HEADER LIGASE 17-FEB-15 4YAK TITLE CA. KORARCHAEUM CRYPTOFILUM DINUCLEOTIDE FORMING ACETYL-COENZYME A TITLE 2 SYNTHETASE 1 IN COMPLEX WITH COENZYME A, ACETYL-COENZYME A AND WITH TITLE 3 PHOSPHORYLATED PHOSPHOHISTIDINE SEGMENT (SITE I ORIENTATION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA SUBUNIT OF ACYL-COA SYNTHETASE (NDP FORMING); COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PHOSPHOHISTIDINE HIS254; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA SUBUNIT OF ACYL-COA SYNTHETASE (NDP FORMING); COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KORARCHAEUM CRYPTOFILUM (STRAIN OPF8); SOURCE 3 ORGANISM_TAXID: 374847; SOURCE 4 STRAIN: OPF8; SOURCE 5 GENE: KCR_0198; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: KORARCHAEUM CRYPTOFILUM (STRAIN OPF8); SOURCE 10 ORGANISM_TAXID: 374847; SOURCE 11 STRAIN: OPF8; SOURCE 12 GENE: KCR_0115; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS DINUCLEOTIDE FORMING ACETYL-COA SYNTHETASE, COMPLEX, ACD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.H.-J.WEISSE,A.J.SCHEIDIG REVDAT 5 10-JAN-24 4YAK 1 REMARK REVDAT 4 07-MAR-18 4YAK 1 REMARK REVDAT 3 10-FEB-16 4YAK 1 JRNL REVDAT 2 03-FEB-16 4YAK 1 JRNL REVDAT 1 27-JAN-16 4YAK 0 JRNL AUTH R.H.WEIE,A.FAUST,M.SCHMIDT,P.SCHONHEIT,A.J.SCHEIDIG JRNL TITL STRUCTURE OF NDP-FORMING ACETYL-COA SYNTHETASE ACD1 REVEALS JRNL TITL 2 A LARGE REARRANGEMENT FOR PHOSPHORYL TRANSFER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E519 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26787904 JRNL DOI 10.1073/PNAS.1518614113 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 53659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 83.6195 - 6.5726 1.00 2949 153 0.1303 0.1785 REMARK 3 2 6.5726 - 5.2171 1.00 2827 145 0.1672 0.2162 REMARK 3 3 5.2171 - 4.5577 1.00 2787 145 0.1405 0.1601 REMARK 3 4 4.5577 - 4.1410 1.00 2758 149 0.1409 0.2082 REMARK 3 5 4.1410 - 3.8442 1.00 2758 146 0.1664 0.2047 REMARK 3 6 3.8442 - 3.6175 1.00 2750 144 0.1725 0.2021 REMARK 3 7 3.6175 - 3.4364 1.00 2715 146 0.1854 0.2689 REMARK 3 8 3.4364 - 3.2868 1.00 2750 150 0.2047 0.2609 REMARK 3 9 3.2868 - 3.1602 1.00 2729 150 0.2241 0.2548 REMARK 3 10 3.1602 - 3.0512 1.00 2714 144 0.2635 0.2891 REMARK 3 11 3.0512 - 2.9558 1.00 2734 135 0.2551 0.3139 REMARK 3 12 2.9558 - 2.8713 1.00 2726 150 0.2632 0.3065 REMARK 3 13 2.8713 - 2.7957 1.00 2699 149 0.2586 0.3306 REMARK 3 14 2.7957 - 2.7275 1.00 2701 156 0.3059 0.3082 REMARK 3 15 2.7275 - 2.6655 1.00 2721 144 0.3375 0.3453 REMARK 3 16 2.6655 - 2.6087 1.00 2737 134 0.3479 0.3865 REMARK 3 17 2.6087 - 2.5565 1.00 2691 152 0.3528 0.3981 REMARK 3 18 2.5565 - 2.5083 1.00 2708 143 0.3863 0.4031 REMARK 3 19 2.5083 - 2.4635 0.55 1484 86 0.4139 0.4204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 10735 REMARK 3 ANGLE : 0.880 14575 REMARK 3 CHIRALITY : 0.036 1675 REMARK 3 PLANARITY : 0.004 1920 REMARK 3 DIHEDRAL : 12.704 4005 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-13; 17-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : 14.1; P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980; 0.976 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; DECTRIS REMARK 200 PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JULY 4, 2012 REMARK 200 DATA SCALING SOFTWARE : XSCALE NOVEMBER 3, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54078 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 83.571 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.22200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 3.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, PHASER REMARK 200 STARTING MODEL: 2CSU AND 1WR2 REMARK 200 REMARK 200 REMARK: ROD-LIKE APPEARANCE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/HCL PH 8.7, 14% (W/V) REMARK 280 PEG6000, 10 MM NA2HPO4, 5 MM NAOAC, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.20500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 VAL D 67 REMARK 465 HIS D 68 REMARK 465 LYS D 69 REMARK 465 SER D 70 REMARK 465 ASP D 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 43 CG CD OE1 OE2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 VAL B 77 CG1 CG2 REMARK 470 LYS B 87 CE NZ REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 LYS C 39 CG CD CE NZ REMARK 470 LYS D 9 CG CD CE NZ REMARK 470 LYS D 11 CG CD CE NZ REMARK 470 GLU D 12 CG CD OE1 OE2 REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 GLU D 83 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS D 97 O PRO D 101 1.42 REMARK 500 O ALA D 46 H SER D 50 1.59 REMARK 500 HD22 ASN A 32 O THR A 143 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 102 -126.76 -118.04 REMARK 500 PRO A 128 -165.77 -78.03 REMARK 500 ALA A 142 53.60 -100.70 REMARK 500 ASP A 189 -80.20 -141.45 REMARK 500 ASN A 348 105.54 71.44 REMARK 500 THR A 353 149.43 73.69 REMARK 500 PHE C 102 -126.30 -119.58 REMARK 500 PRO C 128 -163.36 -76.39 REMARK 500 ALA C 142 53.89 -100.62 REMARK 500 ASP C 189 -81.45 -141.89 REMARK 500 ASN C 348 106.34 69.80 REMARK 500 THR C 353 149.05 72.98 REMARK 500 SER D 42 -167.82 -166.05 REMARK 500 LYS D 60 -145.57 -135.89 REMARK 500 LYS D 76 -169.19 -119.12 REMARK 500 ASN D 78 73.67 41.17 REMARK 500 ALA D 103 149.89 -178.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACO C 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XYM RELATED DB: PDB REMARK 900 RELATED ID: 4XZ3 RELATED DB: PDB REMARK 900 RELATED ID: 4Y8V RELATED DB: PDB REMARK 900 RELATED ID: 4XYL RELATED DB: PDB REMARK 900 RELATED ID: 4YAJ RELATED DB: PDB REMARK 900 RELATED ID: 4YB8 RELATED DB: PDB REMARK 900 RELATED ID: 4YBZ RELATED DB: PDB REMARK 900 RELATED ID: 5HBR RELATED DB: PDB DBREF 4YAK A 1 464 UNP B1L3C9 B1L3C9_KORCO 1 464 DBREF 4YAK B 1 230 UNP B1L7P8 B1L7P8_KORCO 1 230 DBREF 4YAK C 1 464 UNP B1L3C9 B1L3C9_KORCO 1 464 DBREF 4YAK D 1 230 UNP B1L7P8 B1L7P8_KORCO 1 230 SEQRES 1 A 464 MET ASN ASP LEU GLU ARG LEU PHE ASN PRO SER ALA ILE SEQRES 2 A 464 ALA VAL VAL GLY ALA SER LYS ASP PRO SER LYS ILE GLY SEQRES 3 A 464 SER GLN ILE LEU ARG ASN LEU LEU SER TYR GLY PHE LYS SEQRES 4 A 464 GLY LYS VAL TYR PRO ILE ASN PRO THR ALA ASP GLU LEU SEQRES 5 A 464 MET GLY LEU LYS CYS TYR PRO LYS VAL SER ASP VAL PRO SEQRES 6 A 464 ASP LYS VAL ASP VAL ALA VAL ILE SER VAL PRO SER ASP SEQRES 7 A 464 LYS VAL LEU GLY VAL ILE ASP ASP CYS GLY LYS ALA GLY SEQRES 8 A 464 VAL LYS PHE ALA VAL VAL ILE THR SER GLY PHE LYS GLU SEQRES 9 A 464 VAL GLY ASN GLU GLU LEU GLU GLU GLU LEU VAL ARG ARG SEQRES 10 A 464 ALA HIS SER TYR GLY MET ARG VAL LEU GLY PRO ASN ILE SEQRES 11 A 464 PHE GLY TYR LEU TYR ALA PRO ALA ARG LEU ASN ALA THR SEQRES 12 A 464 PHE GLY PRO LYS ASP VAL LEU SER GLY ASN VAL ALA PHE SEQRES 13 A 464 ILE SER GLN SER GLY ALA LEU GLY ILE ALA LEU MET GLY SEQRES 14 A 464 TYR THR VAL VAL GLU ASN ILE GLY ILE SER SER ILE VAL SEQRES 15 A 464 SER VAL GLY ASN LYS ALA ASP LEU ASP ASP VAL ASP LEU SEQRES 16 A 464 LEU ASP PHE PHE ASP LYS ASP PRO ASN THR GLY VAL ILE SEQRES 17 A 464 MET ILE TYR LEU GLU GLY ILE ALA PRO GLY ARG GLY ARG SEQRES 18 A 464 MET PHE ILE ASP VAL ALA SER ARG VAL SER LEU ARG LYS SEQRES 19 A 464 PRO ILE ILE VAL ILE LYS ALA GLY ARG THR GLU VAL GLY SEQRES 20 A 464 ALA ARG ALA ALA ALA SER NEP THR GLY SER ILE ALA GLY SEQRES 21 A 464 SER VAL ALA ILE TYR GLU SER ALA PHE LYS GLN SER GLY SEQRES 22 A 464 ILE LEU MET ALA LYS SER VAL GLU ASP ALA PHE ASP TRP SEQRES 23 A 464 THR LYS ALA LEU SER TRP ASN PRO ILE PRO GLU GLY GLU SEQRES 24 A 464 ARG LEU ILE VAL LEU THR ASN GLY GLY GLY ALA GLY VAL SEQRES 25 A 464 GLN SER THR ASP THR PHE ALA ASP ASN GLY ILE TYR LEU SEQRES 26 A 464 SER LYS PRO PRO GLU SER LEU ILE GLN GLU ILE LYS LYS SEQRES 27 A 464 PHE VAL PRO PRO PHE ALA SER PHE ALA ASN PRO ILE ASP SEQRES 28 A 464 ILE THR GLY MET ALA PRO ASP ASP TRP TYR TYR MET GLY SEQRES 29 A 464 THR LEU ALA ALA LEU LYS ASN PRO ASP VAL ASP ALA LEU SEQRES 30 A 464 THR VAL LEU TYR CYS GLN THR ALA VAL THR THR PRO ILE SEQRES 31 A 464 GLY VAL ALA LYS GLY ILE VAL ASP ALA ILE LYS GLU ALA SEQRES 32 A 464 GLY ASN SER LYS PRO VAL THR VAL GLY MET VAL GLY GLY SEQRES 33 A 464 PRO GLU VAL ALA GLU ALA VAL SER PHE LEU ASN LYS GLN SEQRES 34 A 464 ARG ILE ALA ALA TYR PRO THR PRO GLU ARG ALA SER SER SEQRES 35 A 464 ALA MET SER ALA LEU TYR ALA TYR ALA ARG ALA ARG SER SEQRES 36 A 464 TYR VAL MET LYS SER LEU ALA VAL ARG SEQRES 1 B 230 MET SER SER ARG ASP LEU LEU LEU LYS ALA LYS GLU ASN SEQRES 2 B 230 GLY ARG LYS SER LEU LEU GLU HIS GLU ALA LYS TYR PHE SEQRES 3 B 230 ILE SER SER TYR GLY ILE PRO VAL THR ASN ILE ARG LEU SEQRES 4 B 230 ALA LYS SER GLU GLU GLU ALA VAL ASN PHE SER ARG GLU SEQRES 5 B 230 ILE GLY PHE PRO VAL VAL LEU LYS ILE VAL SER PRO GLN SEQRES 6 B 230 VAL VAL HIS LYS SER ASP VAL GLY GLY VAL LYS VAL ASN SEQRES 7 B 230 LEU ARG SER GLU GLU GLU VAL ARG LYS ALA TYR ARG GLU SEQRES 8 B 230 ILE ILE GLU ASN VAL LYS ARG ASN VAL PRO ASN ALA GLU SEQRES 9 B 230 ILE GLU GLY ILE LEU VAL GLN GLU PHE ALA PRO PRO GLY SEQRES 10 B 230 VAL GLU LEU ILE ILE GLY LEU LEU ARG ASP PRO GLN PHE SEQRES 11 B 230 GLY PRO THR VAL MET PHE GLY LEU GLY GLY VAL PHE VAL SEQRES 12 B 230 GLU LEU PHE ARG ASP VAL SER PHE ARG VAL ALA PRO LEU SEQRES 13 B 230 SER GLU GLN ASP ALA GLU SER MET ILE LYS GLU VAL LYS SEQRES 14 B 230 ALA TYR LYS LEU LEU THR GLY PHE ARG GLY MET GLU PRO SEQRES 15 B 230 VAL ASP ILE GLU ALA ILE LYS ASP ALA LEU ILE ARG ALA SEQRES 16 B 230 GLY ARG ILE GLY VAL GLU ASN GLU GLU ILE ALA GLU MET SEQRES 17 B 230 ASP LEU ASN PRO VAL ILE ALA TYR PRO LYS GLY ILE LYS SEQRES 18 B 230 VAL VAL ASP ALA ARG ILE ILE LEU ARG SEQRES 1 C 464 MET ASN ASP LEU GLU ARG LEU PHE ASN PRO SER ALA ILE SEQRES 2 C 464 ALA VAL VAL GLY ALA SER LYS ASP PRO SER LYS ILE GLY SEQRES 3 C 464 SER GLN ILE LEU ARG ASN LEU LEU SER TYR GLY PHE LYS SEQRES 4 C 464 GLY LYS VAL TYR PRO ILE ASN PRO THR ALA ASP GLU LEU SEQRES 5 C 464 MET GLY LEU LYS CYS TYR PRO LYS VAL SER ASP VAL PRO SEQRES 6 C 464 ASP LYS VAL ASP VAL ALA VAL ILE SER VAL PRO SER ASP SEQRES 7 C 464 LYS VAL LEU GLY VAL ILE ASP ASP CYS GLY LYS ALA GLY SEQRES 8 C 464 VAL LYS PHE ALA VAL VAL ILE THR SER GLY PHE LYS GLU SEQRES 9 C 464 VAL GLY ASN GLU GLU LEU GLU GLU GLU LEU VAL ARG ARG SEQRES 10 C 464 ALA HIS SER TYR GLY MET ARG VAL LEU GLY PRO ASN ILE SEQRES 11 C 464 PHE GLY TYR LEU TYR ALA PRO ALA ARG LEU ASN ALA THR SEQRES 12 C 464 PHE GLY PRO LYS ASP VAL LEU SER GLY ASN VAL ALA PHE SEQRES 13 C 464 ILE SER GLN SER GLY ALA LEU GLY ILE ALA LEU MET GLY SEQRES 14 C 464 TYR THR VAL VAL GLU ASN ILE GLY ILE SER SER ILE VAL SEQRES 15 C 464 SER VAL GLY ASN LYS ALA ASP LEU ASP ASP VAL ASP LEU SEQRES 16 C 464 LEU ASP PHE PHE ASP LYS ASP PRO ASN THR GLY VAL ILE SEQRES 17 C 464 MET ILE TYR LEU GLU GLY ILE ALA PRO GLY ARG GLY ARG SEQRES 18 C 464 MET PHE ILE ASP VAL ALA SER ARG VAL SER LEU ARG LYS SEQRES 19 C 464 PRO ILE ILE VAL ILE LYS ALA GLY ARG THR GLU VAL GLY SEQRES 20 C 464 ALA ARG ALA ALA ALA SER NEP THR GLY SER ILE ALA GLY SEQRES 21 C 464 SER VAL ALA ILE TYR GLU SER ALA PHE LYS GLN SER GLY SEQRES 22 C 464 ILE LEU MET ALA LYS SER VAL GLU ASP ALA PHE ASP TRP SEQRES 23 C 464 THR LYS ALA LEU SER TRP ASN PRO ILE PRO GLU GLY GLU SEQRES 24 C 464 ARG LEU ILE VAL LEU THR ASN GLY GLY GLY ALA GLY VAL SEQRES 25 C 464 GLN SER THR ASP THR PHE ALA ASP ASN GLY ILE TYR LEU SEQRES 26 C 464 SER LYS PRO PRO GLU SER LEU ILE GLN GLU ILE LYS LYS SEQRES 27 C 464 PHE VAL PRO PRO PHE ALA SER PHE ALA ASN PRO ILE ASP SEQRES 28 C 464 ILE THR GLY MET ALA PRO ASP ASP TRP TYR TYR MET GLY SEQRES 29 C 464 THR LEU ALA ALA LEU LYS ASN PRO ASP VAL ASP ALA LEU SEQRES 30 C 464 THR VAL LEU TYR CYS GLN THR ALA VAL THR THR PRO ILE SEQRES 31 C 464 GLY VAL ALA LYS GLY ILE VAL ASP ALA ILE LYS GLU ALA SEQRES 32 C 464 GLY ASN SER LYS PRO VAL THR VAL GLY MET VAL GLY GLY SEQRES 33 C 464 PRO GLU VAL ALA GLU ALA VAL SER PHE LEU ASN LYS GLN SEQRES 34 C 464 ARG ILE ALA ALA TYR PRO THR PRO GLU ARG ALA SER SER SEQRES 35 C 464 ALA MET SER ALA LEU TYR ALA TYR ALA ARG ALA ARG SER SEQRES 36 C 464 TYR VAL MET LYS SER LEU ALA VAL ARG SEQRES 1 D 230 MET SER SER ARG ASP LEU LEU LEU LYS ALA LYS GLU ASN SEQRES 2 D 230 GLY ARG LYS SER LEU LEU GLU HIS GLU ALA LYS TYR PHE SEQRES 3 D 230 ILE SER SER TYR GLY ILE PRO VAL THR ASN ILE ARG LEU SEQRES 4 D 230 ALA LYS SER GLU GLU GLU ALA VAL ASN PHE SER ARG GLU SEQRES 5 D 230 ILE GLY PHE PRO VAL VAL LEU LYS ILE VAL SER PRO GLN SEQRES 6 D 230 VAL VAL HIS LYS SER ASP VAL GLY GLY VAL LYS VAL ASN SEQRES 7 D 230 LEU ARG SER GLU GLU GLU VAL ARG LYS ALA TYR ARG GLU SEQRES 8 D 230 ILE ILE GLU ASN VAL LYS ARG ASN VAL PRO ASN ALA GLU SEQRES 9 D 230 ILE GLU GLY ILE LEU VAL GLN GLU PHE ALA PRO PRO GLY SEQRES 10 D 230 VAL GLU LEU ILE ILE GLY LEU LEU ARG ASP PRO GLN PHE SEQRES 11 D 230 GLY PRO THR VAL MET PHE GLY LEU GLY GLY VAL PHE VAL SEQRES 12 D 230 GLU LEU PHE ARG ASP VAL SER PHE ARG VAL ALA PRO LEU SEQRES 13 D 230 SER GLU GLN ASP ALA GLU SER MET ILE LYS GLU VAL LYS SEQRES 14 D 230 ALA TYR LYS LEU LEU THR GLY PHE ARG GLY MET GLU PRO SEQRES 15 D 230 VAL ASP ILE GLU ALA ILE LYS ASP ALA LEU ILE ARG ALA SEQRES 16 D 230 GLY ARG ILE GLY VAL GLU ASN GLU GLU ILE ALA GLU MET SEQRES 17 D 230 ASP LEU ASN PRO VAL ILE ALA TYR PRO LYS GLY ILE LYS SEQRES 18 D 230 VAL VAL ASP ALA ARG ILE ILE LEU ARG MODRES 4YAK NEP A 254 HIS MODIFIED RESIDUE MODRES 4YAK NEP C 254 HIS MODIFIED RESIDUE HET NEP A 254 19 HET NEP C 254 19 HET COA A 500 80 HET ACO C 500 85 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM COA COENZYME A HETNAM ACO ACETYL COENZYME *A FORMUL 1 NEP 2(C6 H10 N3 O5 P) FORMUL 5 COA C21 H36 N7 O16 P3 S FORMUL 6 ACO C23 H38 N7 O17 P3 S FORMUL 7 HOH *18(H2 O) HELIX 1 AA1 LEU A 4 ASN A 9 1 6 HELIX 2 AA2 LYS A 24 GLY A 37 1 14 HELIX 3 AA3 LYS A 60 VAL A 64 5 5 HELIX 4 AA4 PRO A 76 ALA A 90 1 15 HELIX 5 AA5 PHE A 102 GLY A 106 5 5 HELIX 6 AA6 ASN A 107 TYR A 121 1 15 HELIX 7 AA7 PRO A 137 ARG A 139 5 3 HELIX 8 AA8 GLY A 161 GLU A 174 1 14 HELIX 9 AA9 ASP A 191 ASP A 202 1 12 HELIX 10 AB1 ARG A 219 LEU A 232 1 14 HELIX 11 AB2 THR A 244 GLY A 256 1 13 HELIX 12 AB3 SER A 261 SER A 272 1 12 HELIX 13 AB4 SER A 279 TRP A 292 1 14 HELIX 14 AB5 GLY A 307 ASN A 321 1 15 HELIX 15 AB6 PRO A 329 LYS A 337 1 9 HELIX 16 AB7 PRO A 357 ASN A 371 1 15 HELIX 17 AB8 THR A 388 GLY A 404 1 17 HELIX 18 AB9 GLY A 416 GLN A 429 1 14 HELIX 19 AC1 THR A 436 ALA A 462 1 27 HELIX 20 AC2 SER B 3 ASN B 13 1 11 HELIX 21 AC3 LEU B 19 SER B 29 1 11 HELIX 22 AC4 SER B 42 GLY B 54 1 13 HELIX 23 AC5 SER B 81 VAL B 100 1 20 HELIX 24 AC6 GLY B 140 LEU B 145 1 6 HELIX 25 AC7 SER B 157 VAL B 168 1 12 HELIX 26 AC8 ALA B 170 LEU B 174 5 5 HELIX 27 AC9 ASP B 184 ASN B 202 1 19 HELIX 28 AD1 LEU C 4 ASN C 9 1 6 HELIX 29 AD2 LYS C 24 GLY C 37 1 14 HELIX 30 AD3 LYS C 60 VAL C 64 5 5 HELIX 31 AD4 PRO C 76 ALA C 90 1 15 HELIX 32 AD5 PHE C 102 GLY C 106 5 5 HELIX 33 AD6 ASN C 107 SER C 120 1 14 HELIX 34 AD7 PRO C 137 ARG C 139 5 3 HELIX 35 AD8 GLY C 161 GLU C 174 1 14 HELIX 36 AD9 ASP C 191 ASP C 202 1 12 HELIX 37 AE1 ARG C 219 LEU C 232 1 14 HELIX 38 AE2 THR C 244 GLY C 256 1 13 HELIX 39 AE3 SER C 261 SER C 272 1 12 HELIX 40 AE4 SER C 279 TRP C 292 1 14 HELIX 41 AE5 GLY C 307 ASN C 321 1 15 HELIX 42 AE6 PRO C 329 LYS C 337 1 9 HELIX 43 AE7 PRO C 357 ASN C 371 1 15 HELIX 44 AE8 THR C 388 ALA C 403 1 16 HELIX 45 AE9 GLY C 416 GLN C 429 1 14 HELIX 46 AF1 THR C 436 LEU C 461 1 26 HELIX 47 AF2 ARG D 4 ASN D 13 1 10 HELIX 48 AF3 LEU D 19 SER D 29 1 11 HELIX 49 AF4 SER D 42 GLY D 54 1 13 HELIX 50 AF5 VAL D 85 VAL D 100 1 16 HELIX 51 AF6 GLY D 140 LEU D 145 1 6 HELIX 52 AF7 SER D 157 VAL D 168 1 12 HELIX 53 AF8 ALA D 170 THR D 175 5 6 HELIX 54 AF9 ASP D 184 ASN D 202 1 19 SHEET 1 AA1 5 LYS A 41 ILE A 45 0 SHEET 2 AA1 5 ALA A 12 VAL A 16 1 N ILE A 13 O LYS A 41 SHEET 3 AA1 5 VAL A 70 ILE A 73 1 O VAL A 72 N ALA A 14 SHEET 4 AA1 5 PHE A 94 VAL A 97 1 O VAL A 96 N ALA A 71 SHEET 5 AA1 5 ARG A 124 LEU A 126 1 O ARG A 124 N ALA A 95 SHEET 1 AA2 2 GLU A 51 LEU A 52 0 SHEET 2 AA2 2 LEU A 55 LYS A 56 -1 O LEU A 55 N LEU A 52 SHEET 1 AA3 7 LEU A 140 THR A 143 0 SHEET 2 AA3 7 GLY A 132 TYR A 135 -1 N TYR A 135 O LEU A 140 SHEET 3 AA3 7 ILE A 178 SER A 183 -1 O ILE A 181 N LEU A 134 SHEET 4 AA3 7 SER A 151 SER A 158 1 N VAL A 154 O SER A 179 SHEET 5 AA3 7 VAL A 207 LEU A 212 1 O MET A 209 N ALA A 155 SHEET 6 AA3 7 ILE A 236 LYS A 240 1 O ILE A 239 N ILE A 210 SHEET 7 AA3 7 LEU A 275 ALA A 277 1 O LEU A 275 N VAL A 238 SHEET 1 AA4 5 ILE A 350 ASP A 351 0 SHEET 2 AA4 5 LEU A 301 THR A 305 1 N VAL A 303 O ILE A 350 SHEET 3 AA4 5 ALA A 376 CYS A 382 1 O LEU A 380 N LEU A 304 SHEET 4 AA4 5 VAL A 409 VAL A 414 1 O GLY A 412 N VAL A 379 SHEET 5 AA4 5 ALA A 432 TYR A 434 1 O TYR A 434 N MET A 413 SHEET 1 AA5 4 ILE B 37 ALA B 40 0 SHEET 2 AA5 4 GLY B 107 GLU B 112 -1 O ILE B 108 N ALA B 40 SHEET 3 AA5 4 VAL B 57 VAL B 62 -1 N VAL B 58 O GLN B 111 SHEET 4 AA5 4 VAL B 75 LEU B 79 -1 O LEU B 79 N VAL B 57 SHEET 1 AA6 5 SER B 150 VAL B 153 0 SHEET 2 AA6 5 GLY B 131 LEU B 138 -1 N VAL B 134 O ARG B 152 SHEET 3 AA6 5 VAL B 118 ASP B 127 -1 N LEU B 125 O THR B 133 SHEET 4 AA6 5 ILE B 205 ALA B 215 -1 O VAL B 213 N LEU B 120 SHEET 5 AA6 5 ILE B 220 VAL B 222 -1 O LYS B 221 N ILE B 214 SHEET 1 AA7 5 SER B 150 VAL B 153 0 SHEET 2 AA7 5 GLY B 131 LEU B 138 -1 N VAL B 134 O ARG B 152 SHEET 3 AA7 5 VAL B 118 ASP B 127 -1 N LEU B 125 O THR B 133 SHEET 4 AA7 5 ILE B 205 ALA B 215 -1 O VAL B 213 N LEU B 120 SHEET 5 AA7 5 ALA B 225 LEU B 229 -1 O ARG B 226 N ASP B 209 SHEET 1 AA8 5 LYS C 41 ILE C 45 0 SHEET 2 AA8 5 ALA C 12 VAL C 16 1 N VAL C 15 O ILE C 45 SHEET 3 AA8 5 VAL C 70 ILE C 73 1 O VAL C 72 N ALA C 14 SHEET 4 AA8 5 PHE C 94 VAL C 97 1 O VAL C 96 N ALA C 71 SHEET 5 AA8 5 ARG C 124 LEU C 126 1 O ARG C 124 N ALA C 95 SHEET 1 AA9 2 GLU C 51 LEU C 52 0 SHEET 2 AA9 2 LEU C 55 LYS C 56 -1 O LEU C 55 N LEU C 52 SHEET 1 AB1 7 LEU C 140 THR C 143 0 SHEET 2 AB1 7 GLY C 132 TYR C 135 -1 N TYR C 135 O LEU C 140 SHEET 3 AB1 7 ILE C 178 SER C 183 -1 O ILE C 181 N LEU C 134 SHEET 4 AB1 7 SER C 151 SER C 158 1 N PHE C 156 O VAL C 182 SHEET 5 AB1 7 VAL C 207 LEU C 212 1 O MET C 209 N ALA C 155 SHEET 6 AB1 7 ILE C 236 LYS C 240 1 O ILE C 239 N ILE C 210 SHEET 7 AB1 7 LEU C 275 ALA C 277 1 O ALA C 277 N VAL C 238 SHEET 1 AB2 5 ILE C 350 ASP C 351 0 SHEET 2 AB2 5 LEU C 301 THR C 305 1 N VAL C 303 O ILE C 350 SHEET 3 AB2 5 ALA C 376 CYS C 382 1 O LEU C 380 N LEU C 304 SHEET 4 AB2 5 VAL C 409 VAL C 414 1 O GLY C 412 N VAL C 379 SHEET 5 AB2 5 ALA C 432 TYR C 434 1 O TYR C 434 N MET C 413 SHEET 1 AB3 3 ILE D 37 ALA D 40 0 SHEET 2 AB3 3 ILE D 108 GLU D 112 -1 O ILE D 108 N ALA D 40 SHEET 3 AB3 3 VAL D 57 LEU D 59 -1 N VAL D 58 O GLN D 111 SHEET 1 AB4 5 SER D 150 VAL D 153 0 SHEET 2 AB4 5 GLY D 131 LEU D 138 -1 N VAL D 134 O ARG D 152 SHEET 3 AB4 5 VAL D 118 ASP D 127 -1 N ILE D 121 O GLY D 137 SHEET 4 AB4 5 ILE D 205 ALA D 215 -1 O VAL D 213 N LEU D 120 SHEET 5 AB4 5 ILE D 220 VAL D 222 -1 O LYS D 221 N ILE D 214 SHEET 1 AB5 5 SER D 150 VAL D 153 0 SHEET 2 AB5 5 GLY D 131 LEU D 138 -1 N VAL D 134 O ARG D 152 SHEET 3 AB5 5 VAL D 118 ASP D 127 -1 N ILE D 121 O GLY D 137 SHEET 4 AB5 5 ILE D 205 ALA D 215 -1 O VAL D 213 N LEU D 120 SHEET 5 AB5 5 ALA D 225 LEU D 229 -1 O ARG D 226 N ASP D 209 LINK C SER A 253 N NEP A 254 1555 1555 1.33 LINK C NEP A 254 N THR A 255 1555 1555 1.33 LINK C SER C 253 N NEP C 254 1555 1555 1.33 LINK C NEP C 254 N THR C 255 1555 1555 1.33 CISPEP 1 GLY A 127 PRO A 128 0 2.51 CISPEP 2 ASN A 348 PRO A 349 0 6.39 CISPEP 3 PHE B 55 PRO B 56 0 -0.33 CISPEP 4 ALA B 154 PRO B 155 0 3.02 CISPEP 5 ASN B 211 PRO B 212 0 1.47 CISPEP 6 GLY C 127 PRO C 128 0 0.64 CISPEP 7 ASN C 348 PRO C 349 0 6.05 CISPEP 8 PHE D 55 PRO D 56 0 1.62 CISPEP 9 ALA D 154 PRO D 155 0 3.77 CISPEP 10 ASN D 211 PRO D 212 0 1.00 SITE 1 AC1 11 GLY A 17 SER A 19 LYS A 24 ASN A 46 SITE 2 AC1 11 PRO A 47 PRO A 76 VAL A 83 ILE A 98 SITE 3 AC1 11 SER A 100 ASN A 129 ILE A 130 SITE 1 AC2 13 MET A 355 VAL C 16 GLY C 17 SER C 19 SITE 2 AC2 13 LYS C 24 ASN C 46 PRO C 47 VAL C 75 SITE 3 AC2 13 PRO C 76 ILE C 98 SER C 100 ASN C 129 SITE 4 AC2 13 ILE C 130 CRYST1 106.410 111.690 125.970 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009398 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007938 0.00000