HEADER RNA 18-FEB-15 4YAZ TITLE 3',3'-CGAMP RIBOSWITCH BOUND WITH 3',3'-CGAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (84-MER); COMPND 3 CHAIN: R, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER; SOURCE 3 ORGANISM_TAXID: 28231; SOURCE 4 EXPRESSION_SYSTEM: IN VITRO TRANSCRIPTION VECTOR PT7-FLUC(DELTAI); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 905932 KEYWDS RIBOSWITCH, 3', 3'-CGAMP, SPINACH, RNA STRUCTURE, C-DI-GMP, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.M.REN,D.J.PATEL,R.K.RAJASHANKAR REVDAT 6 27-SEP-23 4YAZ 1 HETSYN LINK REVDAT 5 04-DEC-19 4YAZ 1 REMARK REVDAT 4 27-SEP-17 4YAZ 1 SOURCE REMARK REVDAT 3 22-JUL-15 4YAZ 1 HETSYN REVDAT 2 22-APR-15 4YAZ 1 JRNL REVDAT 1 15-APR-15 4YAZ 0 JRNL AUTH A.REN,X.C.WANG,C.A.KELLENBERGER,K.R.RAJASHANKAR,R.A.JONES, JRNL AUTH 2 M.C.HAMMOND,D.J.PATEL JRNL TITL STRUCTURAL BASIS FOR MOLECULAR DISCRIMINATION BY A JRNL TITL 2 3',3'-CGAMP SENSING RIBOSWITCH. JRNL REF CELL REP V. 11 1 2015 JRNL REFN ESSN 2211-1247 JRNL PMID 25818298 JRNL DOI 10.1016/J.CELREP.2015.03.004 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 3 NUMBER OF REFLECTIONS : 29171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5137 - 4.4456 0.56 3347 186 0.1561 0.1704 REMARK 3 2 4.4456 - 3.5292 0.51 3093 165 0.1446 0.1821 REMARK 3 3 3.5292 - 3.0832 0.51 3095 152 0.1679 0.2135 REMARK 3 4 3.0832 - 2.8014 0.51 3022 160 0.2615 0.3099 REMARK 3 5 2.8014 - 2.6006 0.50 3010 141 0.3028 0.3857 REMARK 3 6 2.6006 - 2.4473 0.46 2720 159 0.3153 0.3274 REMARK 3 7 2.4473 - 2.3248 0.40 2401 133 0.2964 0.3082 REMARK 3 8 2.3248 - 2.2236 0.35 2086 103 0.2873 0.2971 REMARK 3 9 2.2236 - 2.1380 0.31 1871 110 0.2833 0.3358 REMARK 3 10 2.1380 - 2.0642 0.28 1642 100 0.2929 0.4018 REMARK 3 11 2.0642 - 2.0000 0.24 1400 75 0.3103 0.3869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4176 REMARK 3 ANGLE : 1.202 6480 REMARK 3 CHIRALITY : 0.049 838 REMARK 3 PLANARITY : 0.008 172 REMARK 3 DIHEDRAL : 21.887 2106 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 81.0664 -3.4857 99.0224 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.1556 REMARK 3 T33: 0.1650 T12: -0.0639 REMARK 3 T13: 0.0362 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.9173 L22: 0.4030 REMARK 3 L33: 0.4908 L12: 0.1581 REMARK 3 L13: 0.2803 L23: 0.2405 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: 0.1114 S13: -0.1387 REMARK 3 S21: -0.0820 S22: 0.0290 S23: 0.0078 REMARK 3 S31: -0.0646 S32: 0.0665 S33: 0.0275 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2-6.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32313 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 78.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3IRW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA/K-PHOSPHATE, PH 6.2-6.6, 0.2 REMARK 280 M NACL AND 40-45% PEG400., PH 6.5, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.25850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 224 O HOH A 242 2.14 REMARK 500 O HOH A 230 O HOH A 245 2.19 REMARK 500 O HOH R 256 O HOH R 261 2.19 REMARK 500 O HOH A 216 O HOH A 276 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G R 37 O3' C R 38 P -0.076 REMARK 500 C A 10 O3' A A 11 P -0.072 REMARK 500 A A 48 O3' A A 49 P -0.148 REMARK 500 U A 59 O3' G A 60 P -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GTP R 1 C3' - O3' - P ANGL. DEV. = 18.2 DEGREES REMARK 500 G R 2 O3' - P - O5' ANGL. DEV. = -14.5 DEGREES REMARK 500 G R 2 O3' - P - OP1 ANGL. DEV. = 11.0 DEGREES REMARK 500 GTP A 1 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 C A 10 C2' - C3' - O3' ANGL. DEV. = -18.1 DEGREES REMARK 500 C A 10 N1 - C1' - C2' ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH R 295 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH R 296 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH R 297 DISTANCE = 7.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K R 107 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A R 19 O2' REMARK 620 2 A A 18 O2' 95.7 REMARK 620 3 HOH A 267 O 128.3 108.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG R 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G R 44 OP1 REMARK 620 2 C R 45 OP2 99.9 REMARK 620 3 HOH R 216 O 76.0 173.5 REMARK 620 4 HOH R 232 O 89.2 78.9 105.8 REMARK 620 5 HOH R 259 O 91.1 91.8 83.4 170.5 REMARK 620 6 HOH R 281 O 156.4 99.6 85.6 81.7 101.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K R 105 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A R 48 O4' REMARK 620 2 G R 51 O6 145.0 REMARK 620 3 HOH R 247 O 91.2 102.7 REMARK 620 4 HOH R 248 O 66.7 112.2 143.2 REMARK 620 5 HOH R 284 O 73.6 139.5 82.1 64.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG R 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH R 274 O REMARK 620 2 HOH R 289 O 123.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG R 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH R 276 O REMARK 620 2 HOH R 293 O 104.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 44 OP1 REMARK 620 2 C A 45 OP2 76.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG R 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG R 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG R 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG R 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K R 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4BW R 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K R 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4BW A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide GTP A 1 and G A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YB0 RELATED DB: PDB REMARK 900 RELATED ID: 4YB1 RELATED DB: PDB DBREF 4YAZ R 1 84 PDB 4YAZ 4YAZ 1 84 DBREF 4YAZ A 1 84 PDB 4YAZ 4YAZ 1 84 SEQRES 1 R 84 GTP G U A C A C G A C A A U SEQRES 2 R 84 A C U A A A C C A U C C G SEQRES 3 R 84 C G A G G A U G G G G C G SEQRES 4 R 84 G A A A G C C U A A G G G SEQRES 5 R 84 U C U C C C U G A G A C A SEQRES 6 R 84 G C C G G G C U G C C G A SEQRES 7 R 84 A A U A U C SEQRES 1 A 84 GTP G U A C A C G A C A A U SEQRES 2 A 84 A C U A A A C C A U C C G SEQRES 3 A 84 C G A G G A U G G G G C G SEQRES 4 A 84 G A A A G C C U A A G G G SEQRES 5 A 84 U C U C C C U G A G A C A SEQRES 6 A 84 G C C G G G C U G C C G A SEQRES 7 A 84 A A U A U C HET GTP R 1 32 HET GTP A 1 32 HET MG R 101 1 HET MG R 102 1 HET MG R 103 1 HET MG R 104 1 HET K R 105 1 HET 4BW R 106 45 HET K R 107 1 HET MG A 101 1 HET K A 102 1 HET 4BW A 103 45 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM 4BW 2-AMINO-9-[(2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-9- HETNAM 2 4BW (6-AMINO-9H-PURIN-9-YL)-3,5,10,12-TETRAHYDROXY-5,12- HETNAM 3 4BW DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9, HETNAM 4 4BW 2,8]TETRAOXADIPHOSPHACYCLODODECIN-2-YL]-1,9-DIHYDRO- HETNAM 5 4BW 6H-PURIN-6-ONE HETSYN 4BW 3',3' CGAMP; C-GMP-AMP; C[G(3',5')PA(3',5')P] FORMUL 1 GTP 2(C10 H16 N5 O14 P3) FORMUL 3 MG 5(MG 2+) FORMUL 7 K 3(K 1+) FORMUL 8 4BW 2(C20 H24 N10 O13 P2) FORMUL 13 HOH *179(H2 O) LINK O3' GTP R 1 P G R 2 1555 1555 1.60 LINK O3' GTP A 1 P G A 2 1555 1555 1.60 LINK O2' A R 19 K K R 107 1555 1555 2.62 LINK OP1 G R 44 MG MG R 101 1555 1555 1.98 LINK OP2 C R 45 MG MG R 101 1555 1555 2.13 LINK O4' A R 48 K K R 105 1555 1555 2.84 LINK O6 G R 51 K K R 105 1555 1555 3.30 LINK OP2 A R 82 MG MG R 103 1555 1555 2.21 LINK MG MG R 101 O HOH R 216 1555 1555 2.12 LINK MG MG R 101 O HOH R 232 1555 1555 2.09 LINK MG MG R 101 O HOH R 259 1555 1555 2.06 LINK MG MG R 101 O HOH R 281 1555 1555 2.02 LINK MG MG R 102 O HOH R 274 1555 1555 2.08 LINK MG MG R 102 O HOH R 289 1555 1555 2.09 LINK MG MG R 104 O HOH R 276 1555 1555 2.09 LINK MG MG R 104 O HOH R 293 1555 1555 2.06 LINK K K R 105 O HOH R 247 1555 1555 2.73 LINK K K R 105 O HOH R 248 1555 1555 3.38 LINK K K R 105 O HOH R 284 1555 1555 3.09 LINK K K R 107 O2' A A 18 1555 1555 2.98 LINK K K R 107 O HOH A 267 1555 1555 3.10 LINK OP1 G A 44 MG MG A 101 1555 1555 2.30 LINK OP2 C A 45 MG MG A 101 1555 1555 2.37 SITE 1 AC1 6 G R 44 C R 45 HOH R 216 HOH R 232 SITE 2 AC1 6 HOH R 259 HOH R 281 SITE 1 AC2 3 G R 51 HOH R 274 HOH R 289 SITE 1 AC3 2 U R 81 A R 82 SITE 1 AC4 2 HOH R 276 HOH R 293 SITE 1 AC5 4 A R 48 G R 51 HOH R 247 HOH R 284 SITE 1 AC6 11 G R 8 A R 11 A R 12 A R 14 SITE 2 AC6 11 G R 40 A R 41 A R 42 C R 75 SITE 3 AC6 11 C R 76 HOH R 228 HOH R 239 SITE 1 AC7 4 A A 18 A A 19 HOH A 267 A R 19 SITE 1 AC8 3 U A 16 G A 44 C A 45 SITE 1 AC9 1 C A 58 SITE 1 AD1 11 G A 8 A A 11 A A 12 A A 14 SITE 2 AD1 11 G A 40 A A 41 C A 75 C A 76 SITE 3 AD1 11 HOH A 225 HOH A 233 HOH A 260 SITE 1 AD2 7 U A 3 A A 82 U A 83 C A 84 SITE 2 AD2 7 HOH A 211 HOH A 248 HOH A 252 CRYST1 66.623 50.517 78.657 90.00 90.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015010 0.000000 0.000240 0.00000 SCALE2 0.000000 0.019795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012715 0.00000 HETATM 1 PG GTP R 1 111.294 29.043 84.501 1.00 92.04 P ANISOU 1 PG GTP R 1 12381 12317 10272 -2916 86 931 P HETATM 2 O1G GTP R 1 110.612 29.545 83.270 1.00 90.10 O ANISOU 2 O1G GTP R 1 12177 12107 9951 -2950 63 978 O HETATM 3 O2G GTP R 1 112.780 29.058 84.446 1.00 81.43 O ANISOU 3 O2G GTP R 1 10978 11075 8888 -2997 144 910 O HETATM 4 O3G GTP R 1 110.800 27.805 85.166 1.00 86.66 O ANISOU 4 O3G GTP R 1 11656 11637 9632 -2810 125 841 O HETATM 5 O3B GTP R 1 110.800 30.180 85.470 1.00 86.16 O ANISOU 5 O3B GTP R 1 11704 11423 9609 -2911 2 1003 O HETATM 6 PB GTP R 1 111.845 30.921 86.368 1.00 84.29 P ANISOU 6 PB GTP R 1 11444 11139 9444 -2923 4 993 P HETATM 7 O1B GTP R 1 112.779 31.665 85.503 1.00 69.23 O ANISOU 7 O1B GTP R 1 9549 9255 7500 -3039 -7 1061 O HETATM 8 O2B GTP R 1 111.048 31.638 87.406 1.00 77.97 O ANISOU 8 O2B GTP R 1 10690 10192 8741 -2854 -63 1010 O HETATM 9 O3A GTP R 1 112.626 29.675 86.905 1.00 50.69 O ANISOU 9 O3A GTP R 1 7094 6979 5187 -2888 93 888 O HETATM 10 PA GTP R 1 112.128 28.802 88.065 1.00 42.13 P ANISOU 10 PA GTP R 1 5978 5863 4166 -2771 114 807 P HETATM 11 O1A GTP R 1 112.423 27.460 87.725 1.00 51.31 O ANISOU 11 O1A GTP R 1 7076 7143 5276 -2745 188 730 O HETATM 12 O2A GTP R 1 110.784 29.182 88.349 1.00 39.68 O ANISOU 12 O2A GTP R 1 5734 5440 3902 -2700 48 837 O HETATM 13 O5' GTP R 1 113.097 29.267 89.193 1.00 35.41 O ANISOU 13 O5' GTP R 1 5088 4979 3385 -2771 123 780 O HETATM 14 C5' GTP R 1 114.396 28.792 89.352 1.00 35.58 C ANISOU 14 C5' GTP R 1 5029 5097 3392 -2795 193 717 C HETATM 15 C4' GTP R 1 115.086 29.535 90.485 1.00 35.56 C ANISOU 15 C4' GTP R 1 5008 5034 3468 -2794 180 708 C HETATM 16 O4' GTP R 1 115.147 30.931 90.275 1.00 40.28 O ANISOU 16 O4' GTP R 1 5658 5571 4077 -2869 128 788 O HETATM 17 C3' GTP R 1 114.273 29.502 91.726 1.00 34.35 C ANISOU 17 C3' GTP R 1 4874 4776 3402 -2701 143 686 C HETATM 18 O3' GTP R 1 114.390 28.268 92.363 1.00 45.50 O ANISOU 18 O3' GTP R 1 6228 6226 4832 -2623 189 602 O HETATM 19 C2' GTP R 1 114.808 30.646 92.536 1.00 35.00 C ANISOU 19 C2' GTP R 1 4966 4785 3546 -2743 106 715 C HETATM 20 O2' GTP R 1 116.097 30.364 93.039 1.00 35.19 O ANISOU 20 O2' GTP R 1 4915 4874 3581 -2766 157 661 O HETATM 21 C1' GTP R 1 114.895 31.658 91.431 1.00 36.51 C ANISOU 21 C1' GTP R 1 5206 4975 3692 -2839 76 800 C HETATM 22 N9 GTP R 1 113.588 32.257 91.352 1.00 36.24 N ANISOU 22 N9 GTP R 1 5255 4829 3684 -2807 -1 860 N HETATM 23 C8 GTP R 1 112.736 32.141 90.383 1.00 36.37 C ANISOU 23 C8 GTP R 1 5319 4854 3645 -2810 -22 903 C HETATM 24 N7 GTP R 1 111.655 32.821 90.633 1.00 36.16 N ANISOU 24 N7 GTP R 1 5362 4706 3672 -2772 -99 947 N HETATM 25 C5 GTP R 1 111.798 33.382 91.794 1.00 35.91 C ANISOU 25 C5 GTP R 1 5328 4589 3729 -2744 -127 930 C HETATM 26 C6 GTP R 1 111.001 34.225 92.656 1.00 39.58 C ANISOU 26 C6 GTP R 1 5843 4919 4277 -2700 -202 952 C HETATM 27 O6 GTP R 1 109.891 34.574 92.342 1.00 40.66 O ANISOU 27 O6 GTP R 1 6041 4992 4415 -2676 -258 996 O HETATM 28 N1 GTP R 1 111.503 34.608 93.792 1.00 35.52 N ANISOU 28 N1 GTP R 1 5306 4344 3844 -2681 -214 918 N HETATM 29 C2 GTP R 1 112.687 34.225 94.177 1.00 35.54 C ANISOU 29 C2 GTP R 1 5239 4420 3846 -2707 -153 867 C HETATM 30 N2 GTP R 1 113.076 34.690 95.359 1.00 35.41 N ANISOU 30 N2 GTP R 1 5200 4345 3910 -2691 -168 833 N HETATM 31 N3 GTP R 1 113.464 33.447 93.455 1.00 35.76 N ANISOU 31 N3 GTP R 1 5215 4579 3792 -2749 -80 848 N HETATM 32 C4 GTP R 1 113.086 33.007 92.276 1.00 35.95 C ANISOU 32 C4 GTP R 1 5260 4664 3736 -2768 -66 877 C