HEADER LIGASE 23-FEB-15 4YE6 TITLE THE CRYSTAL STRUCTURE OF THE INTACT HUMAN GLNRS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUTAMINYL-TRNA SYNTHETASE,GLNRS; COMPND 5 EC: 6.1.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: QARS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS AMINOACYL-TRNA SYNTHETASE, CLASS I AARS, L-GLUTAMINE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OGNJENOVIC,J.WU,J.LING,M.SIMONOVIC REVDAT 6 28-FEB-24 4YE6 1 REMARK REVDAT 5 25-DEC-19 4YE6 1 REMARK REVDAT 4 27-SEP-17 4YE6 1 JRNL REMARK REVDAT 3 04-MAY-16 4YE6 1 JRNL REVDAT 2 24-FEB-16 4YE6 1 JRNL REVDAT 1 17-FEB-16 4YE6 0 JRNL AUTH J.OGNJENOVIC,J.WU,D.MATTHIES,U.BAXA,S.SUBRAMANIAM,J.LING, JRNL AUTH 2 M.SIMONOVIC JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN GLNRS PROVIDES BASIS FOR THE JRNL TITL 2 DEVELOPMENT OF NEUROLOGICAL DISORDERS. JRNL REF NUCLEIC ACIDS RES. V. 44 3420 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 26869582 JRNL DOI 10.1093/NAR/GKW082 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 66515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9936 - 6.7972 0.97 2932 149 0.1808 0.2013 REMARK 3 2 6.7972 - 5.4066 1.00 2871 125 0.2078 0.2420 REMARK 3 3 5.4066 - 4.7265 1.00 2804 147 0.1848 0.1975 REMARK 3 4 4.7265 - 4.2959 1.00 2815 124 0.1657 0.1973 REMARK 3 5 4.2959 - 3.9888 1.00 2800 132 0.1764 0.2024 REMARK 3 6 3.9888 - 3.7542 1.00 2746 158 0.1897 0.2107 REMARK 3 7 3.7542 - 3.5665 1.00 2750 142 0.2056 0.2415 REMARK 3 8 3.5665 - 3.4115 1.00 2750 132 0.2137 0.2214 REMARK 3 9 3.4115 - 3.2803 1.00 2770 146 0.2315 0.2730 REMARK 3 10 3.2803 - 3.1673 1.00 2751 132 0.2236 0.2480 REMARK 3 11 3.1673 - 3.0684 1.00 2699 146 0.2334 0.2695 REMARK 3 12 3.0684 - 2.9808 1.00 2740 142 0.2379 0.2665 REMARK 3 13 2.9808 - 2.9024 1.00 2686 165 0.2409 0.2355 REMARK 3 14 2.9024 - 2.8316 1.00 2752 157 0.2323 0.2671 REMARK 3 15 2.8316 - 2.7673 1.00 2696 133 0.2407 0.3236 REMARK 3 16 2.7673 - 2.7084 1.00 2741 150 0.2541 0.3174 REMARK 3 17 2.7084 - 2.6543 1.00 2705 134 0.2793 0.3040 REMARK 3 18 2.6543 - 2.6042 1.00 2714 140 0.2825 0.3179 REMARK 3 19 2.6042 - 2.5578 1.00 2751 141 0.2860 0.2882 REMARK 3 20 2.5578 - 2.5144 1.00 2688 137 0.2965 0.3089 REMARK 3 21 2.5144 - 2.4739 1.00 2693 139 0.2957 0.3489 REMARK 3 22 2.4739 - 2.4358 1.00 2746 141 0.3133 0.3944 REMARK 3 23 2.4358 - 2.4000 1.00 2666 137 0.3322 0.3529 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5367 REMARK 3 ANGLE : 1.353 7330 REMARK 3 CHIRALITY : 0.055 830 REMARK 3 PLANARITY : 0.007 965 REMARK 3 DIHEDRAL : 13.538 1861 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YE6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.95400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CALCIUM ACETATE, 0.1M TRIS, PH REMARK 280 6.0, 12.5% (W/V) PEG 3,350, 60MM GLY-GLY-GLY, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 166.83950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.99150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 166.83950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.99150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 183 REMARK 465 ASP A 184 REMARK 465 LEU A 185 REMARK 465 GLU A 186 REMARK 465 LYS A 187 REMARK 465 LYS A 188 REMARK 465 PHE A 189 REMARK 465 LYS A 190 REMARK 465 VAL A 191 REMARK 465 ALA A 192 REMARK 465 LYS A 193 REMARK 465 ALA A 194 REMARK 465 ARG A 195 REMARK 465 LEU A 196 REMARK 465 GLU A 197 REMARK 465 GLU A 198 REMARK 465 THR A 199 REMARK 465 ASP A 200 REMARK 465 ARG A 201 REMARK 465 ARG A 202 REMARK 465 THR A 203 REMARK 465 ALA A 204 REMARK 465 LYS A 205 REMARK 465 ASP A 206 REMARK 465 VAL A 207 REMARK 465 VAL A 208 REMARK 465 GLU A 209 REMARK 465 ASN A 210 REMARK 465 GLY A 211 REMARK 465 GLU A 212 REMARK 465 THR A 213 REMARK 465 ALA A 214 REMARK 465 ASP A 215 REMARK 465 GLN A 216 REMARK 465 GLU A 363 REMARK 465 GLU A 364 REMARK 465 LEU A 365 REMARK 465 LYS A 366 REMARK 465 GLY A 367 REMARK 465 HIS A 368 REMARK 465 ASN A 369 REMARK 465 GLU A 459 REMARK 465 PHE A 460 REMARK 465 GLN A 461 REMARK 465 ALA A 585 REMARK 465 LYS A 586 REMARK 465 SER A 587 REMARK 465 LEU A 588 REMARK 465 LEU A 630 REMARK 465 ALA A 631 REMARK 465 TRP A 632 REMARK 465 GLY A 633 REMARK 465 GLN A 634 REMARK 465 PRO A 635 REMARK 465 VAL A 636 REMARK 465 GLY A 637 REMARK 465 LEU A 638 REMARK 465 ALA A 668 REMARK 465 ASP A 669 REMARK 465 ALA A 670 REMARK 465 GLY A 671 REMARK 465 GLU A 672 REMARK 465 LYS A 673 REMARK 465 PRO A 772 REMARK 465 GLY A 773 REMARK 465 LYS A 774 REMARK 465 VAL A 775 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 41 CD OE1 NE2 REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 79 CE NZ REMARK 470 GLU A 92 CD OE1 OE2 REMARK 470 LEU A 99 CG CD1 CD2 REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 ILE A 102 CG1 CG2 CD1 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CD CE NZ REMARK 470 LYS A 163 CD CE NZ REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 LEU A 218 CD1 CD2 REMARK 470 GLU A 227 CD OE1 OE2 REMARK 470 LYS A 233 CE NZ REMARK 470 LYS A 309 CD CE NZ REMARK 470 THR A 370 OG1 CG2 REMARK 470 LYS A 412 CD CE NZ REMARK 470 LYS A 458 CE NZ REMARK 470 ARG A 463 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 486 NE CZ NH1 NH2 REMARK 470 TYR A 491 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 509 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 541 CG1 CG2 REMARK 470 THR A 542 OG1 CG2 REMARK 470 VAL A 543 CG1 CG2 REMARK 470 GLN A 545 CG CD OE1 NE2 REMARK 470 THR A 546 OG1 CG2 REMARK 470 THR A 547 OG1 CG2 REMARK 470 GLU A 549 CG CD OE1 OE2 REMARK 470 LEU A 552 CD1 CD2 REMARK 470 ARG A 558 CG CD NE CZ NH1 NH2 REMARK 470 THR A 564 OG1 CG2 REMARK 470 ARG A 567 CG CD NE CZ NH1 NH2 REMARK 470 MET A 569 CG SD CE REMARK 470 LEU A 572 CG CD1 CD2 REMARK 470 GLU A 573 OE1 OE2 REMARK 470 SER A 574 OG REMARK 470 LEU A 575 CG CD1 CD2 REMARK 470 ARG A 576 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 577 CG1 CG2 REMARK 470 ILE A 578 CG1 CG2 CD1 REMARK 470 ILE A 579 CG1 CG2 CD1 REMARK 470 THR A 580 OG1 CG2 REMARK 470 ASP A 589 CG OD1 OD2 REMARK 470 ILE A 590 CG1 CG2 CD1 REMARK 470 VAL A 592 CG1 CG2 REMARK 470 GLU A 599 CG CD OE1 OE2 REMARK 470 THR A 600 OG1 CG2 REMARK 470 LYS A 601 CG CD CE NZ REMARK 470 PHE A 603 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 605 CG CD OE1 NE2 REMARK 470 PRO A 607 CG CD REMARK 470 PHE A 608 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 610 CG CD REMARK 470 ILE A 611 CG1 CG2 CD1 REMARK 470 VAL A 612 CG1 CG2 REMARK 470 PHE A 613 CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 614 CG1 CG2 CD1 REMARK 470 GLU A 615 CG CD OE1 OE2 REMARK 470 ARG A 616 CG CD NE CZ NH1 NH2 REMARK 470 THR A 617 OG1 CG2 REMARK 470 ASP A 618 CG OD1 OD2 REMARK 470 PHE A 619 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 620 CG CD CE NZ REMARK 470 GLU A 621 CG CD OE1 OE2 REMARK 470 GLU A 622 CG CD OE1 OE2 REMARK 470 PRO A 623 CG CD REMARK 470 GLU A 624 CG CD OE1 OE2 REMARK 470 PRO A 625 CG CD REMARK 470 PHE A 627 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 628 CG CD CE NZ REMARK 470 ARG A 629 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 639 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 640 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 641 OG1 CG2 REMARK 470 TYR A 643 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 644 CG1 CG2 REMARK 470 ILE A 645 CG1 CG2 CD1 REMARK 470 GLU A 646 CG CD OE1 OE2 REMARK 470 LEU A 647 CG CD1 CD2 REMARK 470 GLN A 648 CG CD OE1 NE2 REMARK 470 HIS A 649 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 652 CD CE NZ REMARK 470 SER A 655 OG REMARK 470 CYS A 657 SG REMARK 470 VAL A 658 CG1 CG2 REMARK 470 GLU A 659 CG CD OE1 OE2 REMARK 470 SER A 660 OG REMARK 470 LEU A 661 CG CD1 CD2 REMARK 470 GLU A 662 CG CD OE1 OE2 REMARK 470 VAL A 663 CG1 CG2 REMARK 470 THR A 664 OG1 CG2 REMARK 470 CYS A 665 SG REMARK 470 ARG A 666 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 667 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 674 CG CD REMARK 470 LYS A 675 CG CD CE NZ REMARK 470 PHE A 677 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 678 CG1 CG2 CD1 REMARK 470 VAL A 681 CG1 CG2 REMARK 470 SER A 682 OG REMARK 470 GLN A 683 CG CD OE1 NE2 REMARK 470 LEU A 685 CG CD1 CD2 REMARK 470 MET A 686 SD CE REMARK 470 LEU A 691 CG CD1 CD2 REMARK 470 GLU A 693 CG CD OE1 OE2 REMARK 470 ARG A 694 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 695 CG CD1 CD2 REMARK 470 PHE A 696 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 697 CG CD OE1 NE2 REMARK 470 HIS A 698 ND1 CD2 CE1 NE2 REMARK 470 LYS A 699 CG CD CE NZ REMARK 470 ASN A 700 CG OD1 ND2 REMARK 470 GLU A 702 CG CD OE1 OE2 REMARK 470 ASP A 703 CG OD1 OD2 REMARK 470 THR A 705 OG1 CG2 REMARK 470 GLU A 706 CD OE1 OE2 REMARK 470 VAL A 707 CG1 CG2 REMARK 470 PHE A 711 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 712 CG CD1 CD2 REMARK 470 SER A 713 OG REMARK 470 LEU A 715 CG CD1 CD2 REMARK 470 LEU A 717 CG CD1 CD2 REMARK 470 SER A 719 OG REMARK 470 HIS A 721 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 727 CG CD1 CD2 REMARK 470 VAL A 728 CG1 CG2 REMARK 470 ASP A 729 CG OD1 OD2 REMARK 470 VAL A 732 CG1 CG2 REMARK 470 LEU A 734 CG CD1 CD2 REMARK 470 LYS A 736 CG CD CE NZ REMARK 470 LYS A 740 CG CD CE NZ REMARK 470 ARG A 745 CG CD NE CZ NH1 NH2 REMARK 470 SER A 750 OG REMARK 470 GLN A 757 OE1 NE2 REMARK 470 LYS A 759 CG CD CE NZ REMARK 470 LEU A 760 CD1 CD2 REMARK 470 ARG A 764 NH1 NH2 REMARK 470 VAL A 766 CG1 CG2 REMARK 470 LEU A 768 CG CD1 CD2 REMARK 470 LYS A 769 CG CD CE NZ REMARK 470 GLU A 770 CG CD OE1 OE2 REMARK 470 ASP A 771 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 96 ND1 HIS A 97 1.73 REMARK 500 NH2 ARG A 68 O HIS A 97 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 704 CG PRO A 704 CD 0.205 REMARK 500 GLU A 706 CB GLU A 706 CG 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 24 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO A 610 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 79 8.39 58.66 REMARK 500 HIS A 97 71.84 -155.31 REMARK 500 ASP A 100 -3.32 82.60 REMARK 500 ARG A 141 -127.49 54.00 REMARK 500 ASP A 304 42.17 -107.60 REMARK 500 VAL A 543 -155.16 -132.10 REMARK 500 ASN A 581 -59.15 -135.21 REMARK 500 THR A 600 9.67 -65.06 REMARK 500 ARG A 616 9.25 -69.18 REMARK 500 GLU A 621 -68.41 -99.87 REMARK 500 GLU A 624 -161.40 -166.33 REMARK 500 PHE A 627 -162.28 -168.12 REMARK 500 THR A 641 -46.64 -130.59 REMARK 500 TYR A 643 -151.65 -126.00 REMARK 500 LEU A 647 99.67 -66.05 REMARK 500 LYS A 652 138.19 -173.74 REMARK 500 SER A 655 -84.49 -115.50 REMARK 500 THR A 664 84.33 -161.82 REMARK 500 LYS A 675 -88.01 -114.43 REMARK 500 VAL A 707 61.35 38.78 REMARK 500 SER A 719 -115.75 59.03 REMARK 500 ASP A 724 66.06 65.60 REMARK 500 ALA A 725 70.05 62.09 REMARK 500 VAL A 732 47.65 -91.56 REMARK 500 LEU A 734 31.13 -91.68 REMARK 500 PRO A 753 11.04 -68.85 REMARK 500 GLU A 770 -89.51 -118.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 100 PRO A 101 142.39 REMARK 500 ASN A 581 PHE A 582 -143.75 REMARK 500 PHE A 743 GLU A 744 -147.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YE8 RELATED DB: PDB REMARK 900 RELATED ID: 4YE9 RELATED DB: PDB DBREF 4YE6 A 1 775 UNP P47897 SYQ_HUMAN 1 775 SEQADV 4YE6 HIS A 0 UNP P47897 EXPRESSION TAG SEQRES 1 A 776 HIS MET ALA ALA LEU ASP SER LEU SER LEU PHE THR SER SEQRES 2 A 776 LEU GLY LEU SER GLU GLN LYS ALA ARG GLU THR LEU LYS SEQRES 3 A 776 ASN SER ALA LEU SER ALA GLN LEU ARG GLU ALA ALA THR SEQRES 4 A 776 GLN ALA GLN GLN THR LEU GLY SER THR ILE ASP LYS ALA SEQRES 5 A 776 THR GLY ILE LEU LEU TYR GLY LEU ALA SER ARG LEU ARG SEQRES 6 A 776 ASP THR ARG ARG LEU SER PHE LEU VAL SER TYR ILE ALA SEQRES 7 A 776 SER LYS LYS ILE HIS THR GLU PRO GLN LEU SER ALA ALA SEQRES 8 A 776 LEU GLU TYR VAL ARG SER HIS PRO LEU ASP PRO ILE ASP SEQRES 9 A 776 THR VAL ASP PHE GLU ARG GLU CYS GLY VAL GLY VAL ILE SEQRES 10 A 776 VAL THR PRO GLU GLN ILE GLU GLU ALA VAL GLU ALA ALA SEQRES 11 A 776 ILE ASN ARG HIS ARG PRO GLN LEU LEU VAL GLU ARG TYR SEQRES 12 A 776 HIS PHE ASN MET GLY LEU LEU MET GLY GLU ALA ARG ALA SEQRES 13 A 776 VAL LEU LYS TRP ALA ASP GLY LYS MET ILE LYS ASN GLU SEQRES 14 A 776 VAL ASP MET GLN VAL LEU HIS LEU LEU GLY PRO LYS LEU SEQRES 15 A 776 GLU ALA ASP LEU GLU LYS LYS PHE LYS VAL ALA LYS ALA SEQRES 16 A 776 ARG LEU GLU GLU THR ASP ARG ARG THR ALA LYS ASP VAL SEQRES 17 A 776 VAL GLU ASN GLY GLU THR ALA ASP GLN THR LEU SER LEU SEQRES 18 A 776 MET GLU GLN LEU ARG GLY GLU ALA LEU LYS PHE HIS LYS SEQRES 19 A 776 PRO GLY GLU ASN TYR LYS THR PRO GLY TYR VAL VAL THR SEQRES 20 A 776 PRO HIS THR MET ASN LEU LEU LYS GLN HIS LEU GLU ILE SEQRES 21 A 776 THR GLY GLY GLN VAL ARG THR ARG PHE PRO PRO GLU PRO SEQRES 22 A 776 ASN GLY ILE LEU HIS ILE GLY HIS ALA LYS ALA ILE ASN SEQRES 23 A 776 PHE ASN PHE GLY TYR ALA LYS ALA ASN ASN GLY ILE CYS SEQRES 24 A 776 PHE LEU ARG PHE ASP ASP THR ASN PRO GLU LYS GLU GLU SEQRES 25 A 776 ALA LYS PHE PHE THR ALA ILE CYS ASP MET VAL ALA TRP SEQRES 26 A 776 LEU GLY TYR THR PRO TYR LYS VAL THR TYR ALA SER ASP SEQRES 27 A 776 TYR PHE ASP GLN LEU TYR ALA TRP ALA VAL GLU LEU ILE SEQRES 28 A 776 ARG ARG GLY LEU ALA TYR VAL CYS HIS GLN ARG GLY GLU SEQRES 29 A 776 GLU LEU LYS GLY HIS ASN THR LEU PRO SER PRO TRP ARG SEQRES 30 A 776 ASP ARG PRO MET GLU GLU SER LEU LEU LEU PHE GLU ALA SEQRES 31 A 776 MET ARG LYS GLY LYS PHE SER GLU GLY GLU ALA THR LEU SEQRES 32 A 776 ARG MET LYS LEU VAL MET GLU ASP GLY LYS MET ASP PRO SEQRES 33 A 776 VAL ALA TYR ARG VAL LYS TYR THR PRO HIS HIS ARG THR SEQRES 34 A 776 GLY ASP LYS TRP CYS ILE TYR PRO THR TYR ASP TYR THR SEQRES 35 A 776 HIS CYS LEU CYS ASP SER ILE GLU HIS ILE THR HIS SER SEQRES 36 A 776 LEU CYS THR LYS GLU PHE GLN ALA ARG ARG SER SER TYR SEQRES 37 A 776 PHE TRP LEU CYS ASN ALA LEU ASP VAL TYR CYS PRO VAL SEQRES 38 A 776 GLN TRP GLU TYR GLY ARG LEU ASN LEU HIS TYR ALA VAL SEQRES 39 A 776 VAL SER LYS ARG LYS ILE LEU GLN LEU VAL ALA THR GLY SEQRES 40 A 776 ALA VAL ARG ASP TRP ASP ASP PRO ARG LEU PHE THR LEU SEQRES 41 A 776 THR ALA LEU ARG ARG ARG GLY PHE PRO PRO GLU ALA ILE SEQRES 42 A 776 ASN ASN PHE CYS ALA ARG VAL GLY VAL THR VAL ALA GLN SEQRES 43 A 776 THR THR MET GLU PRO HIS LEU LEU GLU ALA CYS VAL ARG SEQRES 44 A 776 ASP VAL LEU ASN ASP THR ALA PRO ARG ALA MET ALA VAL SEQRES 45 A 776 LEU GLU SER LEU ARG VAL ILE ILE THR ASN PHE PRO ALA SEQRES 46 A 776 ALA LYS SER LEU ASP ILE GLN VAL PRO ASN PHE PRO ALA SEQRES 47 A 776 ASP GLU THR LYS GLY PHE HIS GLN VAL PRO PHE ALA PRO SEQRES 48 A 776 ILE VAL PHE ILE GLU ARG THR ASP PHE LYS GLU GLU PRO SEQRES 49 A 776 GLU PRO GLY PHE LYS ARG LEU ALA TRP GLY GLN PRO VAL SEQRES 50 A 776 GLY LEU ARG HIS THR GLY TYR VAL ILE GLU LEU GLN HIS SEQRES 51 A 776 VAL VAL LYS GLY PRO SER GLY CYS VAL GLU SER LEU GLU SEQRES 52 A 776 VAL THR CYS ARG ARG ALA ASP ALA GLY GLU LYS PRO LYS SEQRES 53 A 776 ALA PHE ILE HIS TRP VAL SER GLN PRO LEU MET CYS GLU SEQRES 54 A 776 VAL ARG LEU TYR GLU ARG LEU PHE GLN HIS LYS ASN PRO SEQRES 55 A 776 GLU ASP PRO THR GLU VAL PRO GLY GLY PHE LEU SER ASP SEQRES 56 A 776 LEU ASN LEU ALA SER LEU HIS VAL VAL ASP ALA ALA LEU SEQRES 57 A 776 VAL ASP CYS SER VAL ALA LEU ALA LYS PRO PHE ASP LYS SEQRES 58 A 776 PHE GLN PHE GLU ARG LEU GLY TYR PHE SER VAL ASP PRO SEQRES 59 A 776 ASP SER HIS GLN GLY LYS LEU VAL PHE ASN ARG THR VAL SEQRES 60 A 776 THR LEU LYS GLU ASP PRO GLY LYS VAL FORMUL 2 HOH *237(H2 O) HELIX 1 AA1 HIS A 0 LEU A 4 5 5 HELIX 2 AA2 ASP A 5 LEU A 13 1 9 HELIX 3 AA3 SER A 16 ASN A 26 1 11 HELIX 4 AA4 ASN A 26 THR A 43 1 18 HELIX 5 AA5 ASP A 49 LEU A 63 1 15 HELIX 6 AA6 ASP A 65 ARG A 67 5 3 HELIX 7 AA7 ARG A 68 SER A 78 1 11 HELIX 8 AA8 THR A 83 ARG A 95 1 13 HELIX 9 AA9 ASP A 103 CYS A 111 1 9 HELIX 10 AB1 THR A 118 ARG A 141 1 24 HELIX 11 AB2 TYR A 142 ASN A 145 5 4 HELIX 12 AB3 MET A 146 ALA A 155 1 10 HELIX 13 AB4 ASP A 161 GLY A 178 1 18 HELIX 14 AB5 SER A 219 LEU A 224 1 6 HELIX 15 AB6 ARG A 225 LYS A 230 1 6 HELIX 16 AB7 GLU A 236 THR A 240 5 5 HELIX 17 AB8 HIS A 248 GLY A 261 1 14 HELIX 18 AB9 HIS A 277 ASN A 294 1 18 HELIX 19 AC1 GLU A 311 LEU A 325 1 15 HELIX 20 AC2 TYR A 338 ARG A 352 1 15 HELIX 21 AC3 PRO A 379 LYS A 392 1 14 HELIX 22 AC4 THR A 437 GLU A 449 1 13 HELIX 23 AC5 ARG A 463 LEU A 474 1 12 HELIX 24 AC6 SER A 495 THR A 505 1 11 HELIX 25 AC7 THR A 518 ARG A 525 1 8 HELIX 26 AC8 PRO A 528 GLY A 540 1 13 HELIX 27 AC9 PRO A 550 ALA A 565 1 16 HELIX 28 AD1 ASP A 598 LYS A 601 5 4 SHEET 1 AA1 3 ARG A 265 PHE A 268 0 SHEET 2 AA1 3 ILE A 297 PHE A 302 1 O PHE A 299 N THR A 266 SHEET 3 AA1 3 LYS A 331 TYR A 334 1 O THR A 333 N LEU A 300 SHEET 1 AA2 4 ALA A 355 CYS A 358 0 SHEET 2 AA2 4 THR A 401 MET A 404 -1 O ARG A 403 N TYR A 356 SHEET 3 AA2 4 VAL A 416 VAL A 420 -1 O ALA A 417 N LEU A 402 SHEET 4 AA2 4 ILE A 434 PRO A 436 -1 O TYR A 435 N ARG A 419 SHEET 1 AA3 2 HIS A 453 THR A 457 0 SHEET 2 AA3 2 VAL A 480 TYR A 484 1 O TYR A 484 N CYS A 456 SHEET 1 AA4 2 LEU A 487 LEU A 489 0 SHEET 2 AA4 2 THR A 546 MET A 548 1 O MET A 548 N ASN A 488 SHEET 1 AA5 7 ARG A 567 ALA A 568 0 SHEET 2 AA5 7 LYS A 740 PHE A 743 1 O GLN A 742 N ALA A 568 SHEET 3 AA5 7 GLY A 747 VAL A 751 -1 O PHE A 749 N PHE A 741 SHEET 4 AA5 7 VAL A 761 VAL A 766 -1 O VAL A 766 N TYR A 748 SHEET 5 AA5 7 LEU A 685 TYR A 692 1 N ARG A 690 O PHE A 762 SHEET 6 AA5 7 ALA A 726 VAL A 728 -1 O VAL A 728 N LEU A 685 SHEET 7 AA5 7 ALA A 570 VAL A 571 -1 N VAL A 571 O LEU A 727 SHEET 1 AA6 6 ARG A 567 ALA A 568 0 SHEET 2 AA6 6 LYS A 740 PHE A 743 1 O GLN A 742 N ALA A 568 SHEET 3 AA6 6 GLY A 747 VAL A 751 -1 O PHE A 749 N PHE A 741 SHEET 4 AA6 6 VAL A 761 VAL A 766 -1 O VAL A 766 N TYR A 748 SHEET 5 AA6 6 LEU A 685 TYR A 692 1 N ARG A 690 O PHE A 762 SHEET 6 AA6 6 LEU A 720 VAL A 722 -1 O HIS A 721 N LEU A 691 SHEET 1 AA7 2 SER A 574 ARG A 576 0 SHEET 2 AA7 2 PHE A 613 GLU A 615 -1 O ILE A 614 N LEU A 575 SHEET 1 AA8 3 ILE A 578 ILE A 579 0 SHEET 2 AA8 3 LEU A 661 VAL A 663 1 O LEU A 661 N ILE A 578 SHEET 3 AA8 3 LEU A 647 VAL A 650 -1 N GLN A 648 O GLU A 662 SHEET 1 AA9 2 VAL A 592 PRO A 593 0 SHEET 2 AA9 2 PHE A 603 HIS A 604 -1 O HIS A 604 N VAL A 592 CRYST1 333.679 57.983 86.123 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.002997 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011611 0.00000