HEADER TRANSFERASE 24-FEB-15 4YEK TITLE X-RAY STRUCTURE OF THE THYMIDINE PHOSPHORYLASE FROM SALMONELLA TITLE 2 TYPHIMURIUM IN COMPLEX WITH THYMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE PHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TDRPASE; COMPND 5 EC: 2.4.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: DEOA, STM4568; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THYMIDINE PHOSPHORYLASE, NUCLEOSIDE, METABOLISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.V.BALAEV,A.A.LASHKOV,A.G.GABDULKHAKOV,C.BETZEL,A.M.MIKHAILOV REVDAT 4 10-JAN-24 4YEK 1 REMARK REVDAT 3 13-SEP-17 4YEK 1 REMARK SITE ATOM REVDAT 2 09-MAR-16 4YEK 1 JRNL REVDAT 1 02-MAR-16 4YEK 0 JRNL AUTH V.V.BALAEV,A.A.LASHKOV,A.G.GABDULKHAKOV,M.V.DONTSOVA, JRNL AUTH 2 T.A.SEREGINA,A.S.MIRONOV,C.BETZEL,A.M.MIKHAILOV JRNL TITL STRUCTURAL INVESTIGATION OF THE THYMIDINE PHOSPHORYLASE FROM JRNL TITL 2 SALMONELLA TYPHIMURIUM IN THE UNLIGANDED STATE AND ITS JRNL TITL 3 COMPLEXES WITH THYMIDINE AND URIDINE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 224 2016 JRNL REFN ESSN 2053-230X JRNL PMID 26919527 JRNL DOI 10.1107/S2053230X1600162X REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 64691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0233 - 7.2373 0.94 2556 166 0.1398 0.1428 REMARK 3 2 7.2373 - 5.7504 0.95 2597 135 0.1579 0.1751 REMARK 3 3 5.7504 - 5.0252 0.95 2657 152 0.1479 0.1979 REMARK 3 4 5.0252 - 4.5665 0.97 2647 136 0.1259 0.1562 REMARK 3 5 4.5665 - 4.2396 0.96 2663 100 0.1348 0.1497 REMARK 3 6 4.2396 - 3.9899 0.96 2632 102 0.1428 0.2443 REMARK 3 7 3.9899 - 3.7903 0.96 2659 128 0.1577 0.1958 REMARK 3 8 3.7903 - 3.6254 0.99 2716 114 0.1533 0.1753 REMARK 3 9 3.6254 - 3.4860 0.97 2617 180 0.1695 0.2249 REMARK 3 10 3.4860 - 3.3657 0.98 2689 162 0.1806 0.2668 REMARK 3 11 3.3657 - 3.2605 0.98 2724 138 0.1953 0.2540 REMARK 3 12 3.2605 - 3.1674 0.97 2640 164 0.2056 0.2367 REMARK 3 13 3.1674 - 3.0840 0.99 2671 150 0.2186 0.2442 REMARK 3 14 3.0840 - 3.0088 0.98 2684 162 0.2389 0.3020 REMARK 3 15 3.0088 - 2.9404 0.99 2714 138 0.2445 0.3040 REMARK 3 16 2.9404 - 2.8779 0.99 2674 174 0.2440 0.3125 REMARK 3 17 2.8779 - 2.8203 0.97 2687 116 0.2678 0.2857 REMARK 3 18 2.8203 - 2.7671 0.99 2703 134 0.2812 0.3530 REMARK 3 19 2.7671 - 2.7177 0.97 2679 148 0.2928 0.2877 REMARK 3 20 2.7177 - 2.6717 0.99 2699 144 0.3051 0.3912 REMARK 3 21 2.6717 - 2.6286 1.00 2728 138 0.3175 0.3987 REMARK 3 22 2.6286 - 2.5881 0.97 2646 155 0.3396 0.3709 REMARK 3 23 2.5881 - 2.5501 0.99 2735 138 0.3622 0.4356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6811 REMARK 3 ANGLE : 1.325 9211 REMARK 3 CHIRALITY : 0.049 1062 REMARK 3 PLANARITY : 0.006 1184 REMARK 3 DIHEDRAL : 15.545 2462 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64691 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 39.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4XR5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE, 1.6 M AMSO4, PH 9.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 95.45950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 95.45950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.85900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 95.45950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 95.45950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.85900 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 95.45950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 95.45950 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.85900 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 95.45950 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 95.45950 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.85900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 119 CG REMARK 480 GLU A 412 CD REMARK 480 ARG B 397 CZ REMARK 480 GLU B 440 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 202 OG1 THR B 240 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 36 OG SER B 35 1556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 2 50.71 -96.31 REMARK 500 ASP A 50 -167.99 56.96 REMARK 500 LEU A 117 177.77 60.66 REMARK 500 ASN A 252 -77.63 -115.45 REMARK 500 TYR A 435 -123.10 -107.05 REMARK 500 ASP B 50 -171.52 66.84 REMARK 500 THR B 94 -37.57 -36.81 REMARK 500 SER B 113 -163.04 -115.31 REMARK 500 ASP B 148 -71.36 -85.24 REMARK 500 ALA B 161 62.15 34.82 REMARK 500 ASN B 252 -83.50 -111.88 REMARK 500 LYS B 291 -70.84 -68.68 REMARK 500 ASP B 292 -164.43 -119.19 REMARK 500 GLN B 320 40.78 -94.59 REMARK 500 SER B 374 5.60 84.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 2 LEU A 3 143.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THM A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THM A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THM B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THM B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XR5 RELATED DB: PDB REMARK 900 4XR5 CONTAINS THE SAME PROTEIN IN THE UNLIGANDED STATE. DBREF 4YEK A 1 440 UNP Q7CP66 TYPH_SALTY 1 440 DBREF 4YEK B 1 440 UNP Q7CP66 TYPH_SALTY 1 440 SEQRES 1 A 440 MET PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS ARG ASP SEQRES 2 A 440 GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE PHE ILE SEQRES 3 A 440 ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY GLN ILE SEQRES 4 A 440 ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP MET THR SEQRES 5 A 440 MET PRO GLU ARG VAL SER LEU THR MET ALA MET ARG ASP SEQRES 6 A 440 SER GLY THR VAL LEU ASP TRP LYS SER LEU ASN LEU ASN SEQRES 7 A 440 GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY VAL GLY SEQRES 8 A 440 ASP VAL THR SER LEU MET LEU GLY PRO MET VAL ALA ALA SEQRES 9 A 440 CYS GLY GLY TYR VAL PRO MET ILE SER GLY ARG GLY LEU SEQRES 10 A 440 GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU ALA ILE SEQRES 11 A 440 PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG PHE ARG SEQRES 12 A 440 GLU ILE ILE GLN ASP VAL GLY VAL ALA ILE ILE GLY GLN SEQRES 13 A 440 THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE TYR ALA SEQRES 14 A 440 THR ARG ASP ILE THR ALA THR VAL ASP SER ILE PRO LEU SEQRES 15 A 440 ILE THR GLY SER ILE LEU ALA LYS LYS LEU ALA GLU GLY SEQRES 16 A 440 LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SER GLY SEQRES 17 A 440 ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA LEU ALA SEQRES 18 A 440 GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY VAL ARG SEQRES 19 A 440 THR THR ALA LEU LEU THR ASP MET ASN GLN VAL LEU ALA SEQRES 20 A 440 SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU ALA VAL SEQRES 21 A 440 GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG LEU PHE SEQRES 22 A 440 ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU ILE SER SEQRES 23 A 440 GLY GLN LEU ALA LYS ASP ASP ALA GLU ALA ARG ALA LYS SEQRES 24 A 440 LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA GLU VAL SEQRES 25 A 440 PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO SER ASP SEQRES 26 A 440 PHE VAL GLU ASN TYR ASP LYS TYR LEU PRO THR ALA MET SEQRES 27 A 440 LEU SER LYS ALA VAL TYR ALA ASP THR GLU GLY PHE ILE SEQRES 28 A 440 SER ALA MET ASP THR ARG ALA LEU GLY MET ALA VAL VAL SEQRES 29 A 440 SER MET GLY GLY GLY ARG ARG GLN ALA SER ASP THR ILE SEQRES 30 A 440 ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG LEU GLY SEQRES 31 A 440 ASP SER ILE ASP GLY GLN ARG PRO LEU ALA VAL ILE HIS SEQRES 32 A 440 ALA LYS ASP GLU ALA SER TRP GLN GLU ALA ALA LYS ALA SEQRES 33 A 440 VAL LYS ALA ALA ILE ILE LEU ASP ASP LYS ALA PRO ALA SEQRES 34 A 440 SER THR PRO SER VAL TYR ARG ARG ILE THR GLU SEQRES 1 B 440 MET PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS ARG ASP SEQRES 2 B 440 GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE PHE ILE SEQRES 3 B 440 ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY GLN ILE SEQRES 4 B 440 ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP MET THR SEQRES 5 B 440 MET PRO GLU ARG VAL SER LEU THR MET ALA MET ARG ASP SEQRES 6 B 440 SER GLY THR VAL LEU ASP TRP LYS SER LEU ASN LEU ASN SEQRES 7 B 440 GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY VAL GLY SEQRES 8 B 440 ASP VAL THR SER LEU MET LEU GLY PRO MET VAL ALA ALA SEQRES 9 B 440 CYS GLY GLY TYR VAL PRO MET ILE SER GLY ARG GLY LEU SEQRES 10 B 440 GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU ALA ILE SEQRES 11 B 440 PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG PHE ARG SEQRES 12 B 440 GLU ILE ILE GLN ASP VAL GLY VAL ALA ILE ILE GLY GLN SEQRES 13 B 440 THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE TYR ALA SEQRES 14 B 440 THR ARG ASP ILE THR ALA THR VAL ASP SER ILE PRO LEU SEQRES 15 B 440 ILE THR GLY SER ILE LEU ALA LYS LYS LEU ALA GLU GLY SEQRES 16 B 440 LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SER GLY SEQRES 17 B 440 ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA LEU ALA SEQRES 18 B 440 GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY VAL ARG SEQRES 19 B 440 THR THR ALA LEU LEU THR ASP MET ASN GLN VAL LEU ALA SEQRES 20 B 440 SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU ALA VAL SEQRES 21 B 440 GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG LEU PHE SEQRES 22 B 440 ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU ILE SER SEQRES 23 B 440 GLY GLN LEU ALA LYS ASP ASP ALA GLU ALA ARG ALA LYS SEQRES 24 B 440 LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA GLU VAL SEQRES 25 B 440 PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO SER ASP SEQRES 26 B 440 PHE VAL GLU ASN TYR ASP LYS TYR LEU PRO THR ALA MET SEQRES 27 B 440 LEU SER LYS ALA VAL TYR ALA ASP THR GLU GLY PHE ILE SEQRES 28 B 440 SER ALA MET ASP THR ARG ALA LEU GLY MET ALA VAL VAL SEQRES 29 B 440 SER MET GLY GLY GLY ARG ARG GLN ALA SER ASP THR ILE SEQRES 30 B 440 ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG LEU GLY SEQRES 31 B 440 ASP SER ILE ASP GLY GLN ARG PRO LEU ALA VAL ILE HIS SEQRES 32 B 440 ALA LYS ASP GLU ALA SER TRP GLN GLU ALA ALA LYS ALA SEQRES 33 B 440 VAL LYS ALA ALA ILE ILE LEU ASP ASP LYS ALA PRO ALA SEQRES 34 B 440 SER THR PRO SER VAL TYR ARG ARG ILE THR GLU HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET THM A 507 17 HET THM A 508 17 HET PGE A 509 10 HET EDO A 510 4 HET EDO A 511 4 HET GOL A 512 6 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HET THM B 505 17 HET THM B 506 17 HET EDO B 507 4 HETNAM SO4 SULFATE ION HETNAM THM THYMIDINE HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 10(O4 S 2-) FORMUL 9 THM 4(C10 H14 N2 O5) FORMUL 11 PGE C6 H14 O4 FORMUL 12 EDO 3(C2 H6 O2) FORMUL 14 GOL C3 H8 O3 FORMUL 22 HOH *86(H2 O) HELIX 1 AA1 LEU A 3 ASP A 13 1 11 HELIX 2 AA2 SER A 18 ASP A 31 1 14 HELIX 3 AA3 SER A 35 ASP A 50 1 16 HELIX 4 AA4 THR A 52 SER A 66 1 15 HELIX 5 AA5 TRP A 72 ASN A 76 5 5 HELIX 6 AA6 VAL A 93 CYS A 105 1 13 HELIX 7 AA7 GLY A 122 GLU A 128 1 7 HELIX 8 AA8 ASP A 138 VAL A 149 1 12 HELIX 9 AA9 PRO A 162 ASP A 172 1 11 HELIX 10 AB1 SER A 179 ALA A 193 1 15 HELIX 11 AB2 THR A 213 ALA A 231 1 19 HELIX 12 AB3 ASN A 252 GLY A 265 1 14 HELIX 13 AB4 ASN A 269 GLY A 287 1 19 HELIX 14 AB5 ASP A 292 ASN A 306 1 15 HELIX 15 AB6 GLY A 307 GLN A 320 1 14 HELIX 16 AB7 ASN A 329 LEU A 334 1 6 HELIX 17 AB8 ASP A 355 MET A 366 1 12 HELIX 18 AB9 ASP A 406 ALA A 420 1 15 HELIX 19 AC1 LEU B 3 ASP B 13 1 11 HELIX 20 AC2 SER B 18 ASP B 31 1 14 HELIX 21 AC3 SER B 35 ASP B 50 1 16 HELIX 22 AC4 THR B 52 ASP B 65 1 14 HELIX 23 AC5 TRP B 72 ASN B 76 5 5 HELIX 24 AC6 THR B 94 CYS B 105 1 12 HELIX 25 AC7 GLY B 122 GLU B 128 1 7 HELIX 26 AC8 ASP B 138 VAL B 149 1 12 HELIX 27 AC9 ALA B 161 ASP B 172 1 12 HELIX 28 AD1 SER B 179 GLU B 194 1 16 HELIX 29 AD2 THR B 213 ALA B 231 1 19 HELIX 30 AD3 ASN B 252 GLY B 265 1 14 HELIX 31 AD4 ASN B 269 GLY B 287 1 19 HELIX 32 AD5 ASP B 292 ASN B 306 1 15 HELIX 33 AD6 GLY B 307 GLN B 320 1 14 HELIX 34 AD7 ASN B 329 LEU B 334 1 6 HELIX 35 AD8 ASP B 355 MET B 366 1 12 HELIX 36 AD9 ASP B 406 ALA B 420 1 15 SHEET 1 AA1 4 VAL A 82 SER A 86 0 SHEET 2 AA1 4 ALA A 198 VAL A 205 1 O ASP A 202 N HIS A 85 SHEET 3 AA1 4 ARG A 234 ASP A 241 1 O ARG A 234 N LEU A 199 SHEET 4 AA1 4 VAL A 434 ILE A 438 -1 O TYR A 435 N LEU A 239 SHEET 1 AA2 2 VAL A 109 ILE A 112 0 SHEET 2 AA2 2 VAL A 151 ILE A 154 1 O ILE A 154 N MET A 111 SHEET 1 AA3 4 ALA A 250 GLY A 251 0 SHEET 2 AA3 4 GLY A 382 THR A 384 -1 O PHE A 383 N ALA A 250 SHEET 3 AA3 4 ALA A 400 ALA A 404 -1 O HIS A 403 N GLY A 382 SHEET 4 AA3 4 LEU A 339 VAL A 343 -1 N LEU A 339 O ALA A 404 SHEET 1 AA4 3 SER A 392 ILE A 393 0 SHEET 2 AA4 3 GLY A 349 MET A 354 -1 N GLY A 349 O ILE A 393 SHEET 3 AA4 3 ILE A 421 ASP A 424 -1 O ASP A 424 N PHE A 350 SHEET 1 AA5 4 VAL B 82 SER B 86 0 SHEET 2 AA5 4 ALA B 198 VAL B 205 1 O ASP B 202 N HIS B 85 SHEET 3 AA5 4 ARG B 234 ASP B 241 1 O LEU B 238 N MET B 201 SHEET 4 AA5 4 VAL B 434 ILE B 438 -1 O TYR B 435 N LEU B 239 SHEET 1 AA6 2 VAL B 109 ILE B 112 0 SHEET 2 AA6 2 VAL B 151 ILE B 154 1 O ALA B 152 N MET B 111 SHEET 1 AA7 4 ALA B 250 GLY B 251 0 SHEET 2 AA7 4 GLY B 382 THR B 384 -1 O PHE B 383 N ALA B 250 SHEET 3 AA7 4 ALA B 400 ALA B 404 -1 O VAL B 401 N THR B 384 SHEET 4 AA7 4 LEU B 339 VAL B 343 -1 N LYS B 341 O ILE B 402 SHEET 1 AA8 3 SER B 392 ILE B 393 0 SHEET 2 AA8 3 GLY B 349 MET B 354 -1 N GLY B 349 O ILE B 393 SHEET 3 AA8 3 ILE B 421 ASP B 424 -1 O ILE B 422 N SER B 352 SITE 1 AC1 6 ALA A 175 THR A 176 VAL A 177 ASP A 178 SITE 2 AC1 6 ARG B 9 ARG B 12 SITE 1 AC2 7 GLN A 5 ARG A 9 ARG A 12 ALA B 175 SITE 2 AC2 7 THR B 176 VAL B 177 ASP B 178 SITE 1 AC3 3 ARG A 271 ARG A 388 HOH A 602 SITE 1 AC4 2 HIS A 15 ALA A 16 SITE 1 AC5 2 ARG A 23 ASN A 27 SITE 1 AC6 2 ASP A 292 ASP A 293 SITE 1 AC7 5 THR A 87 ARG A 171 VAL A 177 SER A 186 SITE 2 AC7 5 PHE A 210 SITE 1 AC8 10 SER A 248 SER A 249 ARG A 257 GLU A 258 SITE 2 AC8 10 GLN A 261 TYR A 267 THR A 384 ASP A 385 SITE 3 AC8 10 ARG A 436 ARG A 437 SITE 1 AC9 5 TYR A 214 GLU A 215 GLU A 218 PHE A 273 SITE 2 AC9 5 GLN A 301 SITE 1 AD1 3 ASP A 138 ARG A 141 LYS A 321 SITE 1 AD2 4 GLU A 328 ASN A 329 TYR A 330 ASP A 331 SITE 1 AD3 5 ARG A 115 ASP A 375 THR A 376 ARG B 56 SITE 2 AD3 5 ALA B 219 SITE 1 AD4 7 LYS B 84 SER B 86 SER B 95 SER B 113 SITE 2 AD4 7 THR B 123 HOH B 615 HOH B 602 SITE 1 AD5 3 TYR B 267 PRO B 270 ARG B 388 SITE 1 AD6 3 PRO B 270 ARG B 271 ARG B 388 SITE 1 AD7 2 ARG B 23 ASN B 27 SITE 1 AD8 7 SER B 248 SER B 249 GLU B 258 GLN B 261 SITE 2 AD8 7 TYR B 267 THR B 384 ASP B 385 SITE 1 AD9 9 HIS B 85 SER B 86 THR B 87 TYR B 168 SITE 2 AD9 9 ARG B 171 VAL B 177 SER B 186 LYS B 190 SITE 3 AD9 9 PHE B 210 SITE 1 AE1 2 ARG B 268 GLN B 301 CRYST1 190.919 190.919 57.718 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017326 0.00000