PRO THR GLU VAL SEQRES 19 A 289 GLY ASP MET ILE VAL ASP ALA ILE VAL HIS ASN LYS LEU SEQRES 20 A 289 TYR VAL SER THR HIS GLY ASN TRP ARG GLU THR CYS GLU SEQRES 21 A 289 ALA ARG PHE GLN ALA LEU LEU ASP SER MET PRO GLU ALA SEQRES 22 A 289 ARG PRO PHE ASP PHE GLY ALA SER LEU ALA VAL PRO LYS SEQRES 23 A 289 GLU GLU ALA SEQRES 1 B 289 MET ASP ILE ALA GLY THR THR ALA PHE ILE THR GLY GLY SEQRES 2 B 289 ALA SER GLY ILE GLY PHE GLY ILE ALA GLN ARG LEU LEU SEQRES 3 B 289 ALA ASN GLY ALA ARG LEU VAL LEU ALA ASP ILE ARG GLN SEQRES 4 B 289 ASP HIS LEU ASP GLU ALA ARG GLN PHE PHE GLU GLU ARG SEQRES 5 B 289 GLN GLN GLY ARG ASN VAL HIS THR ILE ARG LEU ASP VAL SEQRES 6 B 289 SER ASP ARG ALA GLN MET ALA GLU ALA ALA ARG GLU CYS SEQRES 7 B 289 GLU ALA VAL MET GLY GLY PRO ASP ILE LEU ILE ASN ASN SEQRES 8 B 289 ALA GLY ILE ASP PRO SER GLY PRO PHE LYS ASP ALA THR SEQRES 9 B 289 TYR GLN ASP TRP ASP TYR GLY LEU ALA ILE ASN LEU MET SEQRES 10 B 289 GLY PRO ILE ASN GLY ILE MET ALA PHE THR PRO GLY MET SEQRES 11 B 289 ARG ALA ARG GLY ARG GLY GLY HIS ILE VAL ASN THR ALA SEQRES 12 B 289 SER LEU ALA GLY LEU THR PRO MET PRO SER PHE MET ALA SEQRES 13 B 289 ILE TYR ALA THR ALA LYS ALA ALA VAL ILE THR LEU THR SEQRES 14 B 289 GLU THR ILE ARG ASP SER MET ALA GLU ASP ASN ILE GLY SEQRES 15 B 289 VAL THR VAL LEU MET PRO GLY PRO ILE LYS SER ARG ILE SEQRES 16 B 289 HIS GLU SER GLY GLN ASN ARG PRO GLU ARG PHE ARG ALA SEQRES 17 B 289 GLY SER GLY LEU ALA GLU THR GLU GLN GLN LEU ALA LYS SEQRES 18 B 289 ARG VAL VAL ALA ASP ASN TRP MET GLU PRO THR GLU VAL SEQRES 19 B 289 GLY ASP MET ILE VAL ASP ALA ILE VAL HIS ASN LYS LEU SEQRES 20 B 289 TYR VAL SER THR HIS GLY ASN TRP ARG GLU THR CYS GLU SEQRES 21 B 289 ALA ARG PHE GLN ALA LEU LEU ASP SER MET PRO GLU ALA SEQRES 22 B 289 ARG PRO PHE ASP PHE GLY ALA SER LEU ALA VAL PRO LYS SEQRES 23 B 289 GLU GLU ALA HET NAI A 500 70 HET NAI B 500 70 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN NAI NADH FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 5 HOH *649(H2 O) HELIX 1 AA1 SER A 15 ASN A 28 1 14 HELIX 2 AA2 ARG A 38 ARG A 52 1 15 HELIX 3 AA3 GLN A 54 ARG A 56 5 3 HELIX 4 AA4 ASP A 67 GLY A 83 1 17 HELIX 5 AA5 PRO A 99 ALA A 103 5 5 HELIX 6 AA6 THR A 104 LEU A 116 1 13 HELIX 7 AA7 LEU A 116 GLY A 134 1 19 HELIX 8 AA8 SER A 144 LEU A 148 5 5 HELIX 9 AA9 PRO A 152 PHE A 154 5 3 HELIX 10 AB1 MET A 155 GLU A 178 1 24 HELIX 11 AB2 ARG A 194 HIS A 196 5 3 HELIX 12 AB3 GLU A 197 ARG A 202 1 6 HELIX 13 AB4 PRO A 203 ARG A 207 5 5 HELIX 14 AB5 LEU A 212 ALA A 220 1 9 HELIX 15 AB6 GLU A 230 ASN A 245 1 16 HELIX 16 AB7 TRP A 255 SER A 269 1 15 HELIX 17 AB8 SER B 15 ASN B 28 1 14 HELIX 18 AB9 ARG B 38 ARG B 52 1 15 HELIX 19 AC1 GLN B 53 ARG B 56 5 4 HELIX 20 AC2 ASP B 67 GLY B 83 1 17 HELIX 21 AC3 PRO B 99 ALA B 103 5 5 HELIX 22 AC4 THR B 104 LEU B 116 1 13 HELIX 23 AC5 LEU B 116 GLY B 134 1 19 HELIX 24 AC6 SER B 144 LEU B 148 5 5 HELIX 25 AC7 PRO B 152 PHE B 154 5 3 HELIX 26 AC8 MET B 155 GLU B 178 1 24 HELIX 27 AC9 ARG B 194 HIS B 196 5 3 HELIX 28 AD1 GLU B 197 ARG B 202 1 6 HELIX 29 AD2 PRO B 203 ARG B 207 5 5 HELIX 30 AD3 LEU B 212 ALA B 220 1 9 HELIX 31 AD4 GLU B 230 ASN B 245 1 16 HELIX 32 AD5 TRP B 255 SER B 269 1 15 SHEET 1 AA1 7 VAL A 58 ARG A 62 0 SHEET 2 AA1 7 ARG A 31 ASP A 36 1 N LEU A 34 O ILE A 61 SHEET 3 AA1 7 THR A 7 THR A 11 1 N ILE A 10 O VAL A 33 SHEET 4 AA1 7 ILE A 87 ASN A 90 1 O ILE A 89 N PHE A 9 SHEET 5 AA1 7 GLY A 137 THR A 142 1 O HIS A 138 N LEU A 88 SHEET 6 AA1 7 ILE A 181 MET A 187 1 O LEU A 186 N ASN A 141 SHEET 7 AA1 7 TYR A 248 SER A 250 1 O VAL A 249 N MET A 187 SHEET 1 AA2 7 VAL B 58 ARG B 62 0 SHEET 2 AA2 7 ARG B 31 ASP B 36 1 N LEU B 34 O HIS B 59 SHEET 3 AA2 7 THR B 7 THR B 11 1 N ILE B 10 O VAL B 33 SHEET 4 AA2 7 ILE B 87 ASN B 90 1 O ILE B 89 N PHE B 9 SHEET 5 AA2 7 GLY B 137 THR B 142 1 O HIS B 138 N LEU B 88 SHEET 6 AA2 7 ILE B 181 MET B 187 1 O THR B 184 N ASN B 141 SHEET 7 AA2 7 TYR B 248 SER B 250 1 O VAL B 249 N MET B 187 CISPEP 1 GLY A 84 PRO A 85 0 11.11 CISPEP 2 GLY B 84 PRO B 85 0 10.37 SITE 1 AC1 34 GLY A 12 SER A 15 GLY A 16 ILE A 17 SITE 2 AC1 34 ASP A 36 ILE A 37 ARG A 38 HIS A 41 SITE 3 AC1 34 LEU A 63 ASP A 64 VAL A 65 ASN A 91 SITE 4 AC1 34 ALA A 92 GLY A 93 ILE A 114 THR A 142 SITE 5 AC1 34 ALA A 143 SER A 144 TYR A 158 LYS A 162 SITE 6 AC1 34 PRO A 188 GLY A 189 PRO A 190 ILE A 191 SITE 7 AC1 34 SER A 193 ARG A 194 ILE A 195 ASN A 201 SITE 8 AC1 34 HOH A 709 HOH A 710 HOH A 714 HOH A 716 SITE 9 AC1 34 HOH A 833 HOH A 852 SITE 1 AC2 33 GLY B 12 SER B 15 GLY B 16 ILE B 17 SITE 2 AC2 33 ASP B 36 ILE B 37 ARG B 38 HIS B 41 SITE 3 AC2 33 LEU B 63 ASP B 64 VAL B 65 ASN B 91 SITE 4 AC2 33 ALA B 92 GLY B 93 ILE B 114 THR B 142 SITE 5 AC2 33 ALA B 143 SER B 144 TYR B 158 LYS B 162 SITE 6 AC2 33 PRO B 188 GLY B 189 PRO B 190 ILE B 191 SITE 7 AC2 33 SER B 193 ARG B 194 ILE B 195 HOH B 687 SITE 8 AC2 33 HOH B 697 HOH B 715 HOH B 789 HOH B 832 SITE 9 AC2 33 HOH B 837 CRYST1 126.041 72.816 58.972 90.00 105.36 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007934 0.000000 0.002180 0.00000 SCALE2 0.000000 0.013733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017586 0.00000