data_4YEX # _entry.id 4YEX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YEX pdb_00004yex 10.2210/pdb4yex/pdb WWPDB D_1000207342 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4YEW PDB . unspecified 4YEY PDB . unspecified 4YF0 PDB . unspecified 4YFH PDB . unspecified 4YFT PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YEX _pdbx_database_status.recvd_initial_deposition_date 2015-02-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hammel, M.' 1 'Reyes, F.E.' 2 'Parpana, R.' 3 'Tainer, J.A.' 4 'Adhya, S.' 5 'Amlanjyoti, D.' 6 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2 _citation.language ? _citation.page_first e1600650 _citation.page_last e1600650 _citation.title 'HU multimerization shift controls nucleoid compaction.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.1600650 _citation.pdbx_database_id_PubMed 27482541 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hammel, M.' 1 ? primary 'Amlanjyoti, D.' 2 ? primary 'Reyes, F.E.' 3 ? primary 'Chen, J.H.' 4 ? primary 'Parpana, R.' 5 ? primary 'Tang, H.Y.' 6 ? primary 'Larabell, C.A.' 7 ? primary 'Tainer, J.A.' 8 ? primary 'Adhya, S.' 9 0000-0002-8663-6178 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 114.700 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 4YEX _cell.details ? _cell.formula_units_Z ? _cell.length_a 105.958 _cell.length_a_esd ? _cell.length_b 49.951 _cell.length_b_esd ? _cell.length_c 62.633 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA-binding protein HU-alpha' 9549.979 2 ? ? ? ? 2 polymer syn 'synthetic DNA strand' 4307.780 1 ? ? ? ? 3 polymer syn 'synthetic DNA strand' 4292.769 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name HU-2,NS2 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFV SGKALKDAVK ; ;MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFV SGKALKDAVK ; A,C ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DT)' CCCCCCCCCCCCCCT B ? 3 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)' CCCCCCCCCCCCCCC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 LYS n 1 4 THR n 1 5 GLN n 1 6 LEU n 1 7 ILE n 1 8 ASP n 1 9 VAL n 1 10 ILE n 1 11 ALA n 1 12 GLU n 1 13 LYS n 1 14 ALA n 1 15 GLU n 1 16 LEU n 1 17 SER n 1 18 LYS n 1 19 THR n 1 20 GLN n 1 21 ALA n 1 22 LYS n 1 23 ALA n 1 24 ALA n 1 25 LEU n 1 26 GLU n 1 27 SER n 1 28 THR n 1 29 LEU n 1 30 ALA n 1 31 ALA n 1 32 ILE n 1 33 THR n 1 34 GLU n 1 35 SER n 1 36 LEU n 1 37 LYS n 1 38 GLU n 1 39 GLY n 1 40 ASP n 1 41 ALA n 1 42 VAL n 1 43 GLN n 1 44 LEU n 1 45 VAL n 1 46 GLY n 1 47 PHE n 1 48 GLY n 1 49 THR n 1 50 PHE n 1 51 LYS n 1 52 VAL n 1 53 ASN n 1 54 HIS n 1 55 ARG n 1 56 ALA n 1 57 GLU n 1 58 ARG n 1 59 THR n 1 60 GLY n 1 61 ARG n 1 62 ASN n 1 63 PRO n 1 64 GLN n 1 65 THR n 1 66 GLY n 1 67 LYS n 1 68 GLU n 1 69 ILE n 1 70 LYS n 1 71 ILE n 1 72 ALA n 1 73 ALA n 1 74 ALA n 1 75 ASN n 1 76 VAL n 1 77 PRO n 1 78 ALA n 1 79 PHE n 1 80 VAL n 1 81 SER n 1 82 GLY n 1 83 LYS n 1 84 ALA n 1 85 LEU n 1 86 LYS n 1 87 ASP n 1 88 ALA n 1 89 VAL n 1 90 LYS n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DC n 2 5 DC n 2 6 DC n 2 7 DC n 2 8 DC n 2 9 DC n 2 10 DC n 2 11 DC n 2 12 DC n 2 13 DC n 2 14 DC n 2 15 DT n 3 1 DC n 3 2 DC n 3 3 DC n 3 4 DC n 3 5 DC n 3 6 DC n 3 7 DC n 3 8 DC n 3 9 DC n 3 10 DC n 3 11 DC n 3 12 DC n 3 13 DC n 3 14 DC n 3 15 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 90 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene hupA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 15 'Escherichia coli' ? 562 ? 3 1 sample 1 15 'Escherichia coli' ? 562 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP DBHA_ECO57 P0ACF2 ? 1 ;MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFV SGKALKDAVK ; 1 2 PDB 4YEX 4YEX ? 2 ? 1 3 PDB 4YEX 4YEX ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YEX A 1 ? 90 ? P0ACF2 1 ? 90 ? 1 90 2 2 4YEX B 1 ? 15 ? 4YEX 6 ? 20 ? 6 20 3 3 4YEX D 1 ? 15 ? 4YEX 101 ? 115 ? 101 115 4 1 4YEX C 1 ? 90 ? P0ACF2 1 ? 90 ? 1 90 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YEX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.72 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris pH 5.5, 20% PEG 3350, 0.2M NH4F' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 93.15 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details Q315R _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-01-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 12.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 12.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4YEX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.199 _reflns.d_resolution_low 56.902 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 5028 _reflns.number_obs 5028 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.300 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 36802 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.199 _reflns_shell.d_res_low 3.210 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.301 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.574 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.64 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 13.5814 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -7.8428 _refine.aniso_B[2][2] -20.4690 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 6.8875 _refine.B_iso_max 188.240 _refine.B_iso_mean 130.6753 _refine.B_iso_min 77.310 _refine.correlation_coeff_Fo_to_Fc 0.9400 _refine.correlation_coeff_Fo_to_Fc_free 0.9206 _refine.details ;The asymmetric unit of the crystal contains multiple, out-of-register duplex positions, such that backbones superimpose, but base identity differs. The density is an average of all nucleotides, and the DNA chain was built accordingly. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YEX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.2000 _refine.ls_d_res_low 56.9000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5023 _refine.ls_number_reflns_R_free 232 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.4100 _refine.ls_percent_reflns_R_free 4.6200 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2205 _refine.ls_R_factor_R_free 0.2626 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2185 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1MUL _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI 0.4700 _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 4YEX _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.932 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1035 _refine_hist.pdbx_number_atoms_nucleic_acid 571 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1606 _refine_hist.d_res_high 3.2000 _refine_hist.d_res_low 56.9000 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 518 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? 30 ? t_trig_c_planes 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 175 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 1670 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 238 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 1716 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.011 ? 1670 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 1.120 ? 2354 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 1.980 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 23.570 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.2000 _refine_ls_shell.d_res_low 3.5800 _refine_ls_shell.number_reflns_all 1418 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.number_reflns_R_work 1356 _refine_ls_shell.percent_reflns_obs 99.4100 _refine_ls_shell.percent_reflns_R_free 4.3700 _refine_ls_shell.R_factor_all 0.2394 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2484 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2389 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 4YEX _struct.title HUaa-19bp _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YEX _struct_keywords.text 'HU-DNA, transcription, pathogenicity, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 2 ? ALA A 14 ? ASN A 2 ALA A 14 1 ? 13 HELX_P HELX_P2 AA2 SER A 17 ? GLU A 38 ? SER A 17 GLU A 38 1 ? 22 HELX_P HELX_P3 AA3 GLY A 82 ? LYS A 90 ? GLY A 82 LYS A 90 1 ? 9 HELX_P HELX_P4 AA4 ASN D 2 ? ALA D 14 ? ASN C 2 ALA C 14 1 ? 13 HELX_P HELX_P5 AA5 SER D 17 ? GLU D 38 ? SER C 17 GLU C 38 1 ? 22 HELX_P HELX_P6 AA6 GLY D 82 ? LYS D 90 ? GLY C 82 LYS C 90 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DC 11 N4 ? ? B DC 9 D DC 111 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog2 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DC 10 N3 ? ? B DC 10 D DC 110 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog3 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DC 7 N3 ? ? B DC 13 D DC 107 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 42 ? LEU A 44 ? VAL A 42 LEU A 44 AA1 2 GLY A 48 ? ASN A 53 ? GLY A 48 ASN A 53 AA1 3 VAL A 76 ? SER A 81 ? VAL A 76 SER A 81 AA2 1 VAL D 42 ? LEU D 44 ? VAL C 42 LEU C 44 AA2 2 GLY D 48 ? ASN D 53 ? GLY C 48 ASN C 53 AA2 3 VAL D 76 ? SER D 81 ? VAL C 76 SER C 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 42 ? N VAL A 42 O PHE A 50 ? O PHE A 50 AA1 2 3 N ASN A 53 ? N ASN A 53 O VAL A 76 ? O VAL A 76 AA2 1 2 N VAL D 42 ? N VAL C 42 O PHE D 50 ? O PHE C 50 AA2 2 3 N ASN D 53 ? N ASN C 53 O VAL D 76 ? O VAL C 76 # _atom_sites.entry_id 4YEX _atom_sites.fract_transf_matrix[1][1] 0.009438 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004341 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020020 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017574 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 ARG 55 55 ? ? ? A . n A 1 56 ALA 56 56 ? ? ? A . n A 1 57 GLU 57 57 ? ? ? A . n A 1 58 ARG 58 58 ? ? ? A . n A 1 59 THR 59 59 ? ? ? A . n A 1 60 GLY 60 60 ? ? ? A . n A 1 61 ARG 61 61 ? ? ? A . n A 1 62 ASN 62 62 ? ? ? A . n A 1 63 PRO 63 63 ? ? ? A . n A 1 64 GLN 64 64 ? ? ? A . n A 1 65 THR 65 65 ? ? ? A . n A 1 66 GLY 66 66 ? ? ? A . n A 1 67 LYS 67 67 ? ? ? A . n A 1 68 GLU 68 68 ? ? ? A . n A 1 69 ILE 69 69 ? ? ? A . n A 1 70 LYS 70 70 ? ? ? A . n A 1 71 ILE 71 71 ? ? ? A . n A 1 72 ALA 72 72 ? ? ? A . n A 1 73 ALA 73 73 ? ? ? A . n A 1 74 ALA 74 74 ? ? ? A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 LYS 90 90 90 LYS LYS A . n B 2 1 DC 1 6 6 DC C B . n B 2 2 DC 2 7 7 DC C B . n B 2 3 DC 3 8 8 DC C B . n B 2 4 DC 4 9 9 DC C B . n B 2 5 DC 5 10 10 DC C B . n B 2 6 DC 6 11 11 DC C B . n B 2 7 DC 7 12 12 DC C B . n B 2 8 DC 8 13 13 DC C B . n B 2 9 DC 9 14 14 DC C B . n B 2 10 DC 10 15 15 DC C B . n B 2 11 DC 11 16 16 DC C B . n B 2 12 DC 12 17 17 DC C B . n B 2 13 DC 13 18 18 DC C B . n B 2 14 DC 14 19 19 DC C B . n B 2 15 DT 15 20 20 DT T B . n C 3 1 DC 1 101 101 DC C D . n C 3 2 DC 2 102 102 DC C D . n C 3 3 DC 3 103 103 DC C D . n C 3 4 DC 4 104 104 DC C D . n C 3 5 DC 5 105 105 DC C D . n C 3 6 DC 6 106 106 DC C D . n C 3 7 DC 7 107 107 DC C D . n C 3 8 DC 8 108 108 DC C D . n C 3 9 DC 9 109 109 DC C D . n C 3 10 DC 10 110 110 DC C D . n C 3 11 DC 11 111 111 DC C D . n C 3 12 DC 12 112 112 DC C D . n C 3 13 DC 13 113 113 DC C D . n C 3 14 DC 14 114 114 DC C D . n C 3 15 DC 15 115 115 DC C D . n D 1 1 MET 1 1 1 MET MET C . n D 1 2 ASN 2 2 2 ASN ASN C . n D 1 3 LYS 3 3 3 LYS LYS C . n D 1 4 THR 4 4 4 THR THR C . n D 1 5 GLN 5 5 5 GLN GLN C . n D 1 6 LEU 6 6 6 LEU LEU C . n D 1 7 ILE 7 7 7 ILE ILE C . n D 1 8 ASP 8 8 8 ASP ASP C . n D 1 9 VAL 9 9 9 VAL VAL C . n D 1 10 ILE 10 10 10 ILE ILE C . n D 1 11 ALA 11 11 11 ALA ALA C . n D 1 12 GLU 12 12 12 GLU GLU C . n D 1 13 LYS 13 13 13 LYS LYS C . n D 1 14 ALA 14 14 14 ALA ALA C . n D 1 15 GLU 15 15 15 GLU GLU C . n D 1 16 LEU 16 16 16 LEU LEU C . n D 1 17 SER 17 17 17 SER SER C . n D 1 18 LYS 18 18 18 LYS LYS C . n D 1 19 THR 19 19 19 THR THR C . n D 1 20 GLN 20 20 20 GLN GLN C . n D 1 21 ALA 21 21 21 ALA ALA C . n D 1 22 LYS 22 22 22 LYS LYS C . n D 1 23 ALA 23 23 23 ALA ALA C . n D 1 24 ALA 24 24 24 ALA ALA C . n D 1 25 LEU 25 25 25 LEU LEU C . n D 1 26 GLU 26 26 26 GLU GLU C . n D 1 27 SER 27 27 27 SER SER C . n D 1 28 THR 28 28 28 THR THR C . n D 1 29 LEU 29 29 29 LEU LEU C . n D 1 30 ALA 30 30 30 ALA ALA C . n D 1 31 ALA 31 31 31 ALA ALA C . n D 1 32 ILE 32 32 32 ILE ILE C . n D 1 33 THR 33 33 33 THR THR C . n D 1 34 GLU 34 34 34 GLU GLU C . n D 1 35 SER 35 35 35 SER SER C . n D 1 36 LEU 36 36 36 LEU LEU C . n D 1 37 LYS 37 37 37 LYS LYS C . n D 1 38 GLU 38 38 38 GLU GLU C . n D 1 39 GLY 39 39 39 GLY GLY C . n D 1 40 ASP 40 40 40 ASP ASP C . n D 1 41 ALA 41 41 41 ALA ALA C . n D 1 42 VAL 42 42 42 VAL VAL C . n D 1 43 GLN 43 43 43 GLN GLN C . n D 1 44 LEU 44 44 44 LEU LEU C . n D 1 45 VAL 45 45 45 VAL VAL C . n D 1 46 GLY 46 46 46 GLY GLY C . n D 1 47 PHE 47 47 47 PHE PHE C . n D 1 48 GLY 48 48 48 GLY GLY C . n D 1 49 THR 49 49 49 THR THR C . n D 1 50 PHE 50 50 50 PHE PHE C . n D 1 51 LYS 51 51 51 LYS LYS C . n D 1 52 VAL 52 52 52 VAL VAL C . n D 1 53 ASN 53 53 53 ASN ASN C . n D 1 54 HIS 54 54 54 HIS HIS C . n D 1 55 ARG 55 55 ? ? ? C . n D 1 56 ALA 56 56 ? ? ? C . n D 1 57 GLU 57 57 ? ? ? C . n D 1 58 ARG 58 58 ? ? ? C . n D 1 59 THR 59 59 ? ? ? C . n D 1 60 GLY 60 60 ? ? ? C . n D 1 61 ARG 61 61 ? ? ? C . n D 1 62 ASN 62 62 ? ? ? C . n D 1 63 PRO 63 63 ? ? ? C . n D 1 64 GLN 64 64 ? ? ? C . n D 1 65 THR 65 65 ? ? ? C . n D 1 66 GLY 66 66 ? ? ? C . n D 1 67 LYS 67 67 ? ? ? C . n D 1 68 GLU 68 68 ? ? ? C . n D 1 69 ILE 69 69 ? ? ? C . n D 1 70 LYS 70 70 ? ? ? C . n D 1 71 ILE 71 71 ? ? ? C . n D 1 72 ALA 72 72 ? ? ? C . n D 1 73 ALA 73 73 ? ? ? C . n D 1 74 ALA 74 74 74 ALA ALA C . n D 1 75 ASN 75 75 75 ASN ASN C . n D 1 76 VAL 76 76 76 VAL VAL C . n D 1 77 PRO 77 77 77 PRO PRO C . n D 1 78 ALA 78 78 78 ALA ALA C . n D 1 79 PHE 79 79 79 PHE PHE C . n D 1 80 VAL 80 80 80 VAL VAL C . n D 1 81 SER 81 81 81 SER SER C . n D 1 82 GLY 82 82 82 GLY GLY C . n D 1 83 LYS 83 83 83 LYS LYS C . n D 1 84 ALA 84 84 84 ALA ALA C . n D 1 85 LEU 85 85 85 LEU LEU C . n D 1 86 LYS 86 86 86 LYS LYS C . n D 1 87 ASP 87 87 87 ASP ASP C . n D 1 88 ALA 88 88 88 ALA ALA C . n D 1 89 VAL 89 89 89 VAL VAL C . n D 1 90 LYS 90 90 90 LYS LYS C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5520 ? 1 MORE -54 ? 1 'SSA (A^2)' 12360 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-06-29 2 'Structure model' 1 1 2019-02-20 3 'Structure model' 1 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' database_2 7 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 13 3 'Structure model' '_database_2.pdbx_DOI' 14 3 'Structure model' '_database_2.pdbx_database_accession' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER-TNT ? ? ? 'BUSTER 2.10.0' 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.11 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.0 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 6 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 4YEX _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;DNA sample sequence used in experiment is 5'-TTCAATTGTTGTTAACTTG-3'. But the asymmetric unit contains multiple, out-of-register duplex positions, so the DNA chain is modeled according to averaged density. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C1'" B DC 15 ? ? N1 B DC 15 ? ? 1.574 1.488 0.086 0.013 N 2 1 "O3'" B DT 20 ? ? "C3'" B DT 20 ? ? 1.381 1.419 -0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 111.90 108.30 3.60 0.30 N 2 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 111.75 108.30 3.45 0.30 N 3 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.71 108.30 2.41 0.30 N 4 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.24 108.30 1.94 0.30 N 5 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.22 108.30 1.92 0.30 N 6 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 111.28 108.30 2.98 0.30 N 7 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 110.77 108.30 2.47 0.30 N 8 1 "O4'" D DC 106 ? ? "C1'" D DC 106 ? ? N1 D DC 106 ? ? 110.20 108.30 1.90 0.30 N 9 1 "O4'" D DC 108 ? ? "C1'" D DC 108 ? ? N1 D DC 108 ? ? 110.46 108.30 2.16 0.30 N 10 1 "O4'" D DC 113 ? ? "C1'" D DC 113 ? ? N1 D DC 113 ? ? 110.30 108.30 2.00 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 47 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -70.87 _pdbx_validate_torsion.psi -75.79 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 90 ? CD ? A LYS 90 CD 2 1 Y 1 A LYS 90 ? CE ? A LYS 90 CE 3 1 Y 1 A LYS 90 ? NZ ? A LYS 90 NZ 4 1 Y 1 C THR 19 ? OG1 ? D THR 19 OG1 5 1 Y 1 C THR 19 ? CG2 ? D THR 19 CG2 6 1 Y 1 C LYS 90 ? CD ? D LYS 90 CD 7 1 Y 1 C LYS 90 ? CE ? D LYS 90 CE 8 1 Y 1 C LYS 90 ? NZ ? D LYS 90 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 55 ? A ARG 55 2 1 Y 1 A ALA 56 ? A ALA 56 3 1 Y 1 A GLU 57 ? A GLU 57 4 1 Y 1 A ARG 58 ? A ARG 58 5 1 Y 1 A THR 59 ? A THR 59 6 1 Y 1 A GLY 60 ? A GLY 60 7 1 Y 1 A ARG 61 ? A ARG 61 8 1 Y 1 A ASN 62 ? A ASN 62 9 1 Y 1 A PRO 63 ? A PRO 63 10 1 Y 1 A GLN 64 ? A GLN 64 11 1 Y 1 A THR 65 ? A THR 65 12 1 Y 1 A GLY 66 ? A GLY 66 13 1 Y 1 A LYS 67 ? A LYS 67 14 1 Y 1 A GLU 68 ? A GLU 68 15 1 Y 1 A ILE 69 ? A ILE 69 16 1 Y 1 A LYS 70 ? A LYS 70 17 1 Y 1 A ILE 71 ? A ILE 71 18 1 Y 1 A ALA 72 ? A ALA 72 19 1 Y 1 A ALA 73 ? A ALA 73 20 1 Y 1 A ALA 74 ? A ALA 74 21 1 Y 1 C ARG 55 ? D ARG 55 22 1 Y 1 C ALA 56 ? D ALA 56 23 1 Y 1 C GLU 57 ? D GLU 57 24 1 Y 1 C ARG 58 ? D ARG 58 25 1 Y 1 C THR 59 ? D THR 59 26 1 Y 1 C GLY 60 ? D GLY 60 27 1 Y 1 C ARG 61 ? D ARG 61 28 1 Y 1 C ASN 62 ? D ASN 62 29 1 Y 1 C PRO 63 ? D PRO 63 30 1 Y 1 C GLN 64 ? D GLN 64 31 1 Y 1 C THR 65 ? D THR 65 32 1 Y 1 C GLY 66 ? D GLY 66 33 1 Y 1 C LYS 67 ? D LYS 67 34 1 Y 1 C GLU 68 ? D GLU 68 35 1 Y 1 C ILE 69 ? D ILE 69 36 1 Y 1 C LYS 70 ? D LYS 70 37 1 Y 1 C ILE 71 ? D ILE 71 38 1 Y 1 C ALA 72 ? D ALA 72 39 1 Y 1 C ALA 73 ? D ALA 73 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 GLN N N N N 144 GLN CA C N S 145 GLN C C N N 146 GLN O O N N 147 GLN CB C N N 148 GLN CG C N N 149 GLN CD C N N 150 GLN OE1 O N N 151 GLN NE2 N N N 152 GLN OXT O N N 153 GLN H H N N 154 GLN H2 H N N 155 GLN HA H N N 156 GLN HB2 H N N 157 GLN HB3 H N N 158 GLN HG2 H N N 159 GLN HG3 H N N 160 GLN HE21 H N N 161 GLN HE22 H N N 162 GLN HXT H N N 163 GLU N N N N 164 GLU CA C N S 165 GLU C C N N 166 GLU O O N N 167 GLU CB C N N 168 GLU CG C N N 169 GLU CD C N N 170 GLU OE1 O N N 171 GLU OE2 O N N 172 GLU OXT O N N 173 GLU H H N N 174 GLU H2 H N N 175 GLU HA H N N 176 GLU HB2 H N N 177 GLU HB3 H N N 178 GLU HG2 H N N 179 GLU HG3 H N N 180 GLU HE2 H N N 181 GLU HXT H N N 182 GLY N N N N 183 GLY CA C N N 184 GLY C C N N 185 GLY O O N N 186 GLY OXT O N N 187 GLY H H N N 188 GLY H2 H N N 189 GLY HA2 H N N 190 GLY HA3 H N N 191 GLY HXT H N N 192 HIS N N N N 193 HIS CA C N S 194 HIS C C N N 195 HIS O O N N 196 HIS CB C N N 197 HIS CG C Y N 198 HIS ND1 N Y N 199 HIS CD2 C Y N 200 HIS CE1 C Y N 201 HIS NE2 N Y N 202 HIS OXT O N N 203 HIS H H N N 204 HIS H2 H N N 205 HIS HA H N N 206 HIS HB2 H N N 207 HIS HB3 H N N 208 HIS HD1 H N N 209 HIS HD2 H N N 210 HIS HE1 H N N 211 HIS HE2 H N N 212 HIS HXT H N N 213 ILE N N N N 214 ILE CA C N S 215 ILE C C N N 216 ILE O O N N 217 ILE CB C N S 218 ILE CG1 C N N 219 ILE CG2 C N N 220 ILE CD1 C N N 221 ILE OXT O N N 222 ILE H H N N 223 ILE H2 H N N 224 ILE HA H N N 225 ILE HB H N N 226 ILE HG12 H N N 227 ILE HG13 H N N 228 ILE HG21 H N N 229 ILE HG22 H N N 230 ILE HG23 H N N 231 ILE HD11 H N N 232 ILE HD12 H N N 233 ILE HD13 H N N 234 ILE HXT H N N 235 LEU N N N N 236 LEU CA C N S 237 LEU C C N N 238 LEU O O N N 239 LEU CB C N N 240 LEU CG C N N 241 LEU CD1 C N N 242 LEU CD2 C N N 243 LEU OXT O N N 244 LEU H H N N 245 LEU H2 H N N 246 LEU HA H N N 247 LEU HB2 H N N 248 LEU HB3 H N N 249 LEU HG H N N 250 LEU HD11 H N N 251 LEU HD12 H N N 252 LEU HD13 H N N 253 LEU HD21 H N N 254 LEU HD22 H N N 255 LEU HD23 H N N 256 LEU HXT H N N 257 LYS N N N N 258 LYS CA C N S 259 LYS C C N N 260 LYS O O N N 261 LYS CB C N N 262 LYS CG C N N 263 LYS CD C N N 264 LYS CE C N N 265 LYS NZ N N N 266 LYS OXT O N N 267 LYS H H N N 268 LYS H2 H N N 269 LYS HA H N N 270 LYS HB2 H N N 271 LYS HB3 H N N 272 LYS HG2 H N N 273 LYS HG3 H N N 274 LYS HD2 H N N 275 LYS HD3 H N N 276 LYS HE2 H N N 277 LYS HE3 H N N 278 LYS HZ1 H N N 279 LYS HZ2 H N N 280 LYS HZ3 H N N 281 LYS HXT H N N 282 MET N N N N 283 MET CA C N S 284 MET C C N N 285 MET O O N N 286 MET CB C N N 287 MET CG C N N 288 MET SD S N N 289 MET CE C N N 290 MET OXT O N N 291 MET H H N N 292 MET H2 H N N 293 MET HA H N N 294 MET HB2 H N N 295 MET HB3 H N N 296 MET HG2 H N N 297 MET HG3 H N N 298 MET HE1 H N N 299 MET HE2 H N N 300 MET HE3 H N N 301 MET HXT H N N 302 PHE N N N N 303 PHE CA C N S 304 PHE C C N N 305 PHE O O N N 306 PHE CB C N N 307 PHE CG C Y N 308 PHE CD1 C Y N 309 PHE CD2 C Y N 310 PHE CE1 C Y N 311 PHE CE2 C Y N 312 PHE CZ C Y N 313 PHE OXT O N N 314 PHE H H N N 315 PHE H2 H N N 316 PHE HA H N N 317 PHE HB2 H N N 318 PHE HB3 H N N 319 PHE HD1 H N N 320 PHE HD2 H N N 321 PHE HE1 H N N 322 PHE HE2 H N N 323 PHE HZ H N N 324 PHE HXT H N N 325 PRO N N N N 326 PRO CA C N S 327 PRO C C N N 328 PRO O O N N 329 PRO CB C N N 330 PRO CG C N N 331 PRO CD C N N 332 PRO OXT O N N 333 PRO H H N N 334 PRO HA H N N 335 PRO HB2 H N N 336 PRO HB3 H N N 337 PRO HG2 H N N 338 PRO HG3 H N N 339 PRO HD2 H N N 340 PRO HD3 H N N 341 PRO HXT H N N 342 SER N N N N 343 SER CA C N S 344 SER C C N N 345 SER O O N N 346 SER CB C N N 347 SER OG O N N 348 SER OXT O N N 349 SER H H N N 350 SER H2 H N N 351 SER HA H N N 352 SER HB2 H N N 353 SER HB3 H N N 354 SER HG H N N 355 SER HXT H N N 356 THR N N N N 357 THR CA C N S 358 THR C C N N 359 THR O O N N 360 THR CB C N R 361 THR OG1 O N N 362 THR CG2 C N N 363 THR OXT O N N 364 THR H H N N 365 THR H2 H N N 366 THR HA H N N 367 THR HB H N N 368 THR HG1 H N N 369 THR HG21 H N N 370 THR HG22 H N N 371 THR HG23 H N N 372 THR HXT H N N 373 VAL N N N N 374 VAL CA C N S 375 VAL C C N N 376 VAL O O N N 377 VAL CB C N N 378 VAL CG1 C N N 379 VAL CG2 C N N 380 VAL OXT O N N 381 VAL H H N N 382 VAL H2 H N N 383 VAL HA H N N 384 VAL HB H N N 385 VAL HG11 H N N 386 VAL HG12 H N N 387 VAL HG13 H N N 388 VAL HG21 H N N 389 VAL HG22 H N N 390 VAL HG23 H N N 391 VAL HXT H N N 392 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DC OP3 P sing N N 70 DC OP3 HOP3 sing N N 71 DC P OP1 doub N N 72 DC P OP2 sing N N 73 DC P "O5'" sing N N 74 DC OP2 HOP2 sing N N 75 DC "O5'" "C5'" sing N N 76 DC "C5'" "C4'" sing N N 77 DC "C5'" "H5'" sing N N 78 DC "C5'" "H5''" sing N N 79 DC "C4'" "O4'" sing N N 80 DC "C4'" "C3'" sing N N 81 DC "C4'" "H4'" sing N N 82 DC "O4'" "C1'" sing N N 83 DC "C3'" "O3'" sing N N 84 DC "C3'" "C2'" sing N N 85 DC "C3'" "H3'" sing N N 86 DC "O3'" "HO3'" sing N N 87 DC "C2'" "C1'" sing N N 88 DC "C2'" "H2'" sing N N 89 DC "C2'" "H2''" sing N N 90 DC "C1'" N1 sing N N 91 DC "C1'" "H1'" sing N N 92 DC N1 C2 sing N N 93 DC N1 C6 sing N N 94 DC C2 O2 doub N N 95 DC C2 N3 sing N N 96 DC N3 C4 doub N N 97 DC C4 N4 sing N N 98 DC C4 C5 sing N N 99 DC N4 H41 sing N N 100 DC N4 H42 sing N N 101 DC C5 C6 doub N N 102 DC C5 H5 sing N N 103 DC C6 H6 sing N N 104 DT OP3 P sing N N 105 DT OP3 HOP3 sing N N 106 DT P OP1 doub N N 107 DT P OP2 sing N N 108 DT P "O5'" sing N N 109 DT OP2 HOP2 sing N N 110 DT "O5'" "C5'" sing N N 111 DT "C5'" "C4'" sing N N 112 DT "C5'" "H5'" sing N N 113 DT "C5'" "H5''" sing N N 114 DT "C4'" "O4'" sing N N 115 DT "C4'" "C3'" sing N N 116 DT "C4'" "H4'" sing N N 117 DT "O4'" "C1'" sing N N 118 DT "C3'" "O3'" sing N N 119 DT "C3'" "C2'" sing N N 120 DT "C3'" "H3'" sing N N 121 DT "O3'" "HO3'" sing N N 122 DT "C2'" "C1'" sing N N 123 DT "C2'" "H2'" sing N N 124 DT "C2'" "H2''" sing N N 125 DT "C1'" N1 sing N N 126 DT "C1'" "H1'" sing N N 127 DT N1 C2 sing N N 128 DT N1 C6 sing N N 129 DT C2 O2 doub N N 130 DT C2 N3 sing N N 131 DT N3 C4 sing N N 132 DT N3 H3 sing N N 133 DT C4 O4 doub N N 134 DT C4 C5 sing N N 135 DT C5 C7 sing N N 136 DT C5 C6 doub N N 137 DT C7 H71 sing N N 138 DT C7 H72 sing N N 139 DT C7 H73 sing N N 140 DT C6 H6 sing N N 141 GLN N CA sing N N 142 GLN N H sing N N 143 GLN N H2 sing N N 144 GLN CA C sing N N 145 GLN CA CB sing N N 146 GLN CA HA sing N N 147 GLN C O doub N N 148 GLN C OXT sing N N 149 GLN CB CG sing N N 150 GLN CB HB2 sing N N 151 GLN CB HB3 sing N N 152 GLN CG CD sing N N 153 GLN CG HG2 sing N N 154 GLN CG HG3 sing N N 155 GLN CD OE1 doub N N 156 GLN CD NE2 sing N N 157 GLN NE2 HE21 sing N N 158 GLN NE2 HE22 sing N N 159 GLN OXT HXT sing N N 160 GLU N CA sing N N 161 GLU N H sing N N 162 GLU N H2 sing N N 163 GLU CA C sing N N 164 GLU CA CB sing N N 165 GLU CA HA sing N N 166 GLU C O doub N N 167 GLU C OXT sing N N 168 GLU CB CG sing N N 169 GLU CB HB2 sing N N 170 GLU CB HB3 sing N N 171 GLU CG CD sing N N 172 GLU CG HG2 sing N N 173 GLU CG HG3 sing N N 174 GLU CD OE1 doub N N 175 GLU CD OE2 sing N N 176 GLU OE2 HE2 sing N N 177 GLU OXT HXT sing N N 178 GLY N CA sing N N 179 GLY N H sing N N 180 GLY N H2 sing N N 181 GLY CA C sing N N 182 GLY CA HA2 sing N N 183 GLY CA HA3 sing N N 184 GLY C O doub N N 185 GLY C OXT sing N N 186 GLY OXT HXT sing N N 187 HIS N CA sing N N 188 HIS N H sing N N 189 HIS N H2 sing N N 190 HIS CA C sing N N 191 HIS CA CB sing N N 192 HIS CA HA sing N N 193 HIS C O doub N N 194 HIS C OXT sing N N 195 HIS CB CG sing N N 196 HIS CB HB2 sing N N 197 HIS CB HB3 sing N N 198 HIS CG ND1 sing Y N 199 HIS CG CD2 doub Y N 200 HIS ND1 CE1 doub Y N 201 HIS ND1 HD1 sing N N 202 HIS CD2 NE2 sing Y N 203 HIS CD2 HD2 sing N N 204 HIS CE1 NE2 sing Y N 205 HIS CE1 HE1 sing N N 206 HIS NE2 HE2 sing N N 207 HIS OXT HXT sing N N 208 ILE N CA sing N N 209 ILE N H sing N N 210 ILE N H2 sing N N 211 ILE CA C sing N N 212 ILE CA CB sing N N 213 ILE CA HA sing N N 214 ILE C O doub N N 215 ILE C OXT sing N N 216 ILE CB CG1 sing N N 217 ILE CB CG2 sing N N 218 ILE CB HB sing N N 219 ILE CG1 CD1 sing N N 220 ILE CG1 HG12 sing N N 221 ILE CG1 HG13 sing N N 222 ILE CG2 HG21 sing N N 223 ILE CG2 HG22 sing N N 224 ILE CG2 HG23 sing N N 225 ILE CD1 HD11 sing N N 226 ILE CD1 HD12 sing N N 227 ILE CD1 HD13 sing N N 228 ILE OXT HXT sing N N 229 LEU N CA sing N N 230 LEU N H sing N N 231 LEU N H2 sing N N 232 LEU CA C sing N N 233 LEU CA CB sing N N 234 LEU CA HA sing N N 235 LEU C O doub N N 236 LEU C OXT sing N N 237 LEU CB CG sing N N 238 LEU CB HB2 sing N N 239 LEU CB HB3 sing N N 240 LEU CG CD1 sing N N 241 LEU CG CD2 sing N N 242 LEU CG HG sing N N 243 LEU CD1 HD11 sing N N 244 LEU CD1 HD12 sing N N 245 LEU CD1 HD13 sing N N 246 LEU CD2 HD21 sing N N 247 LEU CD2 HD22 sing N N 248 LEU CD2 HD23 sing N N 249 LEU OXT HXT sing N N 250 LYS N CA sing N N 251 LYS N H sing N N 252 LYS N H2 sing N N 253 LYS CA C sing N N 254 LYS CA CB sing N N 255 LYS CA HA sing N N 256 LYS C O doub N N 257 LYS C OXT sing N N 258 LYS CB CG sing N N 259 LYS CB HB2 sing N N 260 LYS CB HB3 sing N N 261 LYS CG CD sing N N 262 LYS CG HG2 sing N N 263 LYS CG HG3 sing N N 264 LYS CD CE sing N N 265 LYS CD HD2 sing N N 266 LYS CD HD3 sing N N 267 LYS CE NZ sing N N 268 LYS CE HE2 sing N N 269 LYS CE HE3 sing N N 270 LYS NZ HZ1 sing N N 271 LYS NZ HZ2 sing N N 272 LYS NZ HZ3 sing N N 273 LYS OXT HXT sing N N 274 MET N CA sing N N 275 MET N H sing N N 276 MET N H2 sing N N 277 MET CA C sing N N 278 MET CA CB sing N N 279 MET CA HA sing N N 280 MET C O doub N N 281 MET C OXT sing N N 282 MET CB CG sing N N 283 MET CB HB2 sing N N 284 MET CB HB3 sing N N 285 MET CG SD sing N N 286 MET CG HG2 sing N N 287 MET CG HG3 sing N N 288 MET SD CE sing N N 289 MET CE HE1 sing N N 290 MET CE HE2 sing N N 291 MET CE HE3 sing N N 292 MET OXT HXT sing N N 293 PHE N CA sing N N 294 PHE N H sing N N 295 PHE N H2 sing N N 296 PHE CA C sing N N 297 PHE CA CB sing N N 298 PHE CA HA sing N N 299 PHE C O doub N N 300 PHE C OXT sing N N 301 PHE CB CG sing N N 302 PHE CB HB2 sing N N 303 PHE CB HB3 sing N N 304 PHE CG CD1 doub Y N 305 PHE CG CD2 sing Y N 306 PHE CD1 CE1 sing Y N 307 PHE CD1 HD1 sing N N 308 PHE CD2 CE2 doub Y N 309 PHE CD2 HD2 sing N N 310 PHE CE1 CZ doub Y N 311 PHE CE1 HE1 sing N N 312 PHE CE2 CZ sing Y N 313 PHE CE2 HE2 sing N N 314 PHE CZ HZ sing N N 315 PHE OXT HXT sing N N 316 PRO N CA sing N N 317 PRO N CD sing N N 318 PRO N H sing N N 319 PRO CA C sing N N 320 PRO CA CB sing N N 321 PRO CA HA sing N N 322 PRO C O doub N N 323 PRO C OXT sing N N 324 PRO CB CG sing N N 325 PRO CB HB2 sing N N 326 PRO CB HB3 sing N N 327 PRO CG CD sing N N 328 PRO CG HG2 sing N N 329 PRO CG HG3 sing N N 330 PRO CD HD2 sing N N 331 PRO CD HD3 sing N N 332 PRO OXT HXT sing N N 333 SER N CA sing N N 334 SER N H sing N N 335 SER N H2 sing N N 336 SER CA C sing N N 337 SER CA CB sing N N 338 SER CA HA sing N N 339 SER C O doub N N 340 SER C OXT sing N N 341 SER CB OG sing N N 342 SER CB HB2 sing N N 343 SER CB HB3 sing N N 344 SER OG HG sing N N 345 SER OXT HXT sing N N 346 THR N CA sing N N 347 THR N H sing N N 348 THR N H2 sing N N 349 THR CA C sing N N 350 THR CA CB sing N N 351 THR CA HA sing N N 352 THR C O doub N N 353 THR C OXT sing N N 354 THR CB OG1 sing N N 355 THR CB CG2 sing N N 356 THR CB HB sing N N 357 THR OG1 HG1 sing N N 358 THR CG2 HG21 sing N N 359 THR CG2 HG22 sing N N 360 THR CG2 HG23 sing N N 361 THR OXT HXT sing N N 362 VAL N CA sing N N 363 VAL N H sing N N 364 VAL N H2 sing N N 365 VAL CA C sing N N 366 VAL CA CB sing N N 367 VAL CA HA sing N N 368 VAL C O doub N N 369 VAL C OXT sing N N 370 VAL CB CG1 sing N N 371 VAL CB CG2 sing N N 372 VAL CB HB sing N N 373 VAL CG1 HG11 sing N N 374 VAL CG1 HG12 sing N N 375 VAL CG1 HG13 sing N N 376 VAL CG2 HG21 sing N N 377 VAL CG2 HG22 sing N N 378 VAL CG2 HG23 sing N N 379 VAL OXT HXT sing N N 380 # _ndb_struct_conf_na.entry_id 4YEX _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 4 1_555 C DC 11 1_555 0.787 -1.425 -0.702 3.818 -19.940 12.257 1 B_DC9:DC111_D B 9 ? D 111 ? ? ? 1 B DC 5 1_555 C DC 10 1_555 -0.927 -1.377 -0.966 12.662 -22.758 3.035 2 B_DC10:DC110_D B 10 ? D 110 ? ? ? 1 B DC 8 1_555 C DC 7 1_555 -1.899 -1.544 -0.111 9.080 -18.632 0.412 3 B_DC13:DC107_D B 13 ? D 107 ? ? ? # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 B _ndb_struct_na_base_pair_step.i_label_comp_id_1 DC _ndb_struct_na_base_pair_step.i_label_seq_id_1 4 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 C _ndb_struct_na_base_pair_step.j_label_comp_id_1 DC _ndb_struct_na_base_pair_step.j_label_seq_id_1 11 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 B _ndb_struct_na_base_pair_step.i_label_comp_id_2 DC _ndb_struct_na_base_pair_step.i_label_seq_id_2 5 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 C _ndb_struct_na_base_pair_step.j_label_comp_id_2 DC _ndb_struct_na_base_pair_step.j_label_seq_id_2 10 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift -0.252 _ndb_struct_na_base_pair_step.slide 0.429 _ndb_struct_na_base_pair_step.rise 2.912 _ndb_struct_na_base_pair_step.tilt 0.796 _ndb_struct_na_base_pair_step.roll 8.200 _ndb_struct_na_base_pair_step.twist 19.828 _ndb_struct_na_base_pair_step.x_displacement -1.887 _ndb_struct_na_base_pair_step.y_displacement 0.972 _ndb_struct_na_base_pair_step.helical_rise 2.847 _ndb_struct_na_base_pair_step.inclination 22.592 _ndb_struct_na_base_pair_step.tip -2.194 _ndb_struct_na_base_pair_step.helical_twist 21.456 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name BB_DC9DC10:DC110DC111_DD _ndb_struct_na_base_pair_step.i_auth_asym_id_1 B _ndb_struct_na_base_pair_step.i_auth_seq_id_1 9 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 D _ndb_struct_na_base_pair_step.j_auth_seq_id_1 111 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 B _ndb_struct_na_base_pair_step.i_auth_seq_id_2 10 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 D _ndb_struct_na_base_pair_step.j_auth_seq_id_2 110 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MUL _pdbx_initial_refinement_model.details ? #