HEADER HYDROLASE 18-FEB-15 4YBG TITLE CRYSTAL STRUCTURE OF THE MAEL DOMAIN OF DROSOPHILA MELANOGASTER TITLE 2 MAELSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MAELSTROM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 84-333; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: MAEL, CG11254; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSPOSONS, ENDORIBONUCLEASES, GENE SILENCING, RIBONUCLEASE H-LIKE KEYWDS 2 FOLD, ZINC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MATSUMOTO,R.ISHITANI,H.NISHIMASU,O.NUREKI REVDAT 5 03-APR-24 4YBG 1 REMARK REVDAT 4 20-MAR-24 4YBG 1 REMARK REVDAT 3 05-FEB-20 4YBG 1 SOURCE REMARK REVDAT 2 06-MAY-15 4YBG 1 JRNL REVDAT 1 29-APR-15 4YBG 0 JRNL AUTH N.MATSUMOTO,K.SATO,H.NISHIMASU,Y.NAMBA,K.MIYAKUBI,N.DOHMAE, JRNL AUTH 2 R.ISHITANI,H.SIOMI,M.C.SIOMI,O.NUREKI JRNL TITL CRYSTAL STRUCTURE AND ACTIVITY OF THE ENDORIBONUCLEASE JRNL TITL 2 DOMAIN OF THE PIRNA PATHWAY FACTOR MAELSTROM JRNL REF CELL REP V. 11 366 2015 JRNL REFN ESSN 2211-1247 JRNL PMID 25865890 JRNL DOI 10.1016/J.CELREP.2015.03.030 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.3599 - 3.5609 0.99 2862 153 0.1791 0.2001 REMARK 3 2 3.5609 - 2.8269 1.00 2751 144 0.1937 0.2032 REMARK 3 3 2.8269 - 2.4696 1.00 2698 143 0.1981 0.2137 REMARK 3 4 2.4696 - 2.2439 1.00 2684 141 0.2026 0.2213 REMARK 3 5 2.2439 - 2.0831 1.00 2673 141 0.1867 0.2139 REMARK 3 6 2.0831 - 1.9603 1.00 2650 139 0.1987 0.2199 REMARK 3 7 1.9603 - 1.8621 1.00 2681 141 0.1983 0.2515 REMARK 3 8 1.8621 - 1.7811 1.00 2622 138 0.2067 0.2347 REMARK 3 9 1.7811 - 1.7125 1.00 2653 140 0.2207 0.2560 REMARK 3 10 1.7125 - 1.6534 1.00 2640 139 0.2286 0.2557 REMARK 3 11 1.6534 - 1.6017 0.99 2605 137 0.2519 0.2928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1949 REMARK 3 ANGLE : 1.289 2629 REMARK 3 CHIRALITY : 0.056 297 REMARK 3 PLANARITY : 0.006 331 REMARK 3 DIHEDRAL : 13.508 712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4234 29.7921 15.7455 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.2503 REMARK 3 T33: 0.1503 T12: -0.0154 REMARK 3 T13: 0.0011 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.3122 L22: 3.5468 REMARK 3 L33: 5.2430 L12: -1.0342 REMARK 3 L13: 2.8086 L23: -1.8617 REMARK 3 S TENSOR REMARK 3 S11: -0.1555 S12: 0.2979 S13: 0.2562 REMARK 3 S21: -0.3506 S22: 0.0456 S23: 0.2469 REMARK 3 S31: -0.3755 S32: -0.1348 S33: 0.0909 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1229 19.6069 26.0878 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.1660 REMARK 3 T33: 0.1383 T12: -0.0152 REMARK 3 T13: 0.0053 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 4.8215 L22: 1.4474 REMARK 3 L33: 2.9100 L12: -0.4841 REMARK 3 L13: 1.6696 L23: -0.7917 REMARK 3 S TENSOR REMARK 3 S11: -0.1435 S12: 0.1768 S13: 0.0901 REMARK 3 S21: 0.0308 S22: -0.0467 S23: -0.0144 REMARK 3 S31: -0.1811 S32: 0.3218 S33: 0.0924 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2109 15.1757 38.0035 REMARK 3 T TENSOR REMARK 3 T11: 0.2433 T22: 0.4118 REMARK 3 T33: 0.2110 T12: 0.0151 REMARK 3 T13: -0.0481 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 4.1849 L22: 2.2945 REMARK 3 L33: 2.1812 L12: -0.0735 REMARK 3 L13: -1.1625 L23: -0.9903 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -1.0200 S13: -0.1241 REMARK 3 S21: 0.4656 S22: 0.0627 S23: -0.3737 REMARK 3 S31: 0.1060 S32: 0.9818 S33: -0.0794 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3722 20.1870 16.5408 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: 0.2736 REMARK 3 T33: 0.1583 T12: -0.0100 REMARK 3 T13: 0.0611 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.9958 L22: 3.2032 REMARK 3 L33: 4.1294 L12: -1.8256 REMARK 3 L13: 0.0172 L23: 0.2100 REMARK 3 S TENSOR REMARK 3 S11: 0.1561 S12: 0.6186 S13: -0.1032 REMARK 3 S21: -0.3646 S22: -0.2329 S23: -0.1308 REMARK 3 S31: 0.2054 S32: 0.3360 S33: 0.0812 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0338 27.6638 25.0379 REMARK 3 T TENSOR REMARK 3 T11: 0.2372 T22: 0.3234 REMARK 3 T33: 0.1471 T12: -0.1213 REMARK 3 T13: -0.0212 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 4.6717 L22: 5.2329 REMARK 3 L33: 4.6235 L12: 0.4344 REMARK 3 L13: -1.6340 L23: -1.0329 REMARK 3 S TENSOR REMARK 3 S11: -0.1502 S12: 0.0417 S13: 0.0827 REMARK 3 S21: -0.2213 S22: 0.1051 S23: -0.3134 REMARK 3 S31: -0.4566 S32: 0.8867 S33: 0.0314 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8619 31.0785 19.5365 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.1810 REMARK 3 T33: 0.1789 T12: 0.0113 REMARK 3 T13: 0.0132 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 4.9628 L22: 3.5670 REMARK 3 L33: 3.7506 L12: -2.5810 REMARK 3 L13: 2.4510 L23: -1.1149 REMARK 3 S TENSOR REMARK 3 S11: -0.1746 S12: -0.0138 S13: 0.1215 REMARK 3 S21: 0.0091 S22: 0.2111 S23: 0.4297 REMARK 3 S31: -0.2914 S32: -0.4538 S33: -0.0357 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5871 32.4319 25.8180 REMARK 3 T TENSOR REMARK 3 T11: 0.2695 T22: 0.2612 REMARK 3 T33: 0.4401 T12: -0.0099 REMARK 3 T13: 0.0627 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 5.5973 L22: 4.3471 REMARK 3 L33: 7.0901 L12: 1.7976 REMARK 3 L13: 3.8743 L23: 2.0525 REMARK 3 S TENSOR REMARK 3 S11: -0.2899 S12: 0.0847 S13: 0.6983 REMARK 3 S21: -0.3082 S22: 0.0178 S23: 0.6699 REMARK 3 S31: -0.4531 S32: -0.4347 S33: 0.3446 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9180 12.0999 35.6089 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.2192 REMARK 3 T33: 0.2763 T12: -0.0325 REMARK 3 T13: 0.0678 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 5.9044 L22: 2.9242 REMARK 3 L33: 2.7237 L12: -2.1367 REMARK 3 L13: 1.3959 L23: -0.0052 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: -0.6023 S13: -0.7147 REMARK 3 S21: 0.4184 S22: 0.1511 S23: 0.3981 REMARK 3 S31: 0.2704 S32: -0.1721 S33: -0.1025 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8680 17.1260 23.0638 REMARK 3 T TENSOR REMARK 3 T11: 0.2186 T22: 0.2588 REMARK 3 T33: 0.3456 T12: -0.0382 REMARK 3 T13: -0.0413 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 5.2183 L22: 4.7076 REMARK 3 L33: 2.0995 L12: -0.6042 REMARK 3 L13: 0.5690 L23: -0.0429 REMARK 3 S TENSOR REMARK 3 S11: 0.1165 S12: 0.4608 S13: -0.6330 REMARK 3 S21: -0.5029 S22: -0.0095 S23: 0.9726 REMARK 3 S31: 0.1689 S32: -0.2990 S33: -0.1132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31077 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: THE MAEL DOMAIN SOLVED BY ZN-SAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, AMMONIUM ACETATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.19450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.94600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.94600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.29175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.94600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.94600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.09725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.94600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.94600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.29175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.94600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.94600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.09725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.19450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 79 REMARK 465 PRO A 80 REMARK 465 LEU A 81 REMARK 465 HIS A 82 REMARK 465 MET A 83 REMARK 465 ILE A 156 REMARK 465 ILE A 157 REMARK 465 PHE A 158 REMARK 465 GLY A 159 REMARK 465 GLN A 160 REMARK 465 GLY A 161 REMARK 465 SER A 162 REMARK 465 SER A 228 REMARK 465 ASP A 229 REMARK 465 GLY A 236 REMARK 465 GLU A 237 REMARK 465 GLN A 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 122 CG CD1 CD2 REMARK 470 GLN A 155 CG CD OE1 NE2 REMARK 470 ASP A 163 CG OD1 OD2 REMARK 470 ASP A 230 CG OD1 OD2 REMARK 470 ASP A 231 CG OD1 OD2 REMARK 470 PHE A 232 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 234 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 519 O HOH A 519 8665 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 171 -100.19 -123.75 REMARK 500 ARG A 296 45.24 -106.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 131 OE2 REMARK 620 2 CYS A 288 SG 105.3 REMARK 620 3 HIS A 291 ND1 108.2 103.6 REMARK 620 4 CYS A 300 SG 117.5 114.4 107.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 DBREF 4YBG A 84 333 UNP Q9VNS0 MAEL_DROME 84 333 SEQADV 4YBG GLY A 79 UNP Q9VNS0 EXPRESSION TAG SEQADV 4YBG PRO A 80 UNP Q9VNS0 EXPRESSION TAG SEQADV 4YBG LEU A 81 UNP Q9VNS0 EXPRESSION TAG SEQADV 4YBG HIS A 82 UNP Q9VNS0 EXPRESSION TAG SEQADV 4YBG MET A 83 UNP Q9VNS0 EXPRESSION TAG SEQADV 4YBG SER A 228 UNP Q9VNS0 CYS 228 ENGINEERED MUTATION SEQRES 1 A 255 GLY PRO LEU HIS MET SER LEU MET ASP MET LYS ARG THR SEQRES 2 A 255 ILE GLU ARG LEU VAL LEU ASN ALA LYS MET SER HIS ASP SEQRES 3 A 255 LEU GLU ASN ALA LYS PHE VAL PHE VAL ALA PHE ASN TYR SEQRES 4 A 255 PHE THR LYS ALA LEU THR THR ASP VAL TYR VAL PRO ALA SEQRES 5 A 255 GLU PHE ALA ALA CYS GLU TYR SER LEU LYS GLU GLY ILE SEQRES 6 A 255 ARG SER ILE TYR SER THR MET ILE ASP PRO GLY GLN ILE SEQRES 7 A 255 ILE PHE GLY GLN GLY SER ASP ALA LEU LEU HIS SER SER SEQRES 8 A 255 THR THR HIS ASP LEU PRO LEU PRO PRO ASN ALA LEU GLY SEQRES 9 A 255 GLU LYS ASN MET THR LYS LEU TYR ARG ASN ILE VAL ASP SEQRES 10 A 255 TYR LEU SER LYS CYS GLN GLY LYS GLY LYS THR LEU VAL SEQRES 11 A 255 VAL PHE THR PRO ALA GLU ASN ILE THR MET VAL LYS SER SEQRES 12 A 255 CYS PHE ARG TYR LEU GLU SER ASP ASP ASP PHE ARG ASP SEQRES 13 A 255 GLY GLY GLU LYS ILE GLN VAL PHE ASP ILE GLN TYR LEU SEQRES 14 A 255 LEU PHE ILE LEU LYS LYS GLU VAL MET ASN VAL ALA ASP SEQRES 15 A 255 LEU ASN ASP GLU LYS ILE ASN LYS PHE ALA THR ASP ALA SEQRES 16 A 255 PHE PHE LYS LYS ASP PHE PHE GLU PHE THR ALA GLY ILE SEQRES 17 A 255 ALA CYS GLN TYR HIS GLU ASP ASN ASP ARG THR LYS TYR SEQRES 18 A 255 CYS THR GLN SER MET VAL THR ARG TRP ALA TYR THR PHE SEQRES 19 A 255 THR ASP PHE MET CYS GLY ASP LEU ALA ILE THR VAL GLN SEQRES 20 A 255 PRO GLY LYS HIS ILE PRO ALA GLN HET ZN A 400 1 HET ACT A 401 4 HET EDO A 402 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *82(H2 O) HELIX 1 AA1 SER A 84 SER A 102 1 19 HELIX 2 AA2 ASP A 104 ALA A 108 5 5 HELIX 3 AA3 ALA A 164 THR A 171 1 8 HELIX 4 AA4 ASN A 185 GLY A 202 1 18 HELIX 5 AA5 PRO A 212 GLU A 214 5 3 HELIX 6 AA6 ASN A 215 GLU A 227 1 13 HELIX 7 AA7 ASP A 231 GLY A 235 1 5 HELIX 8 AA8 ILE A 244 ALA A 259 1 16 HELIX 9 AA9 ASN A 267 ASP A 278 1 12 HELIX 10 AB1 CYS A 288 ASP A 295 1 8 HELIX 11 AB2 ARG A 296 TYR A 299 5 4 HELIX 12 AB3 CYS A 300 CYS A 317 1 18 HELIX 13 AB4 GLY A 318 LEU A 320 5 3 SHEET 1 AA1 3 PHE A 110 LYS A 120 0 SHEET 2 AA1 3 TYR A 127 SER A 138 -1 O VAL A 128 N PHE A 118 SHEET 3 AA1 3 GLY A 142 MET A 150 -1 O ARG A 144 N GLU A 136 SHEET 1 AA2 2 LEU A 207 THR A 211 0 SHEET 2 AA2 2 ILE A 239 ASP A 243 1 O GLN A 240 N LEU A 207 LINK OE2 GLU A 131 ZN ZN A 400 1555 1555 2.00 LINK SG CYS A 288 ZN ZN A 400 1555 1555 2.26 LINK ND1 HIS A 291 ZN ZN A 400 1555 1555 2.04 LINK SG CYS A 300 ZN ZN A 400 1555 1555 2.31 CISPEP 1 PRO A 177 PRO A 178 0 4.52 SITE 1 AC1 4 GLU A 131 CYS A 288 HIS A 291 CYS A 300 SITE 1 AC2 3 ASP A 278 TRP A 308 HOH A 537 SITE 1 AC3 5 HIS A 103 ASP A 104 LEU A 105 GLU A 106 SITE 2 AC3 5 ARG A 191 CRYST1 71.892 71.892 88.389 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011314 0.00000