data_4YAZ # _entry.id 4YAZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YAZ pdb_00004yaz 10.2210/pdb4yaz/pdb WWPDB D_1000207120 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 4YB0 unspecified PDB . 4YB1 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YAZ _pdbx_database_status.recvd_initial_deposition_date 2015-02-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ren, A.M.' 1 'Patel, D.J.' 2 'Rajashankar, R.K.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 1 _citation.page_last 12 _citation.title ;Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch. ; _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2015.03.004 _citation.pdbx_database_id_PubMed 25818298 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ren, A.' 1 ? primary 'Wang, X.C.' 2 ? primary 'Kellenberger, C.A.' 3 ? primary 'Rajashankar, K.R.' 4 ? primary 'Jones, R.A.' 5 ? primary 'Hammond, M.C.' 6 ? primary 'Patel, D.J.' 7 ? # _cell.entry_id 4YAZ _cell.length_a 66.623 _cell.length_b 50.517 _cell.length_c 78.657 _cell.angle_alpha 90.00 _cell.angle_beta 90.92 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YAZ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (84-MER)' 27339.254 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 4 non-polymer syn ;2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one ; 674.411 2 ? ? ? ? 5 water nat water 18.015 179 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GUACACGACAAUACUAAACCAUCCGCGAGGAUGGGGCGGAAAGCCUAAGGGUCUCCCUGAGACAGCCGGGCUGCC GAAAUAUC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGUACACGACAAUACUAAACCAUCCGCGAGGAUGGGGCGGAAAGCCUAAGGGUCUCCCUGAGACAGCCGGGCUGCCGAAA UAUC ; _entity_poly.pdbx_strand_id R,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 U n 1 4 A n 1 5 C n 1 6 A n 1 7 C n 1 8 G n 1 9 A n 1 10 C n 1 11 A n 1 12 A n 1 13 U n 1 14 A n 1 15 C n 1 16 U n 1 17 A n 1 18 A n 1 19 A n 1 20 C n 1 21 C n 1 22 A n 1 23 U n 1 24 C n 1 25 C n 1 26 G n 1 27 C n 1 28 G n 1 29 A n 1 30 G n 1 31 G n 1 32 A n 1 33 U n 1 34 G n 1 35 G n 1 36 G n 1 37 G n 1 38 C n 1 39 G n 1 40 G n 1 41 A n 1 42 A n 1 43 A n 1 44 G n 1 45 C n 1 46 C n 1 47 U n 1 48 A n 1 49 A n 1 50 G n 1 51 G n 1 52 G n 1 53 U n 1 54 C n 1 55 U n 1 56 C n 1 57 C n 1 58 C n 1 59 U n 1 60 G n 1 61 A n 1 62 G n 1 63 A n 1 64 C n 1 65 A n 1 66 G n 1 67 C n 1 68 C n 1 69 G n 1 70 G n 1 71 G n 1 72 C n 1 73 U n 1 74 G n 1 75 C n 1 76 C n 1 77 G n 1 78 A n 1 79 A n 1 80 A n 1 81 U n 1 82 A n 1 83 U n 1 84 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 84 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name Geobacter _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 28231 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-Fluc(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.db_code 4YAZ _struct_ref.db_name PDB _struct_ref.details ? _struct_ref.entity_id 1 _struct_ref.id 1 _struct_ref.seq_align ? _struct_ref.seq_dif ? _struct_ref.pdbx_db_accession 4YAZ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_align_end ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YAZ R 1 ? 84 ? 4YAZ 1 ? 84 ? 1 84 2 1 4YAZ A 1 ? 84 ? 4YAZ 1 ? 84 ? 1 84 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4BW non-polymer . ;2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one ; ;3',3' cGAMP; c-GMP-AMP; c[G(3',5')pA(3',5')p] ; 'C20 H24 N10 O13 P2' 674.411 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YAZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Na/K-phosphate, pH 6.2-6.6, 0.2 M NaCl and 40-45% PEG400.' _exptl_crystal_grow.pdbx_pH_range 6.2-6.6 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-07-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4YAZ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 78.3 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 32313 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.6 _reflns.percent_possible_obs 98.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.3 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.16 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4YAZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 29171 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.504 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 81.08 _refine.ls_R_factor_obs 0.2144 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2125 _refine.ls_R_factor_R_free 0.2496 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.09 _refine.ls_number_reflns_R_free 1484 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 3IRW _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.32 _refine.pdbx_overall_phase_error 32.11 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3624 _refine_hist.pdbx_number_atoms_ligand 98 _refine_hist.number_atoms_solvent 179 _refine_hist.number_atoms_total 3901 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 42.504 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 4176 'X-RAY DIFFRACTION' ? f_angle_d 1.202 ? ? 6480 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 21.887 ? ? 2106 'X-RAY DIFFRACTION' ? f_chiral_restr 0.049 ? ? 838 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 172 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.00 2.0642 1400 0.3103 24.00 0.3869 . . 75 . . . . 'X-RAY DIFFRACTION' . 2.0642 2.1380 1642 0.2929 28.00 0.4018 . . 100 . . . . 'X-RAY DIFFRACTION' . 2.1380 2.2236 1871 0.2833 31.00 0.3358 . . 110 . . . . 'X-RAY DIFFRACTION' . 2.2236 2.3248 2086 0.2873 35.00 0.2971 . . 103 . . . . 'X-RAY DIFFRACTION' . 2.3248 2.4473 2401 0.2964 40.00 0.3082 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.4473 2.6006 2720 0.3153 46.00 0.3274 . . 159 . . . . 'X-RAY DIFFRACTION' . 2.6006 2.8014 3010 0.3028 50.00 0.3857 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.8014 3.0832 3022 0.2615 51.00 0.3099 . . 160 . . . . 'X-RAY DIFFRACTION' . 3.0832 3.5292 3095 0.1679 51.00 0.2135 . . 152 . . . . 'X-RAY DIFFRACTION' . 3.5292 4.4456 3093 0.1446 51.00 0.1821 . . 165 . . . . 'X-RAY DIFFRACTION' . 4.4456 42.5137 3347 0.1561 56.00 0.1704 . . 186 . . . . # _struct.entry_id 4YAZ _struct.title ;3',3'-cGAMP riboswitch bound with 3',3'-cGAMP ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YAZ _struct_keywords.text ;riboswitch, 3', 3'-cGAMP, spinach, RNA structure, c-di-GMP, RNA ; _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 3 ? J N N 2 ? K N N 3 ? L N N 4 ? M N N 5 ? N N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? R GTP 1 R G 2 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.595 ? ? metalc1 metalc ? ? A A 19 "O2'" ? ? ? 1_555 I K . K ? ? R A 19 R K 107 1_555 ? ? ? ? ? ? ? 2.617 ? ? metalc2 metalc ? ? A G 44 OP1 ? ? ? 1_555 C MG . MG ? ? R G 44 R MG 101 1_555 ? ? ? ? ? ? ? 1.983 ? ? metalc3 metalc ? ? A C 45 OP2 ? ? ? 1_555 C MG . MG ? ? R C 45 R MG 101 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc4 metalc ? ? A A 48 "O4'" ? ? ? 1_555 G K . K ? ? R A 48 R K 105 1_555 ? ? ? ? ? ? ? 2.841 ? ? metalc5 metalc ? ? A G 51 O6 ? ? ? 1_555 G K . K ? ? R G 51 R K 105 1_555 ? ? ? ? ? ? ? 3.296 ? ? metalc6 metalc ? ? A A 82 OP2 ? ? ? 1_555 E MG . MG ? ? R A 82 R MG 103 1_555 ? ? ? ? ? ? ? 2.207 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? R MG 101 R HOH 216 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? R MG 101 R HOH 232 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? R MG 101 R HOH 259 1_555 ? ? ? ? ? ? ? 2.060 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? R MG 101 R HOH 281 1_555 ? ? ? ? ? ? ? 2.020 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? R MG 102 R HOH 274 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? R MG 102 R HOH 289 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc13 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? R MG 104 R HOH 276 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? R MG 104 R HOH 293 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc15 metalc ? ? G K . K ? ? ? 1_555 M HOH . O ? ? R K 105 R HOH 247 1_555 ? ? ? ? ? ? ? 2.734 ? ? metalc16 metalc ? ? G K . K ? ? ? 1_555 M HOH . O ? ? R K 105 R HOH 248 1_555 ? ? ? ? ? ? ? 3.378 ? ? metalc17 metalc ? ? G K . K ? ? ? 1_555 M HOH . O ? ? R K 105 R HOH 284 1_555 ? ? ? ? ? ? ? 3.093 ? ? metalc18 metalc ? ? I K . K ? ? ? 1_555 B A 18 "O2'" ? ? R K 107 A A 18 1_555 ? ? ? ? ? ? ? 2.975 ? ? metalc19 metalc ? ? I K . K ? ? ? 1_555 N HOH . O ? ? R K 107 A HOH 267 1_555 ? ? ? ? ? ? ? 3.098 ? ? metalc20 metalc ? ? B G 44 OP1 ? ? ? 1_555 J MG . MG ? ? A G 44 A MG 101 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc21 metalc ? ? B C 45 OP2 ? ? ? 1_555 J MG . MG ? ? A C 45 A MG 101 1_555 ? ? ? ? ? ? ? 2.371 ? ? hydrog1 hydrog ? ? B GTP 1 N1 ? ? ? 1_555 B C 84 N3 ? ? A GTP 1 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B GTP 1 N2 ? ? ? 1_555 B C 84 O2 ? ? A GTP 1 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B GTP 1 O6 ? ? ? 1_555 B C 84 N4 ? ? A GTP 1 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B U 83 O2 ? ? A G 2 A U 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? B G 2 O6 ? ? ? 1_555 B U 83 N3 ? ? A G 2 A U 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 82 N1 ? ? A U 3 A A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 82 N6 ? ? A U 3 A A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 81 N3 ? ? A A 4 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 81 O4 ? ? A A 4 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B C 7 N3 ? ? ? 1_555 B G 77 N1 ? ? A C 7 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B C 7 N4 ? ? ? 1_555 B G 77 O6 ? ? A C 7 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B C 7 O2 ? ? ? 1_555 B G 77 N2 ? ? A C 7 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 7 O2 ? ? ? 1_555 B A 79 N6 ? ? A C 7 A A 79 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog14 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 76 N3 ? ? A G 8 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 76 O2 ? ? A G 8 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 76 N4 ? ? A G 8 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B A 11 N6 ? ? ? 1_555 B C 76 O2 ? ? A A 11 A C 76 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog18 hydrog ? ? B U 13 O4 ? ? ? 1_555 B A 41 N6 ? ? A U 13 A A 41 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog19 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 40 N1 ? ? A C 15 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 40 O6 ? ? A C 15 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 40 N2 ? ? A C 15 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B U 16 N3 ? ? ? 1_555 B G 39 O6 ? ? A U 16 A G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? B U 16 O2 ? ? ? 1_555 B G 39 N1 ? ? A U 16 A G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? B A 17 N3 ? ? ? 1_555 B C 38 N4 ? ? A A 17 A C 38 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog25 hydrog ? ? B A 19 N6 ? ? ? 1_555 B G 36 N3 ? ? A A 19 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog26 hydrog ? ? B A 19 N7 ? ? ? 1_555 B G 36 N2 ? ? A A 19 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog27 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 35 N1 ? ? A C 20 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 35 O6 ? ? A C 20 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 35 N2 ? ? A C 20 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 21 N3 ? ? ? 1_555 B G 34 N1 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 21 N4 ? ? ? 1_555 B G 34 O6 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 21 O2 ? ? ? 1_555 B G 34 N2 ? ? A C 21 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B A 22 N1 ? ? ? 1_555 B U 33 N3 ? ? A A 22 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B A 22 N6 ? ? ? 1_555 B U 33 O4 ? ? A A 22 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B U 23 N3 ? ? ? 1_555 B A 32 N1 ? ? A U 23 A A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B U 23 O4 ? ? ? 1_555 B A 32 N6 ? ? A U 23 A A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 24 N3 ? ? ? 1_555 B G 31 N1 ? ? A C 24 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 24 N4 ? ? ? 1_555 B G 31 O6 ? ? A C 24 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 24 O2 ? ? ? 1_555 B G 31 N2 ? ? A C 24 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 25 N3 ? ? ? 1_555 B G 30 N1 ? ? A C 25 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B C 25 N4 ? ? ? 1_555 B G 30 O6 ? ? A C 25 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B C 25 O2 ? ? ? 1_555 B G 30 N2 ? ? A C 25 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 26 N2 ? ? ? 1_555 B A 29 N7 ? ? A G 26 A A 29 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog44 hydrog ? ? B G 28 N2 ? ? ? 1_555 B U 55 O2 ? ? A G 28 A U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog45 hydrog ? ? B A 29 N3 ? ? ? 1_555 B G 62 N2 ? ? A A 29 A G 62 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog46 hydrog ? ? B C 38 N3 ? ? ? 1_555 B G 66 N1 ? ? A C 38 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 38 N4 ? ? ? 1_555 B G 66 O6 ? ? A C 38 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B C 38 O2 ? ? ? 1_555 B G 66 N2 ? ? A C 38 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 39 N2 ? ? ? 1_555 B A 43 N3 ? ? A G 39 A A 43 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog50 hydrog ? ? B A 42 N6 ? ? ? 1_555 B U 73 O2 ? ? A A 42 A U 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog51 hydrog ? ? B A 42 N7 ? ? ? 1_555 B U 73 N3 ? ? A A 42 A U 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog52 hydrog ? ? B G 44 N1 ? ? ? 1_555 B C 72 N3 ? ? A G 44 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 44 N2 ? ? ? 1_555 B C 72 O2 ? ? A G 44 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 44 O6 ? ? ? 1_555 B C 72 N4 ? ? A G 44 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 45 N3 ? ? ? 1_555 B G 71 N1 ? ? A C 45 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 45 N4 ? ? ? 1_555 B G 71 O6 ? ? A C 45 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 45 O2 ? ? ? 1_555 B G 71 N2 ? ? A C 45 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 46 N3 ? ? ? 1_555 B G 70 N1 ? ? A C 46 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 46 N4 ? ? ? 1_555 B G 70 O6 ? ? A C 46 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 46 O2 ? ? ? 1_555 B G 70 N2 ? ? A C 46 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B U 47 N3 ? ? ? 1_555 B G 69 O6 ? ? A U 47 A G 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog62 hydrog ? ? B U 47 O2 ? ? ? 1_555 B G 69 N1 ? ? A U 47 A G 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog63 hydrog ? ? B A 48 N1 ? ? ? 1_555 B C 67 N4 ? ? A A 48 A C 67 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog64 hydrog ? ? B G 50 N1 ? ? ? 1_555 B C 68 N3 ? ? A G 50 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 50 N2 ? ? ? 1_555 B C 68 O2 ? ? A G 50 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 50 O6 ? ? ? 1_555 B C 68 N4 ? ? A G 50 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 51 N1 ? ? ? 1_555 B C 67 N3 ? ? A G 51 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 51 N2 ? ? ? 1_555 B C 67 O2 ? ? A G 51 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 51 O6 ? ? ? 1_555 B C 67 N4 ? ? A G 51 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 52 N1 ? ? ? 1_555 B C 64 N3 ? ? A G 52 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 52 N2 ? ? ? 1_555 B C 64 O2 ? ? A G 52 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B G 52 O6 ? ? ? 1_555 B C 64 N4 ? ? A G 52 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B U 53 N3 ? ? ? 1_555 B A 63 N1 ? ? A U 53 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B U 53 O4 ? ? ? 1_555 B A 63 N6 ? ? A U 53 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B C 54 N3 ? ? ? 1_555 B G 62 N1 ? ? A C 54 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 54 N4 ? ? ? 1_555 B G 62 O6 ? ? A C 54 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 54 O2 ? ? ? 1_555 B G 62 N2 ? ? A C 54 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B U 55 N3 ? ? ? 1_555 B A 61 N1 ? ? A U 55 A A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B U 55 O4 ? ? ? 1_555 B A 61 N6 ? ? A U 55 A A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 56 N3 ? ? ? 1_555 B G 60 N1 ? ? A C 56 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 56 N4 ? ? ? 1_555 B G 60 O6 ? ? A C 56 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B C 56 O2 ? ? ? 1_555 B G 60 N2 ? ? A C 56 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B A 65 N3 ? ? ? 1_555 B C 68 N4 ? ? A A 65 A C 68 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog84 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 84 N3 ? ? R GTP 1 R C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A C 84 O2 ? ? R GTP 1 R C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A C 84 N4 ? ? R GTP 1 R C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 83 O2 ? ? R G 2 R U 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog88 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 83 N3 ? ? R G 2 R U 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog89 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 82 N1 ? ? R U 3 R A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 82 N6 ? ? R U 3 R A 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 81 N3 ? ? R A 4 R U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 81 O4 ? ? R A 4 R U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A A 6 N1 ? ? ? 1_555 A A 80 N6 ? ? R A 6 R A 80 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog94 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 77 N1 ? ? R C 7 R G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 77 O6 ? ? R C 7 R G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 77 N2 ? ? R C 7 R G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A C 7 O2 ? ? ? 1_555 A A 79 N6 ? ? R C 7 R A 79 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog98 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 76 N3 ? ? R G 8 R C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 76 O2 ? ? R G 8 R C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 76 N4 ? ? R G 8 R C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A A 11 N6 ? ? ? 1_555 A C 76 O2 ? ? R A 11 R C 76 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog102 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 41 N6 ? ? R U 13 R A 41 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog103 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 40 N1 ? ? R C 15 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 40 O6 ? ? R C 15 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 40 N2 ? ? R C 15 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 39 O6 ? ? R U 16 R G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog107 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 39 N1 ? ? R U 16 R G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog108 hydrog ? ? A A 17 N3 ? ? ? 1_555 A C 38 N4 ? ? R A 17 R C 38 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog109 hydrog ? ? A A 19 N6 ? ? ? 1_555 A G 36 N3 ? ? R A 19 R G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog110 hydrog ? ? A A 19 N7 ? ? ? 1_555 A G 36 N2 ? ? R A 19 R G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog111 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 35 N1 ? ? R C 20 R G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 35 O6 ? ? R C 20 R G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 35 N2 ? ? R C 20 R G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 34 N1 ? ? R C 21 R G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 34 O6 ? ? R C 21 R G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 34 N2 ? ? R C 21 R G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A A 22 N1 ? ? ? 1_555 A U 33 N3 ? ? R A 22 R U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A A 22 N6 ? ? ? 1_555 A U 33 O4 ? ? R A 22 R U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 32 N1 ? ? R U 23 R A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 32 N6 ? ? R U 23 R A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 31 N1 ? ? R C 24 R G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 31 O6 ? ? R C 24 R G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 31 N2 ? ? R C 24 R G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 30 N1 ? ? R C 25 R G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 30 O6 ? ? R C 25 R G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 30 N2 ? ? R C 25 R G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 29 N7 ? ? R G 26 R A 29 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog128 hydrog ? ? A G 28 N2 ? ? ? 1_555 A U 55 O2 ? ? R G 28 R U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog129 hydrog ? ? A A 29 N3 ? ? ? 1_555 A G 62 N2 ? ? R A 29 R G 62 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog130 hydrog ? ? A C 38 N3 ? ? ? 1_555 A G 66 N1 ? ? R C 38 R G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? A C 38 N4 ? ? ? 1_555 A G 66 O6 ? ? R C 38 R G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? A C 38 O2 ? ? ? 1_555 A G 66 N2 ? ? R C 38 R G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? A G 39 N2 ? ? ? 1_555 A A 43 N3 ? ? R G 39 R A 43 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog134 hydrog ? ? A A 42 N6 ? ? ? 1_555 A U 73 O2 ? ? R A 42 R U 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog135 hydrog ? ? A A 42 N7 ? ? ? 1_555 A U 73 N3 ? ? R A 42 R U 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog136 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 72 N3 ? ? R G 44 R C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 72 O2 ? ? R G 44 R C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 72 N4 ? ? R G 44 R C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? A C 45 N3 ? ? ? 1_555 A G 71 N1 ? ? R C 45 R G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? A C 45 N4 ? ? ? 1_555 A G 71 O6 ? ? R C 45 R G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? A C 45 O2 ? ? ? 1_555 A G 71 N2 ? ? R C 45 R G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? A C 46 N3 ? ? ? 1_555 A G 70 N1 ? ? R C 46 R G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 70 O6 ? ? R C 46 R G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? A C 46 O2 ? ? ? 1_555 A G 70 N2 ? ? R C 46 R G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? A U 47 N3 ? ? ? 1_555 A G 69 O6 ? ? R U 47 R G 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog146 hydrog ? ? A U 47 O2 ? ? ? 1_555 A G 69 N1 ? ? R U 47 R G 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog147 hydrog ? ? A A 48 N1 ? ? ? 1_555 A C 67 N4 ? ? R A 48 R C 67 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog148 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 68 N3 ? ? R G 50 R C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 68 O2 ? ? R G 50 R C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 68 N4 ? ? R G 50 R C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 67 N3 ? ? R G 51 R C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 67 O2 ? ? R G 51 R C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 67 N4 ? ? R G 51 R C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 64 N3 ? ? R G 52 R C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 64 O2 ? ? R G 52 R C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 64 N4 ? ? R G 52 R C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? A U 53 N3 ? ? ? 1_555 A A 63 N1 ? ? R U 53 R A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? A U 53 O4 ? ? ? 1_555 A A 63 N6 ? ? R U 53 R A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? A C 54 N3 ? ? ? 1_555 A G 62 N1 ? ? R C 54 R G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog160 hydrog ? ? A C 54 N4 ? ? ? 1_555 A G 62 O6 ? ? R C 54 R G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog161 hydrog ? ? A C 54 O2 ? ? ? 1_555 A G 62 N2 ? ? R C 54 R G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog162 hydrog ? ? A U 55 N3 ? ? ? 1_555 A A 61 N1 ? ? R U 55 R A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog163 hydrog ? ? A U 55 O4 ? ? ? 1_555 A A 61 N6 ? ? R U 55 R A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog164 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 60 N1 ? ? R C 56 R G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog165 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 60 O6 ? ? R C 56 R G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog166 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 60 N2 ? ? R C 56 R G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog167 hydrog ? ? A A 65 N3 ? ? ? 1_555 A C 68 N4 ? ? R A 65 R C 68 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software R MG 101 ? 6 'binding site for residue MG R 101' AC2 Software R MG 102 ? 3 'binding site for residue MG R 102' AC3 Software R MG 103 ? 2 'binding site for residue MG R 103' AC4 Software R MG 104 ? 2 'binding site for residue MG R 104' AC5 Software R K 105 ? 4 'binding site for residue K R 105' AC6 Software R 4BW 106 ? 11 'binding site for residue 4BW R 106' AC7 Software R K 107 ? 4 'binding site for residue K R 107' AC8 Software A MG 101 ? 3 'binding site for residue MG A 101' AC9 Software A K 102 ? 1 'binding site for residue K A 102' AD1 Software A 4BW 103 ? 11 'binding site for residue 4BW A 103' AD2 Software A GTP 1 ? 7 'binding site for Di-nucleotide GTP A 1 and G A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 G A 44 ? G R 44 . ? 1_555 ? 2 AC1 6 C A 45 ? C R 45 . ? 1_555 ? 3 AC1 6 HOH M . ? HOH R 216 . ? 1_555 ? 4 AC1 6 HOH M . ? HOH R 232 . ? 1_555 ? 5 AC1 6 HOH M . ? HOH R 259 . ? 1_555 ? 6 AC1 6 HOH M . ? HOH R 281 . ? 1_555 ? 7 AC2 3 G A 51 ? G R 51 . ? 1_555 ? 8 AC2 3 HOH M . ? HOH R 274 . ? 1_555 ? 9 AC2 3 HOH M . ? HOH R 289 . ? 1_555 ? 10 AC3 2 U A 81 ? U R 81 . ? 1_555 ? 11 AC3 2 A A 82 ? A R 82 . ? 1_555 ? 12 AC4 2 HOH M . ? HOH R 276 . ? 1_555 ? 13 AC4 2 HOH M . ? HOH R 293 . ? 1_555 ? 14 AC5 4 A A 48 ? A R 48 . ? 1_555 ? 15 AC5 4 G A 51 ? G R 51 . ? 1_555 ? 16 AC5 4 HOH M . ? HOH R 247 . ? 1_555 ? 17 AC5 4 HOH M . ? HOH R 284 . ? 1_555 ? 18 AC6 11 G A 8 ? G R 8 . ? 1_555 ? 19 AC6 11 A A 11 ? A R 11 . ? 1_555 ? 20 AC6 11 A A 12 ? A R 12 . ? 1_555 ? 21 AC6 11 A A 14 ? A R 14 . ? 1_555 ? 22 AC6 11 G A 40 ? G R 40 . ? 1_555 ? 23 AC6 11 A A 41 ? A R 41 . ? 1_555 ? 24 AC6 11 A A 42 ? A R 42 . ? 1_555 ? 25 AC6 11 C A 75 ? C R 75 . ? 1_555 ? 26 AC6 11 C A 76 ? C R 76 . ? 1_555 ? 27 AC6 11 HOH M . ? HOH R 228 . ? 1_555 ? 28 AC6 11 HOH M . ? HOH R 239 . ? 1_555 ? 29 AC7 4 A B 18 ? A A 18 . ? 1_555 ? 30 AC7 4 A B 19 ? A A 19 . ? 1_555 ? 31 AC7 4 HOH N . ? HOH A 267 . ? 1_555 ? 32 AC7 4 A A 19 ? A R 19 . ? 1_555 ? 33 AC8 3 U B 16 ? U A 16 . ? 1_555 ? 34 AC8 3 G B 44 ? G A 44 . ? 1_555 ? 35 AC8 3 C B 45 ? C A 45 . ? 1_555 ? 36 AC9 1 C B 58 ? C A 58 . ? 1_555 ? 37 AD1 11 G B 8 ? G A 8 . ? 1_555 ? 38 AD1 11 A B 11 ? A A 11 . ? 1_555 ? 39 AD1 11 A B 12 ? A A 12 . ? 1_555 ? 40 AD1 11 A B 14 ? A A 14 . ? 1_555 ? 41 AD1 11 G B 40 ? G A 40 . ? 1_555 ? 42 AD1 11 A B 41 ? A A 41 . ? 1_555 ? 43 AD1 11 C B 75 ? C A 75 . ? 1_555 ? 44 AD1 11 C B 76 ? C A 76 . ? 1_555 ? 45 AD1 11 HOH N . ? HOH A 225 . ? 1_555 ? 46 AD1 11 HOH N . ? HOH A 233 . ? 1_555 ? 47 AD1 11 HOH N . ? HOH A 260 . ? 1_555 ? 48 AD2 7 U B 3 ? U A 3 . ? 1_555 ? 49 AD2 7 A B 82 ? A A 82 . ? 1_555 ? 50 AD2 7 U B 83 ? U A 83 . ? 1_555 ? 51 AD2 7 C B 84 ? C A 84 . ? 1_555 ? 52 AD2 7 HOH N . ? HOH A 211 . ? 1_555 ? 53 AD2 7 HOH N . ? HOH A 248 . ? 1_555 ? 54 AD2 7 HOH N . ? HOH A 252 . ? 1_555 ? # _atom_sites.entry_id 4YAZ _atom_sites.fract_transf_matrix[1][1] 0.015010 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000240 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019795 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012715 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP R . n A 1 2 G 2 2 2 G G R . n A 1 3 U 3 3 3 U U R . n A 1 4 A 4 4 4 A A R . n A 1 5 C 5 5 5 C C R . n A 1 6 A 6 6 6 A A R . n A 1 7 C 7 7 7 C C R . n A 1 8 G 8 8 8 G G R . n A 1 9 A 9 9 9 A A R . n A 1 10 C 10 10 10 C C R . n A 1 11 A 11 11 11 A A R . n A 1 12 A 12 12 12 A A R . n A 1 13 U 13 13 13 U U R . n A 1 14 A 14 14 14 A A R . n A 1 15 C 15 15 15 C C R . n A 1 16 U 16 16 16 U U R . n A 1 17 A 17 17 17 A A R . n A 1 18 A 18 18 18 A A R . n A 1 19 A 19 19 19 A A R . n A 1 20 C 20 20 20 C C R . n A 1 21 C 21 21 21 C C R . n A 1 22 A 22 22 22 A A R . n A 1 23 U 23 23 23 U U R . n A 1 24 C 24 24 24 C C R . n A 1 25 C 25 25 25 C C R . n A 1 26 G 26 26 26 G G R . n A 1 27 C 27 27 27 C C R . n A 1 28 G 28 28 28 G G R . n A 1 29 A 29 29 29 A A R . n A 1 30 G 30 30 30 G G R . n A 1 31 G 31 31 31 G G R . n A 1 32 A 32 32 32 A A R . n A 1 33 U 33 33 33 U U R . n A 1 34 G 34 34 34 G G R . n A 1 35 G 35 35 35 G G R . n A 1 36 G 36 36 36 G G R . n A 1 37 G 37 37 37 G G R . n A 1 38 C 38 38 38 C C R . n A 1 39 G 39 39 39 G G R . n A 1 40 G 40 40 40 G G R . n A 1 41 A 41 41 41 A A R . n A 1 42 A 42 42 42 A A R . n A 1 43 A 43 43 43 A A R . n A 1 44 G 44 44 44 G G R . n A 1 45 C 45 45 45 C C R . n A 1 46 C 46 46 46 C C R . n A 1 47 U 47 47 47 U U R . n A 1 48 A 48 48 48 A A R . n A 1 49 A 49 49 49 A A R . n A 1 50 G 50 50 50 G G R . n A 1 51 G 51 51 51 G G R . n A 1 52 G 52 52 52 G G R . n A 1 53 U 53 53 53 U U R . n A 1 54 C 54 54 54 C C R . n A 1 55 U 55 55 55 U U R . n A 1 56 C 56 56 56 C C R . n A 1 57 C 57 57 57 C C R . n A 1 58 C 58 58 58 C C R . n A 1 59 U 59 59 59 U U R . n A 1 60 G 60 60 60 G G R . n A 1 61 A 61 61 61 A A R . n A 1 62 G 62 62 62 G G R . n A 1 63 A 63 63 63 A A R . n A 1 64 C 64 64 64 C C R . n A 1 65 A 65 65 65 A A R . n A 1 66 G 66 66 66 G G R . n A 1 67 C 67 67 67 C C R . n A 1 68 C 68 68 68 C C R . n A 1 69 G 69 69 69 G G R . n A 1 70 G 70 70 70 G G R . n A 1 71 G 71 71 71 G G R . n A 1 72 C 72 72 72 C C R . n A 1 73 U 73 73 73 U U R . n A 1 74 G 74 74 74 G G R . n A 1 75 C 75 75 75 C C R . n A 1 76 C 76 76 76 C C R . n A 1 77 G 77 77 77 G G R . n A 1 78 A 78 78 78 A A R . n A 1 79 A 79 79 79 A A R . n A 1 80 A 80 80 80 A A R . n A 1 81 U 81 81 81 U U R . n A 1 82 A 82 82 82 A A R . n A 1 83 U 83 83 83 U U R . n A 1 84 C 84 84 84 C C R . n B 1 1 GTP 1 1 1 GTP GTP A . n B 1 2 G 2 2 2 G G A . n B 1 3 U 3 3 3 U U A . n B 1 4 A 4 4 4 A A A . n B 1 5 C 5 5 5 C C A . n B 1 6 A 6 6 6 A A A . n B 1 7 C 7 7 7 C C A . n B 1 8 G 8 8 8 G G A . n B 1 9 A 9 9 9 A A A . n B 1 10 C 10 10 10 C C A . n B 1 11 A 11 11 11 A A A . n B 1 12 A 12 12 12 A A A . n B 1 13 U 13 13 13 U U A . n B 1 14 A 14 14 14 A A A . n B 1 15 C 15 15 15 C C A . n B 1 16 U 16 16 16 U U A . n B 1 17 A 17 17 17 A A A . n B 1 18 A 18 18 18 A A A . n B 1 19 A 19 19 19 A A A . n B 1 20 C 20 20 20 C C A . n B 1 21 C 21 21 21 C C A . n B 1 22 A 22 22 22 A A A . n B 1 23 U 23 23 23 U U A . n B 1 24 C 24 24 24 C C A . n B 1 25 C 25 25 25 C C A . n B 1 26 G 26 26 26 G G A . n B 1 27 C 27 27 27 C C A . n B 1 28 G 28 28 28 G G A . n B 1 29 A 29 29 29 A A A . n B 1 30 G 30 30 30 G G A . n B 1 31 G 31 31 31 G G A . n B 1 32 A 32 32 32 A A A . n B 1 33 U 33 33 33 U U A . n B 1 34 G 34 34 34 G G A . n B 1 35 G 35 35 35 G G A . n B 1 36 G 36 36 36 G G A . n B 1 37 G 37 37 37 G G A . n B 1 38 C 38 38 38 C C A . n B 1 39 G 39 39 39 G G A . n B 1 40 G 40 40 40 G G A . n B 1 41 A 41 41 41 A A A . n B 1 42 A 42 42 42 A A A . n B 1 43 A 43 43 43 A A A . n B 1 44 G 44 44 44 G G A . n B 1 45 C 45 45 45 C C A . n B 1 46 C 46 46 46 C C A . n B 1 47 U 47 47 47 U U A . n B 1 48 A 48 48 48 A A A . n B 1 49 A 49 49 49 A A A . n B 1 50 G 50 50 50 G G A . n B 1 51 G 51 51 51 G G A . n B 1 52 G 52 52 52 G G A . n B 1 53 U 53 53 53 U U A . n B 1 54 C 54 54 54 C C A . n B 1 55 U 55 55 55 U U A . n B 1 56 C 56 56 56 C C A . n B 1 57 C 57 57 57 C C A . n B 1 58 C 58 58 58 C C A . n B 1 59 U 59 59 59 U U A . n B 1 60 G 60 60 60 G G A . n B 1 61 A 61 61 61 A A A . n B 1 62 G 62 62 62 G G A . n B 1 63 A 63 63 63 A A A . n B 1 64 C 64 64 64 C C A . n B 1 65 A 65 65 65 A A A . n B 1 66 G 66 66 66 G G A . n B 1 67 C 67 67 67 C C A . n B 1 68 C 68 68 68 C C A . n B 1 69 G 69 69 69 G G A . n B 1 70 G 70 70 70 G G A . n B 1 71 G 71 71 71 G G A . n B 1 72 C 72 72 72 C C A . n B 1 73 U 73 73 73 U U A . n B 1 74 G 74 74 74 G G A . n B 1 75 C 75 75 75 C C A . n B 1 76 C 76 76 76 C C A . n B 1 77 G 77 77 77 G G A . n B 1 78 A 78 78 78 A A A . n B 1 79 A 79 79 79 A A A . n B 1 80 A 80 80 80 A A A . n B 1 81 U 81 81 81 U U A . n B 1 82 A 82 82 82 A A A . n B 1 83 U 83 83 83 U U A . n B 1 84 C 84 84 84 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 1 MG MG R . D 2 MG 1 102 4 MG MG R . E 2 MG 1 103 5 MG MG R . F 2 MG 1 104 9 MG MG R . G 3 K 1 105 2 K K R . H 4 4BW 1 106 1 4BW 2BX R . I 3 K 1 107 1 K K R . J 2 MG 1 101 2 MG MG A . K 3 K 1 102 3 K K A . L 4 4BW 1 103 2 4BW 2BX A . M 5 HOH 1 201 174 HOH HOH R . M 5 HOH 2 202 71 HOH HOH R . M 5 HOH 3 203 110 HOH HOH R . M 5 HOH 4 204 116 HOH HOH R . M 5 HOH 5 205 78 HOH HOH R . M 5 HOH 6 206 63 HOH HOH R . M 5 HOH 7 207 139 HOH HOH R . M 5 HOH 8 208 9 HOH HOH R . M 5 HOH 9 209 13 HOH HOH R . M 5 HOH 10 210 100 HOH HOH R . M 5 HOH 11 211 34 HOH HOH R . M 5 HOH 12 212 35 HOH HOH R . M 5 HOH 13 213 39 HOH HOH R . M 5 HOH 14 214 18 HOH HOH R . M 5 HOH 15 215 86 HOH HOH R . M 5 HOH 16 216 3 HOH HOH R . M 5 HOH 17 217 27 HOH HOH R . M 5 HOH 18 218 47 HOH HOH R . M 5 HOH 19 219 141 HOH HOH R . M 5 HOH 20 220 177 HOH HOH R . M 5 HOH 21 221 20 HOH HOH R . M 5 HOH 22 222 48 HOH HOH R . M 5 HOH 23 223 6 HOH HOH R . M 5 HOH 24 224 8 HOH HOH R . M 5 HOH 25 225 23 HOH HOH R . M 5 HOH 26 226 81 HOH HOH R . M 5 HOH 27 227 190 HOH HOH R . M 5 HOH 28 228 163 HOH HOH R . M 5 HOH 29 229 186 HOH HOH R . M 5 HOH 30 230 120 HOH HOH R . M 5 HOH 31 231 16 HOH HOH R . M 5 HOH 32 232 1 HOH HOH R . M 5 HOH 33 233 55 HOH HOH R . M 5 HOH 34 234 165 HOH HOH R . M 5 HOH 35 235 108 HOH HOH R . M 5 HOH 36 236 84 HOH HOH R . M 5 HOH 37 237 79 HOH HOH R . M 5 HOH 38 238 54 HOH HOH R . M 5 HOH 39 239 156 HOH HOH R . M 5 HOH 40 240 117 HOH HOH R . M 5 HOH 41 241 14 HOH HOH R . M 5 HOH 42 242 98 HOH HOH R . M 5 HOH 43 243 28 HOH HOH R . M 5 HOH 44 244 129 HOH HOH R . M 5 HOH 45 245 68 HOH HOH R . M 5 HOH 46 246 143 HOH HOH R . M 5 HOH 47 247 119 HOH HOH R . M 5 HOH 48 248 89 HOH HOH R . M 5 HOH 49 249 191 HOH HOH R . M 5 HOH 50 250 109 HOH HOH R . M 5 HOH 51 251 93 HOH HOH R . M 5 HOH 52 252 51 HOH HOH R . M 5 HOH 53 253 56 HOH HOH R . M 5 HOH 54 254 24 HOH HOH R . M 5 HOH 55 255 45 HOH HOH R . M 5 HOH 56 256 171 HOH HOH R . M 5 HOH 57 257 40 HOH HOH R . M 5 HOH 58 258 94 HOH HOH R . M 5 HOH 59 259 2 HOH HOH R . M 5 HOH 60 260 192 HOH HOH R . M 5 HOH 61 261 159 HOH HOH R . M 5 HOH 62 262 121 HOH HOH R . M 5 HOH 63 263 99 HOH HOH R . M 5 HOH 64 264 131 HOH HOH R . M 5 HOH 65 265 74 HOH HOH R . M 5 HOH 66 266 75 HOH HOH R . M 5 HOH 67 267 134 HOH HOH R . M 5 HOH 68 268 97 HOH HOH R . M 5 HOH 69 269 130 HOH HOH R . M 5 HOH 70 270 64 HOH HOH R . M 5 HOH 71 271 38 HOH HOH R . M 5 HOH 72 272 49 HOH HOH R . M 5 HOH 73 273 162 HOH HOH R . M 5 HOH 74 274 193 HOH HOH R . M 5 HOH 75 275 105 HOH HOH R . M 5 HOH 76 276 133 HOH HOH R . M 5 HOH 77 277 103 HOH HOH R . M 5 HOH 78 278 80 HOH HOH R . M 5 HOH 79 279 157 HOH HOH R . M 5 HOH 80 280 187 HOH HOH R . M 5 HOH 81 281 188 HOH HOH R . M 5 HOH 82 282 189 HOH HOH R . M 5 HOH 83 283 66 HOH HOH R . M 5 HOH 84 284 96 HOH HOH R . M 5 HOH 85 285 101 HOH HOH R . M 5 HOH 86 286 77 HOH HOH R . M 5 HOH 87 287 168 HOH HOH R . M 5 HOH 88 288 111 HOH HOH R . M 5 HOH 89 289 194 HOH HOH R . M 5 HOH 90 290 61 HOH HOH R . M 5 HOH 91 291 201 HOH HOH R . M 5 HOH 92 292 183 HOH HOH R . M 5 HOH 93 293 152 HOH HOH R . M 5 HOH 94 294 179 HOH HOH R . M 5 HOH 95 295 181 HOH HOH R . M 5 HOH 96 296 176 HOH HOH R . M 5 HOH 97 297 178 HOH HOH R . N 5 HOH 1 201 196 HOH HOH A . N 5 HOH 2 202 124 HOH HOH A . N 5 HOH 3 203 107 HOH HOH A . N 5 HOH 4 204 150 HOH HOH A . N 5 HOH 5 205 29 HOH HOH A . N 5 HOH 6 206 127 HOH HOH A . N 5 HOH 7 207 65 HOH HOH A . N 5 HOH 8 208 57 HOH HOH A . N 5 HOH 9 209 32 HOH HOH A . N 5 HOH 10 210 173 HOH HOH A . N 5 HOH 11 211 36 HOH HOH A . N 5 HOH 12 212 31 HOH HOH A . N 5 HOH 13 213 22 HOH HOH A . N 5 HOH 14 214 5 HOH HOH A . N 5 HOH 15 215 15 HOH HOH A . N 5 HOH 16 216 26 HOH HOH A . N 5 HOH 17 217 19 HOH HOH A . N 5 HOH 18 218 106 HOH HOH A . N 5 HOH 19 219 88 HOH HOH A . N 5 HOH 20 220 52 HOH HOH A . N 5 HOH 21 221 180 HOH HOH A . N 5 HOH 22 222 114 HOH HOH A . N 5 HOH 23 223 138 HOH HOH A . N 5 HOH 24 224 167 HOH HOH A . N 5 HOH 25 225 72 HOH HOH A . N 5 HOH 26 226 144 HOH HOH A . N 5 HOH 27 227 123 HOH HOH A . N 5 HOH 28 228 112 HOH HOH A . N 5 HOH 29 229 46 HOH HOH A . N 5 HOH 30 230 172 HOH HOH A . N 5 HOH 31 231 62 HOH HOH A . N 5 HOH 32 232 136 HOH HOH A . N 5 HOH 33 233 30 HOH HOH A . N 5 HOH 34 234 140 HOH HOH A . N 5 HOH 35 235 91 HOH HOH A . N 5 HOH 36 236 25 HOH HOH A . N 5 HOH 37 237 69 HOH HOH A . N 5 HOH 38 238 44 HOH HOH A . N 5 HOH 39 239 102 HOH HOH A . N 5 HOH 40 240 160 HOH HOH A . N 5 HOH 41 241 60 HOH HOH A . N 5 HOH 42 242 12 HOH HOH A . N 5 HOH 43 243 137 HOH HOH A . N 5 HOH 44 244 90 HOH HOH A . N 5 HOH 45 245 59 HOH HOH A . N 5 HOH 46 246 73 HOH HOH A . N 5 HOH 47 247 7 HOH HOH A . N 5 HOH 48 248 42 HOH HOH A . N 5 HOH 49 249 92 HOH HOH A . N 5 HOH 50 250 158 HOH HOH A . N 5 HOH 51 251 115 HOH HOH A . N 5 HOH 52 252 10 HOH HOH A . N 5 HOH 53 253 21 HOH HOH A . N 5 HOH 54 254 43 HOH HOH A . N 5 HOH 55 255 153 HOH HOH A . N 5 HOH 56 256 82 HOH HOH A . N 5 HOH 57 257 58 HOH HOH A . N 5 HOH 58 258 85 HOH HOH A . N 5 HOH 59 259 122 HOH HOH A . N 5 HOH 60 260 113 HOH HOH A . N 5 HOH 61 261 67 HOH HOH A . N 5 HOH 62 262 118 HOH HOH A . N 5 HOH 63 263 169 HOH HOH A . N 5 HOH 64 264 53 HOH HOH A . N 5 HOH 65 265 197 HOH HOH A . N 5 HOH 66 266 50 HOH HOH A . N 5 HOH 67 267 132 HOH HOH A . N 5 HOH 68 268 135 HOH HOH A . N 5 HOH 69 269 154 HOH HOH A . N 5 HOH 70 270 76 HOH HOH A . N 5 HOH 71 271 33 HOH HOH A . N 5 HOH 72 272 95 HOH HOH A . N 5 HOH 73 273 87 HOH HOH A . N 5 HOH 74 274 70 HOH HOH A . N 5 HOH 75 275 198 HOH HOH A . N 5 HOH 76 276 175 HOH HOH A . N 5 HOH 77 277 17 HOH HOH A . N 5 HOH 78 278 41 HOH HOH A . N 5 HOH 79 279 83 HOH HOH A . N 5 HOH 80 280 164 HOH HOH A . N 5 HOH 81 281 161 HOH HOH A . N 5 HOH 82 282 128 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,M 2 1 B,J,K,L,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O2'" ? A A 19 ? R A 19 ? 1_555 K ? I K . ? R K 107 ? 1_555 "O2'" ? B A 18 ? A A 18 ? 1_555 95.7 ? 2 "O2'" ? A A 19 ? R A 19 ? 1_555 K ? I K . ? R K 107 ? 1_555 O ? N HOH . ? A HOH 267 ? 1_555 128.3 ? 3 "O2'" ? B A 18 ? A A 18 ? 1_555 K ? I K . ? R K 107 ? 1_555 O ? N HOH . ? A HOH 267 ? 1_555 108.7 ? 4 OP1 ? A G 44 ? R G 44 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 OP2 ? A C 45 ? R C 45 ? 1_555 99.9 ? 5 OP1 ? A G 44 ? R G 44 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 216 ? 1_555 76.0 ? 6 OP2 ? A C 45 ? R C 45 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 216 ? 1_555 173.5 ? 7 OP1 ? A G 44 ? R G 44 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 232 ? 1_555 89.2 ? 8 OP2 ? A C 45 ? R C 45 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 232 ? 1_555 78.9 ? 9 O ? M HOH . ? R HOH 216 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 232 ? 1_555 105.8 ? 10 OP1 ? A G 44 ? R G 44 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 259 ? 1_555 91.1 ? 11 OP2 ? A C 45 ? R C 45 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 259 ? 1_555 91.8 ? 12 O ? M HOH . ? R HOH 216 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 259 ? 1_555 83.4 ? 13 O ? M HOH . ? R HOH 232 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 259 ? 1_555 170.5 ? 14 OP1 ? A G 44 ? R G 44 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 281 ? 1_555 156.4 ? 15 OP2 ? A C 45 ? R C 45 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 281 ? 1_555 99.6 ? 16 O ? M HOH . ? R HOH 216 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 281 ? 1_555 85.6 ? 17 O ? M HOH . ? R HOH 232 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 281 ? 1_555 81.7 ? 18 O ? M HOH . ? R HOH 259 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? M HOH . ? R HOH 281 ? 1_555 101.5 ? 19 "O4'" ? A A 48 ? R A 48 ? 1_555 K ? G K . ? R K 105 ? 1_555 O6 ? A G 51 ? R G 51 ? 1_555 145.0 ? 20 "O4'" ? A A 48 ? R A 48 ? 1_555 K ? G K . ? R K 105 ? 1_555 O ? M HOH . ? R HOH 247 ? 1_555 91.2 ? 21 O6 ? A G 51 ? R G 51 ? 1_555 K ? G K . ? R K 105 ? 1_555 O ? M HOH . ? R HOH 247 ? 1_555 102.7 ? 22 "O4'" ? A A 48 ? R A 48 ? 1_555 K ? G K . ? R K 105 ? 1_555 O ? M HOH . ? R HOH 248 ? 1_555 66.7 ? 23 O6 ? A G 51 ? R G 51 ? 1_555 K ? G K . ? R K 105 ? 1_555 O ? M HOH . ? R HOH 248 ? 1_555 112.2 ? 24 O ? M HOH . ? R HOH 247 ? 1_555 K ? G K . ? R K 105 ? 1_555 O ? M HOH . ? R HOH 248 ? 1_555 143.2 ? 25 "O4'" ? A A 48 ? R A 48 ? 1_555 K ? G K . ? R K 105 ? 1_555 O ? M HOH . ? R HOH 284 ? 1_555 73.6 ? 26 O6 ? A G 51 ? R G 51 ? 1_555 K ? G K . ? R K 105 ? 1_555 O ? M HOH . ? R HOH 284 ? 1_555 139.5 ? 27 O ? M HOH . ? R HOH 247 ? 1_555 K ? G K . ? R K 105 ? 1_555 O ? M HOH . ? R HOH 284 ? 1_555 82.1 ? 28 O ? M HOH . ? R HOH 248 ? 1_555 K ? G K . ? R K 105 ? 1_555 O ? M HOH . ? R HOH 284 ? 1_555 64.0 ? 29 O ? M HOH . ? R HOH 274 ? 1_555 MG ? D MG . ? R MG 102 ? 1_555 O ? M HOH . ? R HOH 289 ? 1_555 123.3 ? 30 O ? M HOH . ? R HOH 276 ? 1_555 MG ? F MG . ? R MG 104 ? 1_555 O ? M HOH . ? R HOH 293 ? 1_555 104.5 ? 31 OP1 ? B G 44 ? A G 44 ? 1_555 MG ? J MG . ? A MG 101 ? 1_555 OP2 ? B C 45 ? A C 45 ? 1_555 76.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-15 2 'Structure model' 1 1 2015-04-22 3 'Structure model' 1 2 2015-07-22 4 'Structure model' 1 3 2017-09-27 5 'Structure model' 1 4 2019-12-04 6 'Structure model' 1 5 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Non-polymer description' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Source and taxonomy' 6 5 'Structure model' 'Author supporting evidence' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' 10 6 'Structure model' 'Refinement description' 11 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' pdbx_audit_support 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' pdbx_audit_support 5 6 'Structure model' chem_comp 6 6 'Structure model' chem_comp_atom 7 6 'Structure model' chem_comp_bond 8 6 'Structure model' database_2 9 6 'Structure model' pdbx_initial_refinement_model 10 6 'Structure model' pdbx_struct_conn_angle 11 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 2 4 'Structure model' '_pdbx_audit_support.funding_organization' 3 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 5 'Structure model' '_pdbx_audit_support.funding_organization' 5 6 'Structure model' '_chem_comp.pdbx_synonyms' 6 6 'Structure model' '_database_2.pdbx_DOI' 7 6 'Structure model' '_database_2.pdbx_database_accession' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 17 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 18 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 19 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 6 'Structure model' '_pdbx_struct_conn_angle.value' 26 6 'Structure model' '_struct_conn.conn_type_id' 27 6 'Structure model' '_struct_conn.id' 28 6 'Structure model' '_struct_conn.pdbx_dist_value' 29 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 30 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 81.0664 _pdbx_refine_tls.origin_y -3.4857 _pdbx_refine_tls.origin_z 99.0224 _pdbx_refine_tls.T[1][1] 0.1997 _pdbx_refine_tls.T[2][2] 0.1556 _pdbx_refine_tls.T[3][3] 0.1650 _pdbx_refine_tls.T[1][2] -0.0639 _pdbx_refine_tls.T[1][3] 0.0362 _pdbx_refine_tls.T[2][3] -0.0202 _pdbx_refine_tls.L[1][1] 0.9173 _pdbx_refine_tls.L[2][2] 0.4030 _pdbx_refine_tls.L[3][3] 0.4908 _pdbx_refine_tls.L[1][2] 0.1581 _pdbx_refine_tls.L[1][3] 0.2803 _pdbx_refine_tls.L[2][3] 0.2405 _pdbx_refine_tls.S[1][1] -0.0660 _pdbx_refine_tls.S[1][2] 0.1114 _pdbx_refine_tls.S[1][3] -0.1387 _pdbx_refine_tls.S[2][1] -0.0820 _pdbx_refine_tls.S[2][2] 0.0290 _pdbx_refine_tls.S[2][3] 0.0078 _pdbx_refine_tls.S[3][1] -0.0646 _pdbx_refine_tls.S[3][2] 0.0665 _pdbx_refine_tls.S[3][3] 0.0275 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.4_1496 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 224 ? ? O A HOH 242 ? ? 2.14 2 1 O A HOH 230 ? ? O A HOH 245 ? ? 2.19 3 1 O R HOH 256 ? ? O R HOH 261 ? ? 2.19 4 1 O A HOH 216 ? ? O A HOH 276 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" R G 37 ? ? P R C 38 ? ? 1.531 1.607 -0.076 0.012 Y 2 1 "O3'" A C 10 ? ? P A A 11 ? ? 1.535 1.607 -0.072 0.012 Y 3 1 "O3'" A A 48 ? ? P A A 49 ? ? 1.459 1.607 -0.148 0.012 Y 4 1 "O3'" A U 59 ? ? P A G 60 ? ? 1.521 1.607 -0.086 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" R GTP 1 ? ? "O3'" R GTP 1 ? ? P R G 2 ? ? 137.91 119.70 18.21 1.20 Y 2 1 "O3'" R GTP 1 ? ? P R G 2 ? ? "O5'" R G 2 ? ? 89.54 104.00 -14.46 1.90 Y 3 1 "O3'" R GTP 1 ? ? P R G 2 ? ? OP1 R G 2 ? ? 121.47 110.50 10.97 1.10 Y 4 1 "C3'" A GTP 1 ? ? "O3'" A GTP 1 ? ? P A G 2 ? ? 128.70 119.70 9.00 1.20 Y 5 1 "C2'" A C 10 ? ? "C3'" A C 10 ? ? "O3'" A C 10 ? ? 91.39 109.50 -18.11 2.20 N 6 1 N1 A C 10 ? ? "C1'" A C 10 ? ? "C2'" A C 10 ? ? 121.90 114.00 7.90 1.30 N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? R HOH 295 ? 5.99 . 2 1 O ? R HOH 296 ? 6.27 . 3 1 O ? R HOH 297 ? 7.94 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4BW OAC O N N 1 4BW CBC C N N 2 4BW NAT N N N 3 4BW CBA C N N 4 4BW NAA N N N 5 4BW NAS N N N 6 4BW CBG C Y N 7 4BW CBE C Y N 8 4BW NAR N Y N 9 4BW CAL C Y N 10 4BW NBQ N Y N 11 4BW CBO C N R 12 4BW CBI C N R 13 4BW OAG O N N 14 4BW OAX O N N 15 4BW CBK C N R 16 4BW CAN C N N 17 4BW OAV O N N 18 4BW PBR P N N 19 4BW "O3'" O N N 20 4BW OAH O N N 21 4BW OAD O N N 22 4BW CBM C N S 23 4BW OAZ O N N 24 4BW PBS P N N 25 4BW OAI O N N 26 4BW OAE O N N 27 4BW "O5'" O N N 28 4BW "C5'" C N N 29 4BW "C4'" C N R 30 4BW "O4'" O N N 31 4BW "C3'" C N S 32 4BW "C2'" C N R 33 4BW "O2'" O N N 34 4BW "C1'" C N R 35 4BW N9 N Y N 36 4BW C8 C Y N 37 4BW N7 N Y N 38 4BW C5 C Y N 39 4BW C4 C Y N 40 4BW N3 N Y N 41 4BW C2 C Y N 42 4BW N1 N Y N 43 4BW C6 C Y N 44 4BW N6 N N N 45 4BW H1 H N N 46 4BW H2 H N N 47 4BW H3 H N N 48 4BW H4 H N N 49 4BW H5 H N N 50 4BW H6 H N N 51 4BW H7 H N N 52 4BW H8 H N N 53 4BW H9 H N N 54 4BW H10 H N N 55 4BW H11 H N N 56 4BW H12 H N N 57 4BW H13 H N N 58 4BW H14 H N N 59 4BW H15 H N N 60 4BW H16 H N N 61 4BW H17 H N N 62 4BW H18 H N N 63 4BW H19 H N N 64 4BW H20 H N N 65 4BW H21 H N N 66 4BW H22 H N N 67 4BW H23 H N N 68 4BW H24 H N N 69 A OP3 O N N 70 A P P N N 71 A OP1 O N N 72 A OP2 O N N 73 A "O5'" O N N 74 A "C5'" C N N 75 A "C4'" C N R 76 A "O4'" O N N 77 A "C3'" C N S 78 A "O3'" O N N 79 A "C2'" C N R 80 A "O2'" O N N 81 A "C1'" C N R 82 A N9 N Y N 83 A C8 C Y N 84 A N7 N Y N 85 A C5 C Y N 86 A C6 C Y N 87 A N6 N N N 88 A N1 N Y N 89 A C2 C Y N 90 A N3 N Y N 91 A C4 C Y N 92 A HOP3 H N N 93 A HOP2 H N N 94 A "H5'" H N N 95 A "H5''" H N N 96 A "H4'" H N N 97 A "H3'" H N N 98 A "HO3'" H N N 99 A "H2'" H N N 100 A "HO2'" H N N 101 A "H1'" H N N 102 A H8 H N N 103 A H61 H N N 104 A H62 H N N 105 A H2 H N N 106 C OP3 O N N 107 C P P N N 108 C OP1 O N N 109 C OP2 O N N 110 C "O5'" O N N 111 C "C5'" C N N 112 C "C4'" C N R 113 C "O4'" O N N 114 C "C3'" C N S 115 C "O3'" O N N 116 C "C2'" C N R 117 C "O2'" O N N 118 C "C1'" C N R 119 C N1 N N N 120 C C2 C N N 121 C O2 O N N 122 C N3 N N N 123 C C4 C N N 124 C N4 N N N 125 C C5 C N N 126 C C6 C N N 127 C HOP3 H N N 128 C HOP2 H N N 129 C "H5'" H N N 130 C "H5''" H N N 131 C "H4'" H N N 132 C "H3'" H N N 133 C "HO3'" H N N 134 C "H2'" H N N 135 C "HO2'" H N N 136 C "H1'" H N N 137 C H41 H N N 138 C H42 H N N 139 C H5 H N N 140 C H6 H N N 141 G OP3 O N N 142 G P P N N 143 G OP1 O N N 144 G OP2 O N N 145 G "O5'" O N N 146 G "C5'" C N N 147 G "C4'" C N R 148 G "O4'" O N N 149 G "C3'" C N S 150 G "O3'" O N N 151 G "C2'" C N R 152 G "O2'" O N N 153 G "C1'" C N R 154 G N9 N Y N 155 G C8 C Y N 156 G N7 N Y N 157 G C5 C Y N 158 G C6 C N N 159 G O6 O N N 160 G N1 N N N 161 G C2 C N N 162 G N2 N N N 163 G N3 N N N 164 G C4 C Y N 165 G HOP3 H N N 166 G HOP2 H N N 167 G "H5'" H N N 168 G "H5''" H N N 169 G "H4'" H N N 170 G "H3'" H N N 171 G "HO3'" H N N 172 G "H2'" H N N 173 G "HO2'" H N N 174 G "H1'" H N N 175 G H8 H N N 176 G H1 H N N 177 G H21 H N N 178 G H22 H N N 179 GTP PG P N N 180 GTP O1G O N N 181 GTP O2G O N N 182 GTP O3G O N N 183 GTP O3B O N N 184 GTP PB P N N 185 GTP O1B O N N 186 GTP O2B O N N 187 GTP O3A O N N 188 GTP PA P N N 189 GTP O1A O N N 190 GTP O2A O N N 191 GTP "O5'" O N N 192 GTP "C5'" C N N 193 GTP "C4'" C N R 194 GTP "O4'" O N N 195 GTP "C3'" C N S 196 GTP "O3'" O N N 197 GTP "C2'" C N R 198 GTP "O2'" O N N 199 GTP "C1'" C N R 200 GTP N9 N Y N 201 GTP C8 C Y N 202 GTP N7 N Y N 203 GTP C5 C Y N 204 GTP C6 C N N 205 GTP O6 O N N 206 GTP N1 N N N 207 GTP C2 C N N 208 GTP N2 N N N 209 GTP N3 N N N 210 GTP C4 C Y N 211 GTP HOG2 H N N 212 GTP HOG3 H N N 213 GTP HOB2 H N N 214 GTP HOA2 H N N 215 GTP "H5'" H N N 216 GTP "H5''" H N N 217 GTP "H4'" H N N 218 GTP "H3'" H N N 219 GTP "HO3'" H N N 220 GTP "H2'" H N N 221 GTP "HO2'" H N N 222 GTP "H1'" H N N 223 GTP H8 H N N 224 GTP HN1 H N N 225 GTP HN21 H N N 226 GTP HN22 H N N 227 HOH O O N N 228 HOH H1 H N N 229 HOH H2 H N N 230 K K K N N 231 MG MG MG N N 232 U OP3 O N N 233 U P P N N 234 U OP1 O N N 235 U OP2 O N N 236 U "O5'" O N N 237 U "C5'" C N N 238 U "C4'" C N R 239 U "O4'" O N N 240 U "C3'" C N S 241 U "O3'" O N N 242 U "C2'" C N R 243 U "O2'" O N N 244 U "C1'" C N R 245 U N1 N N N 246 U C2 C N N 247 U O2 O N N 248 U N3 N N N 249 U C4 C N N 250 U O4 O N N 251 U C5 C N N 252 U C6 C N N 253 U HOP3 H N N 254 U HOP2 H N N 255 U "H5'" H N N 256 U "H5''" H N N 257 U "H4'" H N N 258 U "H3'" H N N 259 U "HO3'" H N N 260 U "H2'" H N N 261 U "HO2'" H N N 262 U "H1'" H N N 263 U H3 H N N 264 U H5 H N N 265 U H6 H N N 266 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4BW NAA CBA sing N N 1 4BW CBA NAS doub N N 2 4BW CBA NAT sing N N 3 4BW NAS CBG sing N N 4 4BW NAT CBC sing N N 5 4BW OAG CBI sing N N 6 4BW CBG NBQ sing Y N 7 4BW CBG CBE doub Y N 8 4BW CBC CBE sing N N 9 4BW CBC OAC doub N N 10 4BW OAI PBS doub N N 11 4BW CBI CBO sing N N 12 4BW CBI CBM sing N N 13 4BW CBO NBQ sing N N 14 4BW CBO OAX sing N N 15 4BW NBQ CAL sing Y N 16 4BW CBE NAR sing Y N 17 4BW OAE PBS sing N N 18 4BW OAX CBK sing N N 19 4BW PBS OAZ sing N N 20 4BW PBS "O5'" sing N N 21 4BW OAZ CBM sing N N 22 4BW CBM CBK sing N N 23 4BW CAL NAR doub Y N 24 4BW CBK CAN sing N N 25 4BW N6 C6 sing N N 26 4BW N7 C8 doub Y N 27 4BW N7 C5 sing Y N 28 4BW "O5'" "C5'" sing N N 29 4BW C8 N9 sing Y N 30 4BW C6 C5 doub Y N 31 4BW C6 N1 sing Y N 32 4BW C5 C4 sing Y N 33 4BW CAN OAV sing N N 34 4BW "C5'" "C4'" sing N N 35 4BW OAV PBR sing N N 36 4BW N9 C4 sing Y N 37 4BW N9 "C1'" sing N N 38 4BW N1 C2 doub Y N 39 4BW C4 N3 doub Y N 40 4BW "O4'" "C4'" sing N N 41 4BW "O4'" "C1'" sing N N 42 4BW "C4'" "C3'" sing N N 43 4BW "C3'" "C2'" sing N N 44 4BW "C3'" "O3'" sing N N 45 4BW "C1'" "C2'" sing N N 46 4BW C2 N3 sing Y N 47 4BW PBR OAD doub N N 48 4BW PBR "O3'" sing N N 49 4BW PBR OAH sing N N 50 4BW "C2'" "O2'" sing N N 51 4BW NAT H1 sing N N 52 4BW NAA H2 sing N N 53 4BW NAA H3 sing N N 54 4BW CAL H4 sing N N 55 4BW CBO H5 sing N N 56 4BW CBI H6 sing N N 57 4BW OAG H7 sing N N 58 4BW CBK H8 sing N N 59 4BW CAN H9 sing N N 60 4BW CAN H10 sing N N 61 4BW OAH H11 sing N N 62 4BW CBM H12 sing N N 63 4BW OAE H13 sing N N 64 4BW "C5'" H14 sing N N 65 4BW "C5'" H15 sing N N 66 4BW "C4'" H16 sing N N 67 4BW "C3'" H17 sing N N 68 4BW "C2'" H18 sing N N 69 4BW "O2'" H19 sing N N 70 4BW "C1'" H20 sing N N 71 4BW C8 H21 sing N N 72 4BW C2 H22 sing N N 73 4BW N6 H23 sing N N 74 4BW N6 H24 sing N N 75 A OP3 P sing N N 76 A OP3 HOP3 sing N N 77 A P OP1 doub N N 78 A P OP2 sing N N 79 A P "O5'" sing N N 80 A OP2 HOP2 sing N N 81 A "O5'" "C5'" sing N N 82 A "C5'" "C4'" sing N N 83 A "C5'" "H5'" sing N N 84 A "C5'" "H5''" sing N N 85 A "C4'" "O4'" sing N N 86 A "C4'" "C3'" sing N N 87 A "C4'" "H4'" sing N N 88 A "O4'" "C1'" sing N N 89 A "C3'" "O3'" sing N N 90 A "C3'" "C2'" sing N N 91 A "C3'" "H3'" sing N N 92 A "O3'" "HO3'" sing N N 93 A "C2'" "O2'" sing N N 94 A "C2'" "C1'" sing N N 95 A "C2'" "H2'" sing N N 96 A "O2'" "HO2'" sing N N 97 A "C1'" N9 sing N N 98 A "C1'" "H1'" sing N N 99 A N9 C8 sing Y N 100 A N9 C4 sing Y N 101 A C8 N7 doub Y N 102 A C8 H8 sing N N 103 A N7 C5 sing Y N 104 A C5 C6 sing Y N 105 A C5 C4 doub Y N 106 A C6 N6 sing N N 107 A C6 N1 doub Y N 108 A N6 H61 sing N N 109 A N6 H62 sing N N 110 A N1 C2 sing Y N 111 A C2 N3 doub Y N 112 A C2 H2 sing N N 113 A N3 C4 sing Y N 114 C OP3 P sing N N 115 C OP3 HOP3 sing N N 116 C P OP1 doub N N 117 C P OP2 sing N N 118 C P "O5'" sing N N 119 C OP2 HOP2 sing N N 120 C "O5'" "C5'" sing N N 121 C "C5'" "C4'" sing N N 122 C "C5'" "H5'" sing N N 123 C "C5'" "H5''" sing N N 124 C "C4'" "O4'" sing N N 125 C "C4'" "C3'" sing N N 126 C "C4'" "H4'" sing N N 127 C "O4'" "C1'" sing N N 128 C "C3'" "O3'" sing N N 129 C "C3'" "C2'" sing N N 130 C "C3'" "H3'" sing N N 131 C "O3'" "HO3'" sing N N 132 C "C2'" "O2'" sing N N 133 C "C2'" "C1'" sing N N 134 C "C2'" "H2'" sing N N 135 C "O2'" "HO2'" sing N N 136 C "C1'" N1 sing N N 137 C "C1'" "H1'" sing N N 138 C N1 C2 sing N N 139 C N1 C6 sing N N 140 C C2 O2 doub N N 141 C C2 N3 sing N N 142 C N3 C4 doub N N 143 C C4 N4 sing N N 144 C C4 C5 sing N N 145 C N4 H41 sing N N 146 C N4 H42 sing N N 147 C C5 C6 doub N N 148 C C5 H5 sing N N 149 C C6 H6 sing N N 150 G OP3 P sing N N 151 G OP3 HOP3 sing N N 152 G P OP1 doub N N 153 G P OP2 sing N N 154 G P "O5'" sing N N 155 G OP2 HOP2 sing N N 156 G "O5'" "C5'" sing N N 157 G "C5'" "C4'" sing N N 158 G "C5'" "H5'" sing N N 159 G "C5'" "H5''" sing N N 160 G "C4'" "O4'" sing N N 161 G "C4'" "C3'" sing N N 162 G "C4'" "H4'" sing N N 163 G "O4'" "C1'" sing N N 164 G "C3'" "O3'" sing N N 165 G "C3'" "C2'" sing N N 166 G "C3'" "H3'" sing N N 167 G "O3'" "HO3'" sing N N 168 G "C2'" "O2'" sing N N 169 G "C2'" "C1'" sing N N 170 G "C2'" "H2'" sing N N 171 G "O2'" "HO2'" sing N N 172 G "C1'" N9 sing N N 173 G "C1'" "H1'" sing N N 174 G N9 C8 sing Y N 175 G N9 C4 sing Y N 176 G C8 N7 doub Y N 177 G C8 H8 sing N N 178 G N7 C5 sing Y N 179 G C5 C6 sing N N 180 G C5 C4 doub Y N 181 G C6 O6 doub N N 182 G C6 N1 sing N N 183 G N1 C2 sing N N 184 G N1 H1 sing N N 185 G C2 N2 sing N N 186 G C2 N3 doub N N 187 G N2 H21 sing N N 188 G N2 H22 sing N N 189 G N3 C4 sing N N 190 GTP PG O1G doub N N 191 GTP PG O2G sing N N 192 GTP PG O3G sing N N 193 GTP PG O3B sing N N 194 GTP O2G HOG2 sing N N 195 GTP O3G HOG3 sing N N 196 GTP O3B PB sing N N 197 GTP PB O1B doub N N 198 GTP PB O2B sing N N 199 GTP PB O3A sing N N 200 GTP O2B HOB2 sing N N 201 GTP O3A PA sing N N 202 GTP PA O1A doub N N 203 GTP PA O2A sing N N 204 GTP PA "O5'" sing N N 205 GTP O2A HOA2 sing N N 206 GTP "O5'" "C5'" sing N N 207 GTP "C5'" "C4'" sing N N 208 GTP "C5'" "H5'" sing N N 209 GTP "C5'" "H5''" sing N N 210 GTP "C4'" "O4'" sing N N 211 GTP "C4'" "C3'" sing N N 212 GTP "C4'" "H4'" sing N N 213 GTP "O4'" "C1'" sing N N 214 GTP "C3'" "O3'" sing N N 215 GTP "C3'" "C2'" sing N N 216 GTP "C3'" "H3'" sing N N 217 GTP "O3'" "HO3'" sing N N 218 GTP "C2'" "O2'" sing N N 219 GTP "C2'" "C1'" sing N N 220 GTP "C2'" "H2'" sing N N 221 GTP "O2'" "HO2'" sing N N 222 GTP "C1'" N9 sing N N 223 GTP "C1'" "H1'" sing N N 224 GTP N9 C8 sing Y N 225 GTP N9 C4 sing Y N 226 GTP C8 N7 doub Y N 227 GTP C8 H8 sing N N 228 GTP N7 C5 sing Y N 229 GTP C5 C6 sing N N 230 GTP C5 C4 doub Y N 231 GTP C6 O6 doub N N 232 GTP C6 N1 sing N N 233 GTP N1 C2 sing N N 234 GTP N1 HN1 sing N N 235 GTP C2 N2 sing N N 236 GTP C2 N3 doub N N 237 GTP N2 HN21 sing N N 238 GTP N2 HN22 sing N N 239 GTP N3 C4 sing N N 240 HOH O H1 sing N N 241 HOH O H2 sing N N 242 U OP3 P sing N N 243 U OP3 HOP3 sing N N 244 U P OP1 doub N N 245 U P OP2 sing N N 246 U P "O5'" sing N N 247 U OP2 HOP2 sing N N 248 U "O5'" "C5'" sing N N 249 U "C5'" "C4'" sing N N 250 U "C5'" "H5'" sing N N 251 U "C5'" "H5''" sing N N 252 U "C4'" "O4'" sing N N 253 U "C4'" "C3'" sing N N 254 U "C4'" "H4'" sing N N 255 U "O4'" "C1'" sing N N 256 U "C3'" "O3'" sing N N 257 U "C3'" "C2'" sing N N 258 U "C3'" "H3'" sing N N 259 U "O3'" "HO3'" sing N N 260 U "C2'" "O2'" sing N N 261 U "C2'" "C1'" sing N N 262 U "C2'" "H2'" sing N N 263 U "O2'" "HO2'" sing N N 264 U "C1'" N1 sing N N 265 U "C1'" "H1'" sing N N 266 U N1 C2 sing N N 267 U N1 C6 sing N N 268 U C2 O2 doub N N 269 U C2 N3 sing N N 270 U N3 C4 sing N N 271 U N3 H3 sing N N 272 U C4 O4 doub N N 273 U C4 C5 sing N N 274 U C5 C6 doub N N 275 U C5 H5 sing N N 276 U C6 H6 sing N N 277 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4YAZ 'double helix' 4YAZ 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A C 84 1_555 -0.206 -0.051 -0.426 -14.384 -2.474 1.757 1 R_GTP1:C84_R R 1 ? R 84 ? 19 1 1 A G 2 1_555 A U 83 1_555 -2.258 -0.574 0.018 -1.318 -20.485 1.650 2 R_G2:U83_R R 2 ? R 83 ? 28 1 1 A U 3 1_555 A A 82 1_555 0.218 -0.149 -0.008 -0.868 -21.130 1.066 3 R_U3:A82_R R 3 ? R 82 ? 20 1 1 A A 4 1_555 A U 81 1_555 -0.397 -0.153 0.086 12.081 -6.290 -0.291 4 R_A4:U81_R R 4 ? R 81 ? 20 1 1 A A 6 1_555 A A 80 1_555 3.865 2.372 0.609 -19.748 -14.646 -71.036 5 R_A6:A80_R R 6 ? R 80 ? ? ? 1 A C 7 1_555 A G 77 1_555 0.161 -0.117 0.424 -22.044 -6.244 0.584 6 R_C7:G77_R R 7 ? R 77 ? 19 1 1 A G 8 1_555 A C 76 1_555 0.159 -0.052 0.207 14.580 -0.668 1.288 7 R_G8:C76_R R 8 ? R 76 ? 19 1 1 A U 13 1_555 A A 41 1_555 -1.102 1.502 -0.367 -15.538 -22.059 -51.528 8 R_U13:A41_R R 13 ? R 41 ? ? ? 1 A C 15 1_555 A G 40 1_555 0.203 -0.125 -0.207 0.469 -1.915 -2.981 9 R_C15:G40_R R 15 ? R 40 ? 19 1 1 A U 16 1_555 A G 39 1_555 2.196 -0.494 -0.126 9.340 -1.505 1.634 10 R_U16:G39_R R 16 ? R 39 ? 28 1 1 A G 66 1_555 A C 38 1_555 0.023 -0.160 0.141 -1.892 -5.958 -3.987 11 R_G66:C38_R R 66 ? R 38 ? 19 1 1 A A 19 1_555 A G 36 1_555 -6.747 -4.327 0.218 12.400 -2.717 -3.476 12 R_A19:G36_R R 19 ? R 36 ? 11 9 1 A C 20 1_555 A G 35 1_555 -0.125 -0.200 -0.146 11.875 -9.988 -1.688 13 R_C20:G35_R R 20 ? R 35 ? 19 1 1 A C 21 1_555 A G 34 1_555 0.384 -0.266 -0.080 4.397 -9.640 3.091 14 R_C21:G34_R R 21 ? R 34 ? 19 1 1 A A 22 1_555 A U 33 1_555 -0.112 -0.306 -0.249 -1.783 -19.048 3.496 15 R_A22:U33_R R 22 ? R 33 ? 20 1 1 A U 23 1_555 A A 32 1_555 0.096 -0.254 -0.084 3.145 -11.996 -1.464 16 R_U23:A32_R R 23 ? R 32 ? 20 1 1 A C 24 1_555 A G 31 1_555 0.404 -0.154 -0.139 6.591 -7.884 1.732 17 R_C24:G31_R R 24 ? R 31 ? 19 1 1 A C 25 1_555 A G 30 1_555 0.143 -0.146 -0.268 6.809 -2.313 -1.810 18 R_C25:G30_R R 25 ? R 30 ? 19 1 1 A A 42 1_555 A U 73 1_555 -4.315 -2.299 -0.154 9.588 0.747 -93.569 19 R_A42:U73_R R 42 ? R 73 ? 24 4 1 A G 44 1_555 A C 72 1_555 -0.170 -0.235 -0.058 -0.534 -5.480 -2.240 20 R_G44:C72_R R 44 ? R 72 ? 19 1 1 A C 45 1_555 A G 71 1_555 0.275 -0.231 0.019 2.433 -6.925 -0.059 21 R_C45:G71_R R 45 ? R 71 ? 19 1 1 A C 46 1_555 A G 70 1_555 0.591 -0.308 -0.192 2.894 -8.449 0.097 22 R_C46:G70_R R 46 ? R 70 ? 19 1 1 A U 47 1_555 A G 69 1_555 2.526 -0.516 -0.061 -3.722 -4.078 -2.410 23 R_U47:G69_R R 47 ? R 69 ? 28 1 1 A G 50 1_555 A C 68 1_555 -0.259 -0.238 -0.229 -10.284 0.172 -0.269 24 R_G50:C68_R R 50 ? R 68 ? 19 1 1 A G 51 1_555 A C 67 1_555 -0.011 -0.182 -0.251 -10.705 -11.506 1.248 25 R_G51:C67_R R 51 ? R 67 ? 19 1 1 A G 52 1_555 A C 64 1_555 -0.312 -0.219 0.133 3.702 -3.825 -2.541 26 R_G52:C64_R R 52 ? R 64 ? 19 1 1 A U 53 1_555 A A 63 1_555 -0.011 -0.141 0.014 10.530 -4.205 2.073 27 R_U53:A63_R R 53 ? R 63 ? 20 1 1 A C 54 1_555 A G 62 1_555 0.347 -0.248 -0.027 -0.228 -13.385 2.992 28 R_C54:G62_R R 54 ? R 62 ? 19 1 1 A U 55 1_555 A A 61 1_555 -0.200 -0.248 0.328 -9.196 -5.279 0.457 29 R_U55:A61_R R 55 ? R 61 ? 20 1 1 A C 56 1_555 A G 60 1_555 0.143 -0.179 -0.476 3.303 7.152 -1.191 30 R_C56:G60_R R 56 ? R 60 ? 19 1 1 B GTP 1 1_555 B C 84 1_555 -0.274 -0.001 -0.317 -9.890 -5.650 0.165 31 A_GTP1:C84_A A 1 ? A 84 ? 19 1 1 B G 2 1_555 B U 83 1_555 -2.073 -0.592 0.293 -5.077 -18.461 -1.090 32 A_G2:U83_A A 2 ? A 83 ? 28 1 1 B U 3 1_555 B A 82 1_555 0.319 -0.372 0.511 -7.174 -20.994 -1.781 33 A_U3:A82_A A 3 ? A 82 ? 20 1 1 B A 4 1_555 B U 81 1_555 0.024 -0.116 0.637 -0.425 -10.422 1.205 34 A_A4:U81_A A 4 ? A 81 ? 20 1 1 B C 7 1_555 B G 77 1_555 0.570 -0.263 0.145 -20.675 -3.193 1.420 35 A_C7:G77_A A 7 ? A 77 ? 19 1 1 B G 8 1_555 B C 76 1_555 0.013 -0.162 0.206 18.110 -0.327 -3.239 36 A_G8:C76_A A 8 ? A 76 ? 19 1 1 B U 13 1_555 B A 41 1_555 -1.213 1.813 -0.080 -9.563 -18.554 -49.192 37 A_U13:A41_A A 13 ? A 41 ? ? ? 1 B C 15 1_555 B G 40 1_555 0.074 -0.001 -0.312 1.807 -3.252 -0.424 38 A_C15:G40_A A 15 ? A 40 ? 19 1 1 B U 16 1_555 B G 39 1_555 2.303 -0.411 -0.306 13.882 -5.854 -0.266 39 A_U16:G39_A A 16 ? A 39 ? 28 1 1 B G 66 1_555 B C 38 1_555 -0.137 -0.162 0.008 -0.085 -1.676 -1.810 40 A_G66:C38_A A 66 ? A 38 ? 19 1 1 B A 19 1_555 B G 36 1_555 -6.934 -4.233 0.144 11.203 -0.200 -1.849 41 A_A19:G36_A A 19 ? A 36 ? 11 10 1 B C 20 1_555 B G 35 1_555 -0.031 -0.093 -0.333 14.667 -13.601 -1.028 42 A_C20:G35_A A 20 ? A 35 ? 19 1 1 B C 21 1_555 B G 34 1_555 0.332 -0.074 0.366 3.410 -7.300 3.839 43 A_C21:G34_A A 21 ? A 34 ? 19 1 1 B A 22 1_555 B U 33 1_555 -0.380 -0.216 -0.117 0.921 -10.914 -0.060 44 A_A22:U33_A A 22 ? A 33 ? 20 1 1 B U 23 1_555 B A 32 1_555 -0.118 -0.112 0.276 -5.934 -7.989 -0.521 45 A_U23:A32_A A 23 ? A 32 ? 20 1 1 B C 24 1_555 B G 31 1_555 0.494 -0.060 -0.296 10.999 -7.387 -0.052 46 A_C24:G31_A A 24 ? A 31 ? 19 1 1 B C 25 1_555 B G 30 1_555 0.469 0.080 -0.037 4.540 -2.778 5.777 47 A_C25:G30_A A 25 ? A 30 ? 19 1 1 B A 42 1_555 B U 73 1_555 -3.839 -1.862 -0.417 3.741 -4.588 -81.193 48 A_A42:U73_A A 42 ? A 73 ? 24 4 1 B G 44 1_555 B C 72 1_555 -0.479 -0.175 0.274 9.222 -0.779 -2.674 49 A_G44:C72_A A 44 ? A 72 ? 19 1 1 B C 45 1_555 B G 71 1_555 0.324 -0.185 -0.120 7.237 -13.911 2.023 50 A_C45:G71_A A 45 ? A 71 ? 19 1 1 B C 46 1_555 B G 70 1_555 0.530 -0.168 -0.116 -0.011 -12.692 2.372 51 A_C46:G70_A A 46 ? A 70 ? 19 1 1 B U 47 1_555 B G 69 1_555 2.619 -0.565 -0.115 -7.038 -8.162 2.810 52 A_U47:G69_A A 47 ? A 69 ? 28 1 1 B G 50 1_555 B C 68 1_555 -0.201 -0.202 -0.025 -7.526 4.360 0.317 53 A_G50:C68_A A 50 ? A 68 ? 19 1 1 B G 51 1_555 B C 67 1_555 0.176 -0.157 -0.034 -6.809 -5.164 -0.903 54 A_G51:C67_A A 51 ? A 67 ? 19 1 1 B G 52 1_555 B C 64 1_555 -0.281 -0.145 0.238 7.302 -2.228 -0.628 55 A_G52:C64_A A 52 ? A 64 ? 19 1 1 B U 53 1_555 B A 63 1_555 -0.094 -0.133 -0.036 11.565 -7.165 4.383 56 A_U53:A63_A A 53 ? A 63 ? 20 1 1 B C 54 1_555 B G 62 1_555 0.319 -0.169 -0.370 4.702 -16.430 4.418 57 A_C54:G62_A A 54 ? A 62 ? 19 1 1 B U 55 1_555 B A 61 1_555 0.004 -0.118 -0.068 -3.991 -4.165 2.925 58 A_U55:A61_A A 55 ? A 61 ? 20 1 1 B C 56 1_555 B G 60 1_555 0.095 -0.192 -0.481 2.917 6.804 -1.727 59 A_C56:G60_A A 56 ? A 60 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A C 84 1_555 A G 2 1_555 A U 83 1_555 0.009 -1.940 2.789 -5.801 11.108 21.437 -6.919 -1.274 1.555 27.084 14.145 24.794 1 RR_GTP1G2:U83C84_RR R 1 ? R 84 ? R 2 ? R 83 ? 1 A G 2 1_555 A U 83 1_555 A U 3 1_555 A A 82 1_555 0.021 -1.076 3.294 -1.715 6.880 41.668 -2.187 -0.201 3.083 9.589 2.391 42.240 2 RR_G2U3:A82U83_RR R 2 ? R 83 ? R 3 ? R 82 ? 1 A U 3 1_555 A A 82 1_555 A A 4 1_555 A U 81 1_555 -0.417 -1.568 2.906 -0.062 21.368 21.306 -6.082 0.794 0.969 45.582 0.133 30.087 3 RR_U3A4:U81A82_RR R 3 ? R 82 ? R 4 ? R 81 ? 1 A A 4 1_555 A U 81 1_555 A A 6 1_555 A A 80 1_555 0.621 -0.635 3.385 -1.593 0.920 107.925 -0.405 -0.405 3.375 0.569 0.985 107.936 4 RR_A4A6:A80U81_RR R 4 ? R 81 ? R 6 ? R 80 ? 1 A A 6 1_555 A A 80 1_555 A C 7 1_555 A G 77 1_555 3.572 -0.856 4.450 -6.835 5.906 24.026 -3.904 -10.335 3.041 13.589 15.726 25.644 5 RR_A6C7:G77A80_RR R 6 ? R 80 ? R 7 ? R 77 ? 1 A C 7 1_555 A G 77 1_555 A G 8 1_555 A C 76 1_555 0.174 -0.420 2.509 2.723 8.958 25.339 -2.612 0.148 2.239 19.588 -5.955 26.986 6 RR_C7G8:C76G77_RR R 7 ? R 77 ? R 8 ? R 76 ? 1 A U 13 1_555 A A 41 1_555 A C 15 1_555 A G 40 1_555 0.887 -2.906 6.559 0.728 11.720 36.663 -7.155 -1.177 5.428 18.070 -1.123 38.436 7 RR_U13C15:G40A41_RR R 13 ? R 41 ? R 15 ? R 40 ? 1 A C 15 1_555 A G 40 1_555 A U 16 1_555 A G 39 1_555 0.655 -1.679 3.227 -0.321 2.008 35.176 -3.063 -1.128 3.124 3.319 0.530 35.233 8 RR_C15U16:G39G40_RR R 15 ? R 40 ? R 16 ? R 39 ? 1 A U 16 1_555 A G 39 1_555 A G 66 1_555 A C 38 1_555 -4.928 -0.621 3.394 -10.796 -0.155 43.675 -0.796 5.263 4.432 -0.205 14.253 44.926 9 RR_U16G66:C38G39_RR R 16 ? R 39 ? R 66 ? R 38 ? 1 A A 19 1_555 A G 36 1_555 A C 20 1_555 A G 35 1_555 0.228 -1.246 3.409 -4.355 9.907 63.362 -1.604 -0.405 3.184 9.359 4.114 64.184 10 RR_A19C20:G35G36_RR R 19 ? R 36 ? R 20 ? R 35 ? 1 A C 20 1_555 A G 35 1_555 A C 21 1_555 A G 34 1_555 -0.494 -2.085 3.417 -2.876 9.059 29.532 -5.579 0.392 2.708 17.218 5.467 30.991 11 RR_C20C21:G34G35_RR R 20 ? R 35 ? R 21 ? R 34 ? 1 A C 21 1_555 A G 34 1_555 A A 22 1_555 A U 33 1_555 -0.512 -1.484 3.336 1.432 12.795 30.807 -4.570 1.115 2.513 22.872 -2.559 33.329 12 RR_C21A22:U33G34_RR R 21 ? R 34 ? R 22 ? R 33 ? 1 A A 22 1_555 A U 33 1_555 A U 23 1_555 A A 32 1_555 -0.324 -0.976 3.147 -1.972 11.227 32.175 -3.303 0.265 2.681 19.508 3.427 34.084 13 RR_A22U23:A32U33_RR R 22 ? R 33 ? R 23 ? R 32 ? 1 A U 23 1_555 A A 32 1_555 A C 24 1_555 A G 31 1_555 0.423 -1.472 3.139 1.400 9.598 34.049 -3.702 -0.510 2.654 15.992 -2.333 35.365 14 RR_U23C24:G31A32_RR R 23 ? R 32 ? R 24 ? R 31 ? 1 A C 24 1_555 A G 31 1_555 A C 25 1_555 A G 30 1_555 -0.156 -2.190 3.241 0.066 5.914 28.287 -5.604 0.326 2.736 11.936 -0.133 28.886 15 RR_C24C25:G30G31_RR R 24 ? R 31 ? R 25 ? R 30 ? 1 A A 42 1_555 A U 73 1_555 A G 44 1_555 A C 72 1_555 2.920 -2.034 3.546 -6.367 4.690 74.868 -1.814 -2.593 3.212 3.848 5.224 75.223 16 RR_A42G44:C72U73_RR R 42 ? R 73 ? R 44 ? R 72 ? 1 A G 44 1_555 A C 72 1_555 A C 45 1_555 A G 71 1_555 -0.487 -1.708 3.180 -3.213 2.029 35.178 -3.098 0.344 3.111 3.345 5.297 35.376 17 RR_G44C45:G71C72_RR R 44 ? R 72 ? R 45 ? R 71 ? 1 A C 45 1_555 A G 71 1_555 A C 46 1_555 A G 70 1_555 1.171 -2.156 3.219 4.174 7.263 28.536 -5.623 -1.468 2.739 14.348 -8.245 29.716 18 RR_C45C46:G70G71_RR R 45 ? R 71 ? R 46 ? R 70 ? 1 A C 46 1_555 A G 70 1_555 A U 47 1_555 A G 69 1_555 -0.239 -1.887 3.493 2.238 4.215 40.838 -3.162 0.592 3.273 6.016 -3.193 41.104 19 RR_C46U47:G69G70_RR R 46 ? R 70 ? R 47 ? R 69 ? 1 A U 47 1_555 A G 69 1_555 A G 50 1_555 A C 68 1_555 -3.399 -1.564 3.407 3.130 7.299 45.819 -2.582 4.565 2.913 9.293 -3.985 46.466 20 RR_U47G50:C68G69_RR R 47 ? R 69 ? R 50 ? R 68 ? 1 A G 50 1_555 A C 68 1_555 A G 51 1_555 A C 67 1_555 0.404 -2.044 3.345 3.435 3.465 29.508 -4.675 -0.076 3.116 6.745 -6.686 29.899 21 RR_G50G51:C67C68_RR R 50 ? R 68 ? R 51 ? R 67 ? 1 A G 51 1_555 A C 67 1_555 A G 52 1_555 A C 64 1_555 3.039 -1.270 3.340 -8.102 -3.021 54.724 -1.195 -3.732 2.958 -3.263 8.753 55.351 22 RR_G51G52:C64C67_RR R 51 ? R 67 ? R 52 ? R 64 ? 1 A G 52 1_555 A C 64 1_555 A U 53 1_555 A A 63 1_555 0.123 -1.613 3.176 -1.409 1.952 31.796 -3.276 -0.469 3.066 3.556 2.568 31.884 23 RR_G52U53:A63C64_RR R 52 ? R 64 ? R 53 ? R 63 ? 1 A U 53 1_555 A A 63 1_555 A C 54 1_555 A G 62 1_555 0.630 -2.011 3.490 2.897 3.732 34.850 -3.909 -0.592 3.304 6.196 -4.809 35.159 24 RR_U53C54:G62A63_RR R 53 ? R 63 ? R 54 ? R 62 ? 1 A C 54 1_555 A G 62 1_555 A U 55 1_555 A A 61 1_555 -0.857 -2.392 3.487 -3.573 5.567 24.823 -6.961 0.916 2.980 12.665 8.130 25.676 25 RR_C54U55:A61G62_RR R 54 ? R 62 ? R 55 ? R 61 ? 1 A U 55 1_555 A A 61 1_555 A C 56 1_555 A G 60 1_555 0.197 -0.888 3.140 7.556 -5.818 35.266 -0.622 0.720 3.215 -9.392 -12.199 36.494 26 RR_U55C56:G60A61_RR R 55 ? R 61 ? R 56 ? R 60 ? 1 B GTP 1 1_555 B C 84 1_555 B G 2 1_555 B U 83 1_555 0.032 -1.879 2.972 -5.971 8.389 26.244 -5.477 -1.215 2.217 17.635 12.552 28.159 27 AA_GTP1G2:U83C84_AA A 1 ? A 84 ? A 2 ? A 83 ? 1 B G 2 1_555 B U 83 1_555 B U 3 1_555 B A 82 1_555 0.053 -1.357 3.195 -1.494 6.566 43.329 -2.410 -0.205 2.965 8.829 2.008 43.824 28 AA_G2U3:A82U83_AA A 2 ? A 83 ? A 3 ? A 82 ? 1 B U 3 1_555 B A 82 1_555 B A 4 1_555 B U 81 1_555 0.189 -1.776 2.807 1.704 9.773 29.113 -4.837 -0.098 2.121 18.766 -3.272 30.722 29 AA_U3A4:U81A82_AA A 3 ? A 82 ? A 4 ? A 81 ? 1 B C 7 1_555 B G 77 1_555 B G 8 1_555 B C 76 1_555 -0.124 -0.286 2.432 0.548 10.916 22.019 -3.113 0.413 2.056 26.575 -1.334 24.553 30 AA_C7G8:C76G77_AA A 7 ? A 77 ? A 8 ? A 76 ? 1 B U 13 1_555 B A 41 1_555 B C 15 1_555 B G 40 1_555 0.035 -3.172 6.490 0.393 8.319 38.598 -6.551 0.035 5.712 12.409 -0.587 39.453 31 AA_U13C15:G40A41_AA A 13 ? A 41 ? A 15 ? A 40 ? 1 B C 15 1_555 B G 40 1_555 B U 16 1_555 B G 39 1_555 0.520 -1.462 3.132 -0.757 3.037 35.800 -2.777 -0.945 2.991 4.930 1.228 35.932 32 AA_C15U16:G39G40_AA A 15 ? A 40 ? A 16 ? A 39 ? 1 B U 16 1_555 B G 39 1_555 B G 66 1_555 B C 38 1_555 -4.626 -0.691 3.484 -10.984 3.127 44.653 -1.213 4.762 4.389 4.037 14.183 46.017 33 AA_U16G66:C38G39_AA A 16 ? A 39 ? A 66 ? A 38 ? 1 B A 19 1_555 B G 36 1_555 B C 20 1_555 B G 35 1_555 0.186 -0.950 3.270 -2.217 9.494 62.446 -1.321 -0.274 3.104 9.098 2.124 63.126 34 AA_A19C20:G35G36_AA A 19 ? A 36 ? A 20 ? A 35 ? 1 B C 20 1_555 B G 35 1_555 B C 21 1_555 B G 34 1_555 -0.299 -2.237 3.406 -6.692 13.035 31.157 -5.668 -0.459 2.326 22.757 11.683 34.353 35 AA_C20C21:G34G35_AA A 20 ? A 35 ? A 21 ? A 34 ? 1 B C 21 1_555 B G 34 1_555 B A 22 1_555 B U 33 1_555 -0.898 -1.772 3.062 1.504 11.384 28.743 -5.159 1.927 2.171 21.863 -2.889 30.907 36 AA_C21A22:U33G34_AA A 21 ? A 34 ? A 22 ? A 33 ? 1 B A 22 1_555 B U 33 1_555 B U 23 1_555 B A 32 1_555 -0.497 -1.341 3.490 -6.091 10.684 32.556 -3.913 -0.118 2.960 18.265 10.413 34.742 37 AA_A22U23:A32U33_AA A 22 ? A 33 ? A 23 ? A 32 ? 1 B U 23 1_555 B A 32 1_555 B C 24 1_555 B G 31 1_555 0.455 -1.270 2.742 4.345 5.879 34.626 -2.798 -0.227 2.536 9.744 -7.201 35.366 38 AA_U23C24:G31A32_AA A 23 ? A 32 ? A 24 ? A 31 ? 1 B C 24 1_555 B G 31 1_555 B C 25 1_555 B G 30 1_555 0.353 -1.849 3.418 -2.314 6.810 31.368 -4.535 -1.045 2.929 12.392 4.210 32.162 39 AA_C24C25:G30G31_AA A 24 ? A 31 ? A 25 ? A 30 ? 1 B A 42 1_555 B U 73 1_555 B G 44 1_555 B C 72 1_555 2.097 -1.671 3.122 -7.526 -3.372 63.502 -1.441 -2.282 2.959 -3.189 7.119 63.979 40 AA_A42G44:C72U73_AA A 42 ? A 73 ? A 44 ? A 72 ? 1 B G 44 1_555 B C 72 1_555 B C 45 1_555 B G 71 1_555 0.009 -1.682 3.358 0.741 0.751 38.490 -2.646 0.081 3.325 1.138 -1.125 38.504 41 AA_G44C45:G71C72_AA A 44 ? A 72 ? A 45 ? A 71 ? 1 B C 45 1_555 B G 71 1_555 B C 46 1_555 B G 70 1_555 0.788 -2.146 3.286 3.175 8.792 30.693 -5.356 -0.896 2.652 16.146 -5.830 32.052 42 AA_C45C46:G70G71_AA A 45 ? A 71 ? A 46 ? A 70 ? 1 B C 46 1_555 B G 70 1_555 B U 47 1_555 B G 69 1_555 -0.039 -1.748 3.485 5.089 7.679 40.208 -3.328 0.615 3.087 10.996 -7.287 41.208 43 AA_C46U47:G69G70_AA A 46 ? A 70 ? A 47 ? A 69 ? 1 B U 47 1_555 B G 69 1_555 B G 50 1_555 B C 68 1_555 -3.793 -0.942 3.310 0.659 4.269 47.759 -1.494 4.720 3.170 5.260 -0.812 47.942 44 AA_U47G50:C68G69_AA A 47 ? A 69 ? A 50 ? A 68 ? 1 B G 50 1_555 B C 68 1_555 B G 51 1_555 B C 67 1_555 0.100 -2.485 3.287 1.766 1.356 29.071 -5.229 0.183 3.171 2.696 -3.511 29.154 45 AA_G50G51:C67C68_AA A 50 ? A 68 ? A 51 ? A 67 ? 1 B G 51 1_555 B C 67 1_555 B G 52 1_555 B C 64 1_555 2.860 -1.570 3.136 -5.249 -4.209 51.679 -1.526 -3.584 2.963 -4.805 5.992 52.085 46 AA_G51G52:C64C67_AA A 51 ? A 67 ? A 52 ? A 64 ? 1 B G 52 1_555 B C 64 1_555 B U 53 1_555 B A 63 1_555 0.033 -1.626 3.283 -1.205 3.107 31.168 -3.584 -0.284 3.107 5.761 2.235 31.342 47 AA_G52U53:A63C64_AA A 52 ? A 64 ? A 53 ? A 63 ? 1 B U 53 1_555 B A 63 1_555 B C 54 1_555 B G 62 1_555 0.602 -1.747 3.428 3.864 3.060 34.423 -3.408 -0.397 3.312 5.137 -6.488 34.763 48 AA_U53C54:G62A63_AA A 53 ? A 63 ? A 54 ? A 62 ? 1 B C 54 1_555 B G 62 1_555 B U 55 1_555 B A 61 1_555 -0.703 -2.257 3.640 -2.224 4.223 29.309 -5.358 0.870 3.332 8.277 4.358 29.687 49 AA_C54U55:A61G62_AA A 54 ? A 62 ? A 55 ? A 61 ? 1 B U 55 1_555 B A 61 1_555 B C 56 1_555 B G 60 1_555 0.061 -0.709 3.315 6.006 -3.286 31.136 -0.676 1.014 3.324 -6.030 -11.023 31.862 50 AA_U55C56:G60A61_AA A 55 ? A 61 ? A 56 ? A 60 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number '1 U19 CA179564' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'POTASSIUM ION' K 4 ;2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one ; 4BW 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3IRW _pdbx_initial_refinement_model.details ? #