HEADER SUGAR BINDING PROTEIN 24-FEB-15 4YEP TITLE L4B DOMAIN OF HUMAN LAMININ ALPHA-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMININ SUBUNIT ALPHA-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: L4B DOMAIN, UNP RESIDUES 1181-1362; COMPND 5 SYNONYM: LAMININ M CHAIN,LAMININ-12 SUBUNIT ALPHA,LAMININ-2 SUBUNIT COMPND 6 ALPHA,LAMININ-4 SUBUNIT ALPHA,MEROSIN HEAVY CHAIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LAMA2, LAMM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469006; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMAL-C2 KEYWDS CARBOHYDRATE BINDING FOLD, LAMININ, EXTRACELLULAR MATRIX, EPHRIN KEYWDS 2 RECEPTOR, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.TOOT,Y.GAT,D.FASS REVDAT 3 08-MAY-24 4YEP 1 REMARK REVDAT 2 22-JUL-15 4YEP 1 JRNL REVDAT 1 27-MAY-15 4YEP 0 JRNL AUTH T.MORAN,Y.GAT,D.FASS JRNL TITL LAMININ L4 DOMAIN STRUCTURE RESEMBLES ADHESION MODULES IN JRNL TITL 2 EPHRIN RECEPTOR AND OTHER TRANSMEMBRANE GLYCOPROTEINS. JRNL REF FEBS J. V. 282 2746 2015 JRNL REFN ISSN 1742-464X JRNL PMID 25962468 JRNL DOI 10.1111/FEBS.13319 REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 110147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.040 REMARK 3 FREE R VALUE TEST SET COUNT : 7756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.8978 - 3.6971 1.00 3701 269 0.1318 0.1391 REMARK 3 2 3.6971 - 2.9345 1.00 3518 276 0.1120 0.1481 REMARK 3 3 2.9345 - 2.5636 1.00 3503 269 0.1118 0.1331 REMARK 3 4 2.5636 - 2.3292 1.00 3472 252 0.1021 0.1319 REMARK 3 5 2.3292 - 2.1623 1.00 3418 290 0.0993 0.1347 REMARK 3 6 2.1623 - 2.0348 1.00 3420 252 0.0960 0.1214 REMARK 3 7 2.0348 - 1.9329 1.00 3427 273 0.0976 0.1402 REMARK 3 8 1.9329 - 1.8487 1.00 3446 250 0.1031 0.1394 REMARK 3 9 1.8487 - 1.7775 1.00 3403 275 0.1036 0.1524 REMARK 3 10 1.7775 - 1.7162 1.00 3384 285 0.1017 0.1533 REMARK 3 11 1.7162 - 1.6625 1.00 3368 271 0.1037 0.1535 REMARK 3 12 1.6625 - 1.6150 1.00 3411 270 0.1046 0.1511 REMARK 3 13 1.6150 - 1.5725 1.00 3427 241 0.1130 0.1676 REMARK 3 14 1.5725 - 1.5341 1.00 3380 272 0.1092 0.1502 REMARK 3 15 1.5341 - 1.4992 1.00 3374 254 0.1188 0.1735 REMARK 3 16 1.4992 - 1.4673 1.00 3427 236 0.1301 0.1847 REMARK 3 17 1.4673 - 1.4380 1.00 3379 244 0.1393 0.2094 REMARK 3 18 1.4380 - 1.4108 1.00 3384 264 0.1521 0.2062 REMARK 3 19 1.4108 - 1.3856 1.00 3415 235 0.1585 0.2061 REMARK 3 20 1.3856 - 1.3622 1.00 3402 235 0.1650 0.2245 REMARK 3 21 1.3622 - 1.3402 1.00 3420 236 0.1683 0.2155 REMARK 3 22 1.3402 - 1.3196 1.00 3337 247 0.1807 0.2503 REMARK 3 23 1.3196 - 1.3002 1.00 3399 288 0.1904 0.2255 REMARK 3 24 1.3002 - 1.2818 1.00 3297 275 0.2013 0.2538 REMARK 3 25 1.2818 - 1.2645 1.00 3417 229 0.2023 0.2587 REMARK 3 26 1.2645 - 1.2481 1.00 3371 267 0.2077 0.2489 REMARK 3 27 1.2481 - 1.2325 1.00 3388 260 0.2192 0.2530 REMARK 3 28 1.2325 - 1.2176 1.00 3342 254 0.2271 0.2487 REMARK 3 29 1.2176 - 1.2035 1.00 3392 237 0.2396 0.2897 REMARK 3 30 1.2035 - 1.1900 1.00 3369 250 0.2393 0.2602 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 3454 REMARK 3 ANGLE : 1.904 4707 REMARK 3 CHIRALITY : 0.128 516 REMARK 3 PLANARITY : 0.012 595 REMARK 3 DIHEDRAL : 13.276 1367 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110147 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 52.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 20% ETHYLENE GLYCOL, 50 REMARK 280 MM SODIUM PHOSPHATE PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.85500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1642 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 1188 O2 EDO A 1411 1.10 REMARK 500 HH11 ARG A 1301 HO2 EDO A 1406 1.19 REMARK 500 HO1 EDO A 1410 HO2 EDO B 1404 1.28 REMARK 500 HH22 ARG A 1277 O HOH A 1502 1.42 REMARK 500 HD1 HIS A 1214 O HOH A 1748 1.43 REMARK 500 H GLY A 1266 O HOH A 1760 1.51 REMARK 500 HZ3 LYS A 1252 O HOH A 1504 1.52 REMARK 500 O1 EDO A 1410 HO2 EDO B 1404 1.59 REMARK 500 HH11 ARG B 1285 O HOH B 1717 1.59 REMARK 500 OE2 GLU B 1200 HD21 ASN B 1271 1.59 REMARK 500 O HOH B 1656 O HOH B 1717 1.62 REMARK 500 OD1 ASN A 1347 O HOH A 1743 1.75 REMARK 500 O HOH A 1713 O HOH A 1729 1.85 REMARK 500 N LEU A 1188 O2 EDO A 1411 1.90 REMARK 500 O HOH A 1731 O HOH A 1739 1.90 REMARK 500 O HOH A 1745 O HOH A 1746 1.90 REMARK 500 O HOH A 1755 O HOH A 1760 1.90 REMARK 500 O HOH A 1533 O HOH A 1534 1.91 REMARK 500 O HOH A 1503 O HOH A 1625 1.93 REMARK 500 O HOH A 1601 O HOH A 1603 1.93 REMARK 500 O HOH B 1506 O HOH B 1587 1.98 REMARK 500 O HOH A 1527 O HOH A 1623 2.00 REMARK 500 O HOH A 1656 O HOH A 1737 2.00 REMARK 500 O HOH B 1506 O HOH B 1584 2.01 REMARK 500 O HOH A 1511 O HOH A 1623 2.02 REMARK 500 O HOH B 1694 O HOH B 1716 2.05 REMARK 500 O HOH A 1716 O HOH A 1732 2.06 REMARK 500 ND1 HIS B 1290 O HOH B 1716 2.07 REMARK 500 O HOH B 1527 O HOH B 1549 2.07 REMARK 500 O LYS A 1208 O HOH A 1759 2.07 REMARK 500 O HOH A 1716 O HOH B 1719 2.07 REMARK 500 OG1 THR A 1300 O HOH A 1752 2.09 REMARK 500 O HOH B 1519 O HOH B 1574 2.10 REMARK 500 O HOH B 1619 O HOH B 1659 2.10 REMARK 500 O HOH A 1718 O HOH A 1731 2.10 REMARK 500 O HOH A 1547 O HOH A 1621 2.12 REMARK 500 OG1 THR A 1187 O HOH A 1756 2.12 REMARK 500 NH2 ARG A 1277 O HOH A 1502 2.13 REMARK 500 O HOH B 1587 O HOH B 1588 2.13 REMARK 500 NZ LYS B 1208 OE1 GLU B 1226 2.13 REMARK 500 O HOH A 1649 O HOH B 1629 2.14 REMARK 500 O2 EDO A 1402 O HOH A 1744 2.14 REMARK 500 O HOH A 1602 O HOH A 1616 2.14 REMARK 500 NZ LYS A 1189 O HOH A 1703 2.14 REMARK 500 O HOH A 1745 O HOH A 1755 2.16 REMARK 500 O HOH A 1605 O HOH A 1741 2.16 REMARK 500 O HOH A 1661 O HOH A 1757 2.16 REMARK 500 O1 EDO A 1410 O2 EDO B 1404 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1504 O HOH A 1592 2555 1.96 REMARK 500 O HOH A 1509 O HOH A 1628 2555 1.99 REMARK 500 O HOH A 1505 O HOH A 1639 1554 2.08 REMARK 500 O2 EDO A 1408 O2 EDO A 1410 2555 2.09 REMARK 500 OE2 GLU A 1305 O HOH B 1608 1556 2.11 REMARK 500 OD2 ASP A 1222 OE2 GLU B 1231 3454 2.14 REMARK 500 O HOH A 1516 O HOH B 1533 3455 2.15 REMARK 500 O HOH A 1598 O HOH A 1609 1556 2.16 REMARK 500 O HOH A 1610 O HOH B 1581 3454 2.18 REMARK 500 O HOH A 1717 O HOH B 1531 1556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A1239 CG GLU A1239 CD 0.095 REMARK 500 GLU A1327 CD GLU A1327 OE1 0.083 REMARK 500 ARG A1350 CD ARG A1350 NE -0.108 REMARK 500 SER A1352 CB SER A1352 OG -0.138 REMARK 500 GLN B1192 CG GLN B1192 CD 0.139 REMARK 500 GLU B1260 CD GLU B1260 OE1 0.107 REMARK 500 GLU B1327 CD GLU B1327 OE2 -0.082 REMARK 500 LYS B1342 CE LYS B1342 NZ 0.155 REMARK 500 SER B1352 CB SER B1352 OG -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1222 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 GLU A1239 OE1 - CD - OE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A1289 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A1326 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A1350 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 SER A1352 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG B1183 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU B1188 CB - CG - CD1 ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG B1301 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B1301 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1184 -169.08 -161.13 REMARK 500 ASP A1335 86.60 -154.25 REMARK 500 THR B1184 -162.45 -160.28 REMARK 500 THR B1282 -1.95 76.38 REMARK 500 ASP B1335 88.39 -153.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1717 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B1666 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B1671 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B1676 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B1695 DISTANCE = 6.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1404 DBREF 4YEP A 1181 1362 UNP P24043 LAMA2_HUMAN 1181 1362 DBREF 4YEP B 1181 1362 UNP P24043 LAMA2_HUMAN 1181 1362 SEQADV 4YEP GLY A 1178 UNP P24043 EXPRESSION TAG SEQADV 4YEP ALA A 1179 UNP P24043 EXPRESSION TAG SEQADV 4YEP PHE A 1180 UNP P24043 EXPRESSION TAG SEQADV 4YEP GLY B 1178 UNP P24043 EXPRESSION TAG SEQADV 4YEP ALA B 1179 UNP P24043 EXPRESSION TAG SEQADV 4YEP PHE B 1180 UNP P24043 EXPRESSION TAG SEQRES 1 A 185 GLY ALA PHE LEU ILE ARG THR TRP VAL THR LEU LYS ALA SEQRES 2 A 185 GLU GLN THR ILE LEU PRO LEU VAL ASP GLU ALA LEU GLN SEQRES 3 A 185 HIS THR THR THR LYS GLY ILE VAL PHE GLN HIS PRO GLU SEQRES 4 A 185 ILE VAL ALA HIS MET ASP LEU MET ARG GLU ASP LEU HIS SEQRES 5 A 185 LEU GLU PRO PHE TYR TRP LYS LEU PRO GLU GLN PHE GLU SEQRES 6 A 185 GLY LYS LYS LEU MET ALA TYR GLY GLY LYS LEU LYS TYR SEQRES 7 A 185 ALA ILE TYR PHE GLU ALA ARG GLU GLU THR GLY PHE SER SEQRES 8 A 185 THR TYR ASN PRO GLN VAL ILE ILE ARG GLY GLY THR PRO SEQRES 9 A 185 THR HIS ALA ARG ILE ILE VAL ARG HIS MET ALA ALA PRO SEQRES 10 A 185 LEU ILE GLY GLN LEU THR ARG HIS GLU ILE GLU MET THR SEQRES 11 A 185 GLU LYS GLU TRP LYS TYR TYR GLY ASP ASP PRO ARG VAL SEQRES 12 A 185 HIS ARG THR VAL THR ARG GLU ASP PHE LEU ASP ILE LEU SEQRES 13 A 185 TYR ASP ILE HIS TYR ILE LEU ILE LYS ALA THR TYR GLY SEQRES 14 A 185 ASN PHE MET ARG GLN SER ARG ILE SER GLU ILE SER MET SEQRES 15 A 185 GLU VAL ALA SEQRES 1 B 185 GLY ALA PHE LEU ILE ARG THR TRP VAL THR LEU LYS ALA SEQRES 2 B 185 GLU GLN THR ILE LEU PRO LEU VAL ASP GLU ALA LEU GLN SEQRES 3 B 185 HIS THR THR THR LYS GLY ILE VAL PHE GLN HIS PRO GLU SEQRES 4 B 185 ILE VAL ALA HIS MET ASP LEU MET ARG GLU ASP LEU HIS SEQRES 5 B 185 LEU GLU PRO PHE TYR TRP LYS LEU PRO GLU GLN PHE GLU SEQRES 6 B 185 GLY LYS LYS LEU MET ALA TYR GLY GLY LYS LEU LYS TYR SEQRES 7 B 185 ALA ILE TYR PHE GLU ALA ARG GLU GLU THR GLY PHE SER SEQRES 8 B 185 THR TYR ASN PRO GLN VAL ILE ILE ARG GLY GLY THR PRO SEQRES 9 B 185 THR HIS ALA ARG ILE ILE VAL ARG HIS MET ALA ALA PRO SEQRES 10 B 185 LEU ILE GLY GLN LEU THR ARG HIS GLU ILE GLU MET THR SEQRES 11 B 185 GLU LYS GLU TRP LYS TYR TYR GLY ASP ASP PRO ARG VAL SEQRES 12 B 185 HIS ARG THR VAL THR ARG GLU ASP PHE LEU ASP ILE LEU SEQRES 13 B 185 TYR ASP ILE HIS TYR ILE LEU ILE LYS ALA THR TYR GLY SEQRES 14 B 185 ASN PHE MET ARG GLN SER ARG ILE SER GLU ILE SER MET SEQRES 15 B 185 GLU VAL ALA HET EDO A1401 10 HET EDO A1402 10 HET EDO A1403 10 HET EDO A1404 10 HET EDO A1405 10 HET EDO A1406 10 HET EDO A1407 10 HET EDO A1408 10 HET EDO A1409 10 HET EDO A1410 10 HET EDO A1411 10 HET EDO B1401 10 HET EDO B1402 10 HET EDO B1403 10 HET EDO B1404 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 15(C2 H6 O2) FORMUL 18 HOH *480(H2 O) HELIX 1 AA1 ASP A 1222 GLU A 1231 5 10 HELIX 2 AA2 PRO A 1238 GLU A 1242 5 5 HELIX 3 AA3 LYS A 1245 TYR A 1249 5 5 HELIX 4 AA4 THR A 1325 ASP A 1335 1 11 HELIX 5 AA5 ASP B 1222 GLU B 1231 5 10 HELIX 6 AA6 PRO B 1238 GLU B 1242 5 5 HELIX 7 AA7 LYS B 1245 TYR B 1249 5 5 HELIX 8 AA8 THR B 1325 ASP B 1335 1 11 SHEET 1 AA1 4 THR A1184 VAL A1186 0 SHEET 2 AA1 4 ASN A1347 VAL A1361 -1 O MET A1359 N VAL A1186 SHEET 3 AA1 4 GLU A1216 HIS A1220 -1 N ALA A1219 O SER A1352 SHEET 4 AA1 4 ILE A1210 GLN A1213 -1 N VAL A1211 O VAL A1218 SHEET 1 AA2 4 THR A1184 VAL A1186 0 SHEET 2 AA2 4 ASN A1347 VAL A1361 -1 O MET A1359 N VAL A1186 SHEET 3 AA2 4 LYS A1252 GLU A1263 -1 N LYS A1254 O SER A1358 SHEET 4 AA2 4 THR A1300 GLU A1305 -1 O ILE A1304 N LEU A1253 SHEET 1 AA3 7 THR A1205 THR A1206 0 SHEET 2 AA3 7 LEU A1197 ASP A1199 -1 N LEU A1197 O THR A1206 SHEET 3 AA3 7 PHE A1233 LYS A1236 -1 O TYR A1234 N VAL A1198 SHEET 4 AA3 7 ILE A1336 LYS A1342 -1 O ILE A1341 N TRP A1235 SHEET 5 AA3 7 VAL A1274 GLY A1278 -1 N ARG A1277 O HIS A1337 SHEET 6 AA3 7 ARG A1285 ARG A1289 -1 O ILE A1287 N ILE A1276 SHEET 7 AA3 7 LYS A1312 TYR A1313 -1 O LYS A1312 N VAL A1288 SHEET 1 AA4 4 THR B1184 THR B1187 0 SHEET 2 AA4 4 GLN B1351 VAL B1361 -1 O MET B1359 N VAL B1186 SHEET 3 AA4 4 GLU B1216 HIS B1220 -1 N ALA B1219 O SER B1352 SHEET 4 AA4 4 ILE B1210 GLN B1213 -1 N GLN B1213 O GLU B1216 SHEET 1 AA5 4 THR B1184 THR B1187 0 SHEET 2 AA5 4 GLN B1351 VAL B1361 -1 O MET B1359 N VAL B1186 SHEET 3 AA5 4 LYS B1252 GLU B1260 -1 N LYS B1254 O SER B1358 SHEET 4 AA5 4 THR B1300 GLU B1305 -1 O ILE B1304 N LEU B1253 SHEET 1 AA6 7 THR B1205 THR B1206 0 SHEET 2 AA6 7 LEU B1197 ASP B1199 -1 N LEU B1197 O THR B1206 SHEET 3 AA6 7 PHE B1233 LYS B1236 -1 O TYR B1234 N VAL B1198 SHEET 4 AA6 7 ILE B1336 LYS B1342 -1 O ILE B1341 N TRP B1235 SHEET 5 AA6 7 VAL B1274 GLY B1278 -1 N ARG B1277 O HIS B1337 SHEET 6 AA6 7 ARG B1285 ARG B1289 -1 O ILE B1287 N ILE B1276 SHEET 7 AA6 7 LYS B1312 TYR B1313 -1 O LYS B1312 N VAL B1288 CISPEP 1 HIS A 1214 PRO A 1215 0 7.55 CISPEP 2 HIS A 1214 PRO A 1215 0 3.99 CISPEP 3 GLU A 1231 PRO A 1232 0 5.44 CISPEP 4 HIS B 1214 PRO B 1215 0 9.47 CISPEP 5 GLU B 1231 PRO B 1232 0 1.17 CISPEP 6 GLU B 1231 PRO B 1232 0 1.50 SITE 1 AC1 8 THR A1269 GLN A1273 MET A1291 ALA A1292 SITE 2 AC1 8 ALA A1293 LYS A1342 HOH A1674 HOH A1746 SITE 1 AC2 8 ARG A1183 THR A1184 TRP A1185 GLN A1298 SITE 2 AC2 8 HOH A1690 HOH A1744 GLU B1356 EDO B1403 SITE 1 AC3 10 PHE A1212 PRO A1215 ILE A1217 SER A1355 SITE 2 AC3 10 GLU A1356 EDO A1409 HOH A1591 HOH A1695 SITE 3 AC3 10 ARG B1183 HOH B1621 SITE 1 AC4 6 LYS A1252 LYS A1254 ARG A1301 GLU A1360 SITE 2 AC4 6 HOH A1578 HOH A1739 SITE 1 AC5 7 GLU A1200 ALA A1201 LEU A1202 ILE A1286 SITE 2 AC5 7 TYR A1314 TYR A1338 HOH A1665 SITE 1 AC6 8 TRP A1185 LYS A1254 LEU A1299 THR A1300 SITE 2 AC6 8 ARG A1301 EDO A1408 HOH A1515 HOH A1535 SITE 1 AC7 7 LEU A1299 ARG A1301 EDO A1408 EDO A1410 SITE 2 AC7 7 HOH A1533 HOH A1534 EDO B1404 SITE 1 AC8 7 TRP A1185 LEU A1299 SER A1358 EDO A1406 SITE 2 AC8 7 EDO A1407 EDO A1410 HOH A1587 SITE 1 AC9 9 SER A1355 GLU A1356 ILE A1357 EDO A1403 SITE 2 AC9 9 EDO A1410 EDO A1411 HOH A1591 HOH A1695 SITE 3 AC9 9 ARG B1183 SITE 1 AD1 7 GLU A1356 EDO A1407 EDO A1408 EDO A1409 SITE 2 AD1 7 HOH A1534 HOH A1535 EDO B1404 SITE 1 AD2 5 THR A1187 LEU A1188 ILE A1357 EDO A1409 SITE 2 AD2 5 THR B1184 SITE 1 AD3 11 ARG A1183 GLN B1192 PRO B1215 ILE B1217 SITE 2 AD3 11 SER B1355 GLU B1356 HOH B1614 HOH B1615 SITE 3 AD3 11 HOH B1706 HOH B1718 HOH B1719 SITE 1 AD4 7 GLN B1203 HIS B1204 THR B1205 ALA B1292 SITE 2 AD4 7 ALA B1293 HOH B1530 HOH B1534 SITE 1 AD5 8 THR A1184 GLN A1298 EDO A1402 HOH A1690 SITE 2 AD5 8 HOH A1696 TRP B1185 THR B1187 HOH B1545 SITE 1 AD6 5 EDO A1407 EDO A1410 ILE B1182 ARG B1183 SITE 2 AD6 5 TRP B1185 CRYST1 57.710 131.510 44.850 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017328 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022297 0.00000