data_4YF0
#
_entry.id 4YF0
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4YF0 pdb_00004yf0 10.2210/pdb4yf0/pdb
WWPDB D_1000207347 ? ?
#
loop_
_pdbx_database_related.content_type
_pdbx_database_related.db_id
_pdbx_database_related.db_name
_pdbx_database_related.details
unspecified 4YEW PDB .
unspecified 4YEX PDB .
unspecified 4YEY PDB .
unspecified 4YFH PDB .
unspecified 4YFT PDB .
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 4YF0
_pdbx_database_status.recvd_initial_deposition_date 2015-02-24
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Hammel, M.' 1
'Reyes, F.E.' 2
'Parpana, R.' 3
'Tainer, J.A.' 4
'Adhya, S.' 5
'Amlanjyoti, D.' 6
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Sci Adv'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2375-2548
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 2
_citation.language ?
_citation.page_first e1600650
_citation.page_last e1600650
_citation.title 'HU multimerization shift controls nucleoid compaction.'
_citation.year 2016
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1126/sciadv.1600650
_citation.pdbx_database_id_PubMed 27482541
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Hammel, M.' 1 ?
primary 'Amlanjyoti, D.' 2 ?
primary 'Reyes, F.E.' 3 ?
primary 'Chen, J.H.' 4 ?
primary 'Parpana, R.' 5 ?
primary 'Tang, H.Y.' 6 ?
primary 'Larabell, C.A.' 7 ?
primary 'Tainer, J.A.' 8 ?
primary 'Adhya, S.' 9 0000-0002-8663-6178
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 4YF0
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 74.890
_cell.length_a_esd ?
_cell.length_b 74.890
_cell.length_b_esd ?
_cell.length_c 220.210
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 24
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 4YF0
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 178
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 61 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'DNA-binding protein HU-alpha' 9702.219 2 ? ? ? ?
2 polymer syn 'synthetic DNA strand' 3196.086 1 ? ? ? ?
3 polymer syn 'synthetic DNA strand' 3623.384 1 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name HU-2,NS2
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;HMNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKKGDALQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAF
VSGKALKDAVK
;
;HMNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKKGDALQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAF
VSGKALKDAVK
;
A,B ?
2 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DT)(DT)(DT)(DT)(DC)(DC)(DC)(DC)'
CCCTTTTCCCC C ?
3 polydeoxyribonucleotide no no '(DT)(DT)(DT)(DT)(DT)(DT)(DA)(DA)(DT)(DT)(DT)(DT)'
TTTTTTAATTTT D ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 HIS n
1 2 MET n
1 3 ASN n
1 4 LYS n
1 5 THR n
1 6 GLN n
1 7 LEU n
1 8 ILE n
1 9 ASP n
1 10 VAL n
1 11 ILE n
1 12 ALA n
1 13 GLU n
1 14 LYS n
1 15 ALA n
1 16 GLU n
1 17 LEU n
1 18 SER n
1 19 LYS n
1 20 THR n
1 21 GLN n
1 22 ALA n
1 23 LYS n
1 24 ALA n
1 25 ALA n
1 26 LEU n
1 27 GLU n
1 28 SER n
1 29 THR n
1 30 LEU n
1 31 ALA n
1 32 ALA n
1 33 ILE n
1 34 THR n
1 35 GLU n
1 36 SER n
1 37 LEU n
1 38 LYS n
1 39 LYS n
1 40 GLY n
1 41 ASP n
1 42 ALA n
1 43 LEU n
1 44 GLN n
1 45 LEU n
1 46 VAL n
1 47 GLY n
1 48 PHE n
1 49 GLY n
1 50 THR n
1 51 PHE n
1 52 LYS n
1 53 VAL n
1 54 ASN n
1 55 HIS n
1 56 ARG n
1 57 ALA n
1 58 GLU n
1 59 ARG n
1 60 THR n
1 61 GLY n
1 62 ARG n
1 63 ASN n
1 64 PRO n
1 65 GLN n
1 66 THR n
1 67 GLY n
1 68 LYS n
1 69 GLU n
1 70 ILE n
1 71 LYS n
1 72 ILE n
1 73 ALA n
1 74 ALA n
1 75 ALA n
1 76 ASN n
1 77 VAL n
1 78 PRO n
1 79 ALA n
1 80 PHE n
1 81 VAL n
1 82 SER n
1 83 GLY n
1 84 LYS n
1 85 ALA n
1 86 LEU n
1 87 LYS n
1 88 ASP n
1 89 ALA n
1 90 VAL n
1 91 LYS n
2 1 DC n
2 2 DC n
2 3 DC n
2 4 DT n
2 5 DT n
2 6 DT n
2 7 DT n
2 8 DC n
2 9 DC n
2 10 DC n
2 11 DC n
3 1 DT n
3 2 DT n
3 3 DT n
3 4 DT n
3 5 DT n
3 6 DT n
3 7 DA n
3 8 DA n
3 9 DT n
3 10 DT n
3 11 DT n
3 12 DT n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type 'Biological sequence'
_entity_src_gen.pdbx_beg_seq_num 1
_entity_src_gen.pdbx_end_seq_num 91
_entity_src_gen.gene_src_common_name ?
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'hupA, b4000, JW3964'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
2 1 sample 1 11 'Escherichia coli' ? 562 ?
3 1 sample 1 12 'Escherichia coli' ? 562 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 UNP DBHA_ECO57 P0ACF2 ? 1
;MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFV
SGKALKDAVK
;
1
2 PDB 4YF0 4YF0 ? 2 ? 1
3 PDB 4YF0 4YF0 ? 3 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 4YF0 A 2 ? 91 ? P0ACF2 1 ? 90 ? 1 90
2 1 4YF0 B 2 ? 91 ? P0ACF2 1 ? 90 ? 1 90
3 2 4YF0 C 1 ? 11 ? 4YF0 1 ? 11 ? 1 11
4 3 4YF0 D 1 ? 12 ? 4YF0 1 ? 12 ? 1 12
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 4YF0 HIS A 1 ? UNP P0ACF2 ? ? 'expression tag' 0 1
1 4YF0 LYS A 39 ? UNP P0ACF2 GLU 38 'engineered mutation' 38 2
1 4YF0 LEU A 43 ? UNP P0ACF2 VAL 42 'engineered mutation' 42 3
2 4YF0 HIS B 1 ? UNP P0ACF2 ? ? 'expression tag' 0 4
2 4YF0 LYS B 39 ? UNP P0ACF2 GLU 38 'engineered mutation' 38 5
2 4YF0 LEU B 43 ? UNP P0ACF2 VAL 42 'engineered mutation' 42 6
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 4YF0
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 3.66
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 66.10
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 6.5
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '0.1M Bis-Tris pH 5.8, 30% PEG MME 550, 0.05 M CaCl2'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 93.15
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details Q315R
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'ADSC QUANTUM 315r'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2013-01-25
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'ALS BEAMLINE 12.3.1'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.0
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 12.3.1
_diffrn_source.pdbx_synchrotron_site ALS
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 4YF0
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.790
_reflns.d_resolution_low 110.103
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all 9847
_reflns.number_obs 9847
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 100.000
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 39.200
_reflns.pdbx_Rmerge_I_obs 0.106
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 35.1
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 386391
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
_reflns_shell.d_res_high 2.79
_reflns_shell.d_res_low 2.80
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 2.199
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.percent_possible_all 100.000
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs 1.913
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy 31.76
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half ?
_reflns_shell.pdbx_R_split ?
#
_refine.aniso_B[1][1] 5.0766
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][2] 5.0766
_refine.aniso_B[2][3] 0.0000
_refine.aniso_B[3][3] -10.1533
_refine.B_iso_max 222.920
_refine.B_iso_mean 101.8625
_refine.B_iso_min 49.280
_refine.correlation_coeff_Fo_to_Fc 0.9117
_refine.correlation_coeff_Fo_to_Fc_free 0.9008
_refine.details
;The asymmetric unit of the crystal contains multiple, out-of-register duplex positions, such that backbones superimpose, but base identity differs. The density is an average of all nucleotides, and the DNA chain was built accordingly.
;
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 4YF0
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.7900
_refine.ls_d_res_low 64.8600
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 9783
_refine.ls_number_reflns_R_free 469
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.9500
_refine.ls_percent_reflns_R_free 4.7900
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2481
_refine.ls_R_factor_R_free 0.2649
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2472
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max 1.000
_refine.occupancy_min 1.000
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 1MUL
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.3030
_refine.pdbx_overall_SU_R_free_Blow_DPI 0.3120
_refine.pdbx_overall_SU_R_Blow_DPI 0.5750
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.overall_SU_R_Cruickshank_DPI 0.5020
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_analyze.entry_id 4YF0
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_coordinate_error_obs 0.664
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_sigma_a_free_details ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_sigma_a_obs_details ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.RG_d_res_high ?
_refine_analyze.RG_d_res_low ?
_refine_analyze.RG_free ?
_refine_analyze.RG_work ?
_refine_analyze.RG_free_work_ratio ?
_refine_analyze.pdbx_Luzzati_d_res_high_obs ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1215
_refine_hist.pdbx_number_atoms_nucleic_acid 455
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 1670
_refine_hist.d_res_high 2.7900
_refine_hist.d_res_low 64.8600
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? ? ? 555 ? t_dihedral_angle_d 2.000 SINUSOIDAL
'X-RAY DIFFRACTION' ? ? ? 31 ? t_trig_c_planes 2.000 HARMONIC
'X-RAY DIFFRACTION' ? ? ? 197 ? t_gen_planes 5.000 HARMONIC
'X-RAY DIFFRACTION' ? ? ? 1724 ? t_it 20.000 HARMONIC
'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ?
'X-RAY DIFFRACTION' ? ? ? 243 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC
'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ?
'X-RAY DIFFRACTION' ? ? ? 1761 ? t_ideal_dist_contact 4.000 SEMIHARMONIC
'X-RAY DIFFRACTION' ? 0.010 ? 1724 ? t_bond_d 2.000 HARMONIC
'X-RAY DIFFRACTION' ? 1.200 ? 2406 ? t_angle_deg 2.000 HARMONIC
'X-RAY DIFFRACTION' ? 2.690 ? ? ? t_omega_torsion ? ?
'X-RAY DIFFRACTION' ? 21.670 ? ? ? t_other_torsion ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 2.7900
_refine_ls_shell.d_res_low 3.1200
_refine_ls_shell.number_reflns_all 2688
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 138
_refine_ls_shell.number_reflns_R_work 2550
_refine_ls_shell.percent_reflns_obs 99.9500
_refine_ls_shell.percent_reflns_R_free 5.1300
_refine_ls_shell.R_factor_all 0.2705
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.2758
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.R_factor_R_work 0.2702
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 4YF0
_struct.title HU38-19bp
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag ?
#
_struct_keywords.entry_id 4YF0
_struct_keywords.text 'HU-DNA, transcription, pathogenicity, DNA BINDING PROTEIN-DNA complex'
_struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 AA1 ASN A 3 ? ALA A 15 ? ASN A 2 ALA A 14 1 ? 13
HELX_P HELX_P2 AA2 SER A 18 ? LYS A 39 ? SER A 17 LYS A 38 1 ? 22
HELX_P HELX_P3 AA3 GLY A 83 ? ALA A 89 ? GLY A 82 ALA A 88 1 ? 7
HELX_P HELX_P4 AA4 ASN B 3 ? ALA B 15 ? ASN B 2 ALA B 14 1 ? 13
HELX_P HELX_P5 AA5 SER B 18 ? LYS B 39 ? SER B 17 LYS B 38 1 ? 22
HELX_P HELX_P6 AA6 GLY B 83 ? ALA B 89 ? GLY B 82 ALA B 88 1 ? 7
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? D DT 5 N3 ? ? ? 1_555 D DA 8 N1 ? ? D DT 5 D DA 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? D DT 5 O4 ? ? ? 1_555 D DA 8 N6 ? ? D DT 5 D DA 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? D DT 6 N3 ? ? ? 1_555 D DA 7 N1 ? ? D DT 6 D DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? D DT 6 O4 ? ? ? 1_555 D DA 7 N6 ? ? D DT 6 D DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? D DA 7 N1 ? ? ? 1_555 D DT 6 N3 ? ? D DA 7 D DT 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? D DA 7 N6 ? ? ? 1_555 D DT 6 O4 ? ? D DA 7 D DT 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? D DA 8 N1 ? ? ? 1_555 D DT 5 N3 ? ? D DA 8 D DT 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? D DA 8 N6 ? ? ? 1_555 D DT 5 O4 ? ? D DA 8 D DT 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 ALA 74 A . ? ALA 73 A ALA 75 A ? ALA 74 A 1 -15.72
2 PRO 64 B . ? PRO 63 B GLN 65 B ? GLN 64 B 1 -2.47
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA1 ? 3 ?
AA2 ? 3 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? anti-parallel
AA1 2 3 ? anti-parallel
AA2 1 2 ? anti-parallel
AA2 2 3 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 LEU A 43 ? LEU A 45 ? LEU A 42 LEU A 44
AA1 2 GLY A 49 ? ASN A 54 ? GLY A 48 ASN A 53
AA1 3 VAL A 77 ? SER A 82 ? VAL A 76 SER A 81
AA2 1 LEU B 43 ? LEU B 45 ? LEU B 42 LEU B 44
AA2 2 GLY B 49 ? ARG B 56 ? GLY B 48 ARG B 55
AA2 3 ALA B 75 ? SER B 82 ? ALA B 74 SER B 81
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 N LEU A 43 ? N LEU A 42 O PHE A 51 ? O PHE A 50
AA1 2 3 N THR A 50 ? N THR A 49 O VAL A 81 ? O VAL A 80
AA2 1 2 N LEU B 43 ? N LEU B 42 O PHE B 51 ? O PHE B 50
AA2 2 3 N THR B 50 ? N THR B 49 O VAL B 81 ? O VAL B 80
#
_atom_sites.entry_id 4YF0
_atom_sites.fract_transf_matrix[1][1] 0.013353
_atom_sites.fract_transf_matrix[1][2] 0.007709
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.015419
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.004541
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 HIS 1 0 ? ? ? A . n
A 1 2 MET 2 1 1 MET MET A . n
A 1 3 ASN 3 2 2 ASN ASN A . n
A 1 4 LYS 4 3 3 LYS LYS A . n
A 1 5 THR 5 4 4 THR THR A . n
A 1 6 GLN 6 5 5 GLN GLN A . n
A 1 7 LEU 7 6 6 LEU LEU A . n
A 1 8 ILE 8 7 7 ILE ILE A . n
A 1 9 ASP 9 8 8 ASP ASP A . n
A 1 10 VAL 10 9 9 VAL VAL A . n
A 1 11 ILE 11 10 10 ILE ILE A . n
A 1 12 ALA 12 11 11 ALA ALA A . n
A 1 13 GLU 13 12 12 GLU GLU A . n
A 1 14 LYS 14 13 13 LYS LYS A . n
A 1 15 ALA 15 14 14 ALA ALA A . n
A 1 16 GLU 16 15 15 GLU GLU A . n
A 1 17 LEU 17 16 16 LEU LEU A . n
A 1 18 SER 18 17 17 SER SER A . n
A 1 19 LYS 19 18 18 LYS LYS A . n
A 1 20 THR 20 19 19 THR THR A . n
A 1 21 GLN 21 20 20 GLN GLN A . n
A 1 22 ALA 22 21 21 ALA ALA A . n
A 1 23 LYS 23 22 22 LYS LYS A . n
A 1 24 ALA 24 23 23 ALA ALA A . n
A 1 25 ALA 25 24 24 ALA ALA A . n
A 1 26 LEU 26 25 25 LEU LEU A . n
A 1 27 GLU 27 26 26 GLU GLU A . n
A 1 28 SER 28 27 27 SER SER A . n
A 1 29 THR 29 28 28 THR THR A . n
A 1 30 LEU 30 29 29 LEU LEU A . n
A 1 31 ALA 31 30 30 ALA ALA A . n
A 1 32 ALA 32 31 31 ALA ALA A . n
A 1 33 ILE 33 32 32 ILE ILE A . n
A 1 34 THR 34 33 33 THR THR A . n
A 1 35 GLU 35 34 34 GLU GLU A . n
A 1 36 SER 36 35 35 SER SER A . n
A 1 37 LEU 37 36 36 LEU LEU A . n
A 1 38 LYS 38 37 37 LYS LYS A . n
A 1 39 LYS 39 38 38 LYS LYS A . n
A 1 40 GLY 40 39 39 GLY GLY A . n
A 1 41 ASP 41 40 40 ASP ASP A . n
A 1 42 ALA 42 41 41 ALA ALA A . n
A 1 43 LEU 43 42 42 LEU LEU A . n
A 1 44 GLN 44 43 43 GLN GLN A . n
A 1 45 LEU 45 44 44 LEU LEU A . n
A 1 46 VAL 46 45 45 VAL VAL A . n
A 1 47 GLY 47 46 46 GLY GLY A . n
A 1 48 PHE 48 47 47 PHE PHE A . n
A 1 49 GLY 49 48 48 GLY GLY A . n
A 1 50 THR 50 49 49 THR THR A . n
A 1 51 PHE 51 50 50 PHE PHE A . n
A 1 52 LYS 52 51 51 LYS LYS A . n
A 1 53 VAL 53 52 52 VAL VAL A . n
A 1 54 ASN 54 53 53 ASN ASN A . n
A 1 55 HIS 55 54 54 HIS HIS A . n
A 1 56 ARG 56 55 55 ARG ARG A . n
A 1 57 ALA 57 56 56 ALA ALA A . n
A 1 58 GLU 58 57 57 GLU GLU A . n
A 1 59 ARG 59 58 58 ARG ARG A . n
A 1 60 THR 60 59 ? ? ? A . n
A 1 61 GLY 61 60 ? ? ? A . n
A 1 62 ARG 62 61 ? ? ? A . n
A 1 63 ASN 63 62 ? ? ? A . n
A 1 64 PRO 64 63 ? ? ? A . n
A 1 65 GLN 65 64 ? ? ? A . n
A 1 66 THR 66 65 ? ? ? A . n
A 1 67 GLY 67 66 ? ? ? A . n
A 1 68 LYS 68 67 ? ? ? A . n
A 1 69 GLU 69 68 ? ? ? A . n
A 1 70 ILE 70 69 ? ? ? A . n
A 1 71 LYS 71 70 ? ? ? A . n
A 1 72 ILE 72 71 ? ? ? A . n
A 1 73 ALA 73 72 ? ? ? A . n
A 1 74 ALA 74 73 73 ALA ALA A . n
A 1 75 ALA 75 74 74 ALA ALA A . n
A 1 76 ASN 76 75 75 ASN ASN A . n
A 1 77 VAL 77 76 76 VAL VAL A . n
A 1 78 PRO 78 77 77 PRO PRO A . n
A 1 79 ALA 79 78 78 ALA ALA A . n
A 1 80 PHE 80 79 79 PHE PHE A . n
A 1 81 VAL 81 80 80 VAL VAL A . n
A 1 82 SER 82 81 81 SER SER A . n
A 1 83 GLY 83 82 82 GLY GLY A . n
A 1 84 LYS 84 83 83 LYS LYS A . n
A 1 85 ALA 85 84 84 ALA ALA A . n
A 1 86 LEU 86 85 85 LEU LEU A . n
A 1 87 LYS 87 86 86 LYS LYS A . n
A 1 88 ASP 88 87 87 ASP ASP A . n
A 1 89 ALA 89 88 88 ALA ALA A . n
A 1 90 VAL 90 89 89 VAL VAL A . n
A 1 91 LYS 91 90 90 LYS LYS A . n
B 1 1 HIS 1 0 0 HIS HIS B . n
B 1 2 MET 2 1 1 MET MET B . n
B 1 3 ASN 3 2 2 ASN ASN B . n
B 1 4 LYS 4 3 3 LYS LYS B . n
B 1 5 THR 5 4 4 THR THR B . n
B 1 6 GLN 6 5 5 GLN GLN B . n
B 1 7 LEU 7 6 6 LEU LEU B . n
B 1 8 ILE 8 7 7 ILE ILE B . n
B 1 9 ASP 9 8 8 ASP ASP B . n
B 1 10 VAL 10 9 9 VAL VAL B . n
B 1 11 ILE 11 10 10 ILE ILE B . n
B 1 12 ALA 12 11 11 ALA ALA B . n
B 1 13 GLU 13 12 12 GLU GLU B . n
B 1 14 LYS 14 13 13 LYS LYS B . n
B 1 15 ALA 15 14 14 ALA ALA B . n
B 1 16 GLU 16 15 15 GLU GLU B . n
B 1 17 LEU 17 16 16 LEU LEU B . n
B 1 18 SER 18 17 17 SER SER B . n
B 1 19 LYS 19 18 18 LYS LYS B . n
B 1 20 THR 20 19 19 THR THR B . n
B 1 21 GLN 21 20 20 GLN GLN B . n
B 1 22 ALA 22 21 21 ALA ALA B . n
B 1 23 LYS 23 22 22 LYS LYS B . n
B 1 24 ALA 24 23 23 ALA ALA B . n
B 1 25 ALA 25 24 24 ALA ALA B . n
B 1 26 LEU 26 25 25 LEU LEU B . n
B 1 27 GLU 27 26 26 GLU GLU B . n
B 1 28 SER 28 27 27 SER SER B . n
B 1 29 THR 29 28 28 THR THR B . n
B 1 30 LEU 30 29 29 LEU LEU B . n
B 1 31 ALA 31 30 30 ALA ALA B . n
B 1 32 ALA 32 31 31 ALA ALA B . n
B 1 33 ILE 33 32 32 ILE ILE B . n
B 1 34 THR 34 33 33 THR THR B . n
B 1 35 GLU 35 34 34 GLU GLU B . n
B 1 36 SER 36 35 35 SER SER B . n
B 1 37 LEU 37 36 36 LEU LEU B . n
B 1 38 LYS 38 37 37 LYS LYS B . n
B 1 39 LYS 39 38 38 LYS LYS B . n
B 1 40 GLY 40 39 39 GLY GLY B . n
B 1 41 ASP 41 40 40 ASP ASP B . n
B 1 42 ALA 42 41 41 ALA ALA B . n
B 1 43 LEU 43 42 42 LEU LEU B . n
B 1 44 GLN 44 43 43 GLN GLN B . n
B 1 45 LEU 45 44 44 LEU LEU B . n
B 1 46 VAL 46 45 45 VAL VAL B . n
B 1 47 GLY 47 46 46 GLY GLY B . n
B 1 48 PHE 48 47 47 PHE PHE B . n
B 1 49 GLY 49 48 48 GLY GLY B . n
B 1 50 THR 50 49 49 THR THR B . n
B 1 51 PHE 51 50 50 PHE PHE B . n
B 1 52 LYS 52 51 51 LYS LYS B . n
B 1 53 VAL 53 52 52 VAL VAL B . n
B 1 54 ASN 54 53 53 ASN ASN B . n
B 1 55 HIS 55 54 54 HIS HIS B . n
B 1 56 ARG 56 55 55 ARG ARG B . n
B 1 57 ALA 57 56 56 ALA ALA B . n
B 1 58 GLU 58 57 57 GLU GLU B . n
B 1 59 ARG 59 58 58 ARG ARG B . n
B 1 60 THR 60 59 59 THR THR B . n
B 1 61 GLY 61 60 60 GLY GLY B . n
B 1 62 ARG 62 61 ? ? ? B . n
B 1 63 ASN 63 62 ? ? ? B . n
B 1 64 PRO 64 63 63 PRO PRO B . n
B 1 65 GLN 65 64 64 GLN GLN B . n
B 1 66 THR 66 65 65 THR THR B . n
B 1 67 GLY 67 66 66 GLY GLY B . n
B 1 68 LYS 68 67 67 LYS LYS B . n
B 1 69 GLU 69 68 68 GLU GLU B . n
B 1 70 ILE 70 69 69 ILE ILE B . n
B 1 71 LYS 71 70 70 LYS LYS B . n
B 1 72 ILE 72 71 71 ILE ILE B . n
B 1 73 ALA 73 72 72 ALA ALA B . n
B 1 74 ALA 74 73 73 ALA ALA B . n
B 1 75 ALA 75 74 74 ALA ALA B . n
B 1 76 ASN 76 75 75 ASN ASN B . n
B 1 77 VAL 77 76 76 VAL VAL B . n
B 1 78 PRO 78 77 77 PRO PRO B . n
B 1 79 ALA 79 78 78 ALA ALA B . n
B 1 80 PHE 80 79 79 PHE PHE B . n
B 1 81 VAL 81 80 80 VAL VAL B . n
B 1 82 SER 82 81 81 SER SER B . n
B 1 83 GLY 83 82 82 GLY GLY B . n
B 1 84 LYS 84 83 83 LYS LYS B . n
B 1 85 ALA 85 84 84 ALA ALA B . n
B 1 86 LEU 86 85 85 LEU LEU B . n
B 1 87 LYS 87 86 86 LYS LYS B . n
B 1 88 ASP 88 87 87 ASP ASP B . n
B 1 89 ALA 89 88 88 ALA ALA B . n
B 1 90 VAL 90 89 89 VAL VAL B . n
B 1 91 LYS 91 90 90 LYS LYS B . n
C 2 1 DC 1 1 1 DC C C . n
C 2 2 DC 2 2 2 DC C C . n
C 2 3 DC 3 3 3 DC C C . n
C 2 4 DT 4 4 4 DT T C . n
C 2 5 DT 5 5 5 DT T C . n
C 2 6 DT 6 6 6 DT T C . n
C 2 7 DT 7 7 7 DT T C . n
C 2 8 DC 8 8 8 DC C C . n
C 2 9 DC 9 9 9 DC C C . n
C 2 10 DC 10 10 10 DC C C . n
C 2 11 DC 11 11 11 DC C C . n
D 3 1 DT 1 1 1 DT T D . n
D 3 2 DT 2 2 2 DT T D . n
D 3 3 DT 3 3 3 DT T D . n
D 3 4 DT 4 4 4 DT T D . n
D 3 5 DT 5 5 5 DT T D . n
D 3 6 DT 6 6 6 DT T D . n
D 3 7 DA 7 7 7 DA A D . n
D 3 8 DA 8 8 8 DA A D . n
D 3 9 DT 9 9 9 DT T D . n
D 3 10 DT 10 10 10 DT T D . n
D 3 11 DT 11 11 11 DT T D . n
D 3 12 DT 12 12 12 DT T D . n
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dodecameric
_pdbx_struct_assembly.oligomeric_count 12
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,C,D
1 2 A,B,C,D
1 3 A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038
0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 73.4033333333
3 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 37.4450000000 0.8660254038
-0.5000000000 0.0000000000 -64.8566424894 0.0000000000 0.0000000000 -1.0000000000 36.7016666667
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2016-06-29
2 'Structure model' 1 1 2019-02-20
3 'Structure model' 1 2 2023-09-27
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 2 'Structure model' 'Derived calculations'
4 3 'Structure model' 'Data collection'
5 3 'Structure model' 'Database references'
6 3 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 2 'Structure model' pdbx_struct_oper_list
4 3 'Structure model' chem_comp_atom
5 3 'Structure model' chem_comp_bond
6 3 'Structure model' database_2
7 3 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_CSD'
4 2 'Structure model' '_citation.journal_id_ISSN'
5 2 'Structure model' '_citation.journal_volume'
6 2 'Structure model' '_citation.page_first'
7 2 'Structure model' '_citation.page_last'
8 2 'Structure model' '_citation.pdbx_database_id_DOI'
9 2 'Structure model' '_citation.pdbx_database_id_PubMed'
10 2 'Structure model' '_citation.title'
11 2 'Structure model' '_citation.year'
12 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation'
13 3 'Structure model' '_database_2.pdbx_DOI'
14 3 'Structure model' '_database_2.pdbx_database_accession'
#
loop_
_pdbx_refine_tls.id
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[1][1]_esd
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][2]_esd
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[1][3]_esd
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[2][2]_esd
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.T[2][3]_esd
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[3][3]_esd
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[1][1]_esd
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][2]_esd
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[1][3]_esd
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[2][2]_esd
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.L[2][3]_esd
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[3][3]_esd
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[1][1]_esd
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][2]_esd
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[1][3]_esd
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[2][1]_esd
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[2][2]_esd
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[2][3]_esd
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][1]_esd
_pdbx_refine_tls.S[3][2]
_pdbx_refine_tls.S[3][2]_esd
_pdbx_refine_tls.S[3][3]
_pdbx_refine_tls.S[3][3]_esd
1 'X-RAY DIFFRACTION' ? refined 11.4421 -16.5861 20.1607 0.0018 ? 0.2558 ? -0.2402 ? -0.1027 ? -0.1920 ? 0.0496 ? 4.8828 ?
-1.3144 ? 1.7234 ? 2.3601 ? 1.2916 ? 8.9290 ? 0.4405 ? 0.0656 ? -0.3926 ? -0.2885 ? 0.2953 ? -0.0590 ? 0.9513 ? 0.5292 ?
-0.7358 ?
2 'X-RAY DIFFRACTION' ? refined 16.2586 -13.6941 22.9912 -0.1003 ? 0.1724 ? -0.1372 ? -0.0524 ? -0.1529 ? -0.1121 ? 2.7740 ?
-0.5452 ? -0.0155 ? 3.3728 ? -0.5222 ? 1.8106 ? 0.2221 ? -0.0786 ? 0.0758 ? -0.3140 ? 0.0579 ? -0.0250 ? 0.0733 ? 0.6219 ?
-0.2801 ?
3 'X-RAY DIFFRACTION' ? refined 31.9253 -24.9790 13.2763 0.4972 ? 0.0824 ? -0.0916 ? -0.2357 ? -0.4039 ? -0.2964 ? 5.8835 ?
-2.2390 ? 1.7278 ? -0.1069 ? 3.8975 ? 16.6309 ? -0.2276 ? 0.6512 ? 0.4607 ? -0.1054 ? -0.4692 ? -0.3408 ? -0.1828 ? -0.0450 ?
0.6968 ?
4 'X-RAY DIFFRACTION' ? refined -6.1481 -9.2701 36.7483 -0.1359 ? 0.1232 ? -0.1397 ? -0.1346 ? 0.0240 ? -0.0654 ? 10.3785 ?
0.9110 ? -7.4469 ? 4.3145 ? 2.4218 ? 7.9258 ? -0.1221 ? -0.4552 ? 0.0704 ? 0.2391 ? 0.4693 ? 0.3783 ? 0.5375 ? -0.3025 ?
-0.3473 ?
#
loop_
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.selection_details
1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? A 90 ? '{ A|* }'
2 'X-RAY DIFFRACTION' 2 ? ? B 0 ? ? B 90 ? '{ B|* }'
3 'X-RAY DIFFRACTION' 3 ? ? C 1 ? ? C 11 ? '{ C|* }'
4 'X-RAY DIFFRACTION' 4 ? ? D 1 ? ? D 12 ? '{ D|* }'
#
_phasing.method MR
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER-TNT ? ? ? 'BUSTER 2.10.0' 1
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.11 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4
? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 5
? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.0 6
#
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.entry_id 4YF0
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details
;DNA sample sequence used in experiment is 5'-TTCAATTGTTGTTAACTTG-3'. But the asymmetric unit contains multiple, out-of-register duplex positions, so the DNA chain is modeled according to averaged density.
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 C A ALA 73 ? ? N A ALA 74 ? ? CA A ALA 74 ? ? 140.42 121.70 18.72 2.50 Y
2 1 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.11 108.30 1.81 0.30 N
3 1 "O4'" D DT 10 ? ? "C1'" D DT 10 ? ? N1 D DT 10 ? ? 111.14 108.30 2.84 0.30 N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 HIS A 54 ? ? -95.69 55.42
2 1 ARG A 55 ? ? -65.37 89.09
3 1 ALA A 74 ? ? 164.35 123.17
4 1 MET B 1 ? ? 54.45 114.18
5 1 ARG B 58 ? ? -83.35 -151.16
6 1 THR B 65 ? ? -70.05 20.87
7 1 LYS B 70 ? ? -76.50 -74.76
8 1 ILE B 71 ? ? 69.13 100.03
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A LYS 90 ? CD ? A LYS 91 CD
2 1 Y 1 A LYS 90 ? CE ? A LYS 91 CE
3 1 Y 1 A LYS 90 ? NZ ? A LYS 91 NZ
4 1 Y 1 B LYS 13 ? CD ? B LYS 14 CD
5 1 Y 1 B LYS 13 ? CE ? B LYS 14 CE
6 1 Y 1 B LYS 13 ? NZ ? B LYS 14 NZ
7 1 Y 1 B LYS 18 ? CE ? B LYS 19 CE
8 1 Y 1 B LYS 18 ? NZ ? B LYS 19 NZ
9 1 Y 1 B LYS 51 ? CE ? B LYS 52 CE
10 1 Y 1 B LYS 51 ? NZ ? B LYS 52 NZ
11 1 Y 1 B THR 65 ? OG1 ? B THR 66 OG1
12 1 Y 1 B THR 65 ? CG2 ? B THR 66 CG2
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A HIS 0 ? A HIS 1
2 1 Y 1 A THR 59 ? A THR 60
3 1 Y 1 A GLY 60 ? A GLY 61
4 1 Y 1 A ARG 61 ? A ARG 62
5 1 Y 1 A ASN 62 ? A ASN 63
6 1 Y 1 A PRO 63 ? A PRO 64
7 1 Y 1 A GLN 64 ? A GLN 65
8 1 Y 1 A THR 65 ? A THR 66
9 1 Y 1 A GLY 66 ? A GLY 67
10 1 Y 1 A LYS 67 ? A LYS 68
11 1 Y 1 A GLU 68 ? A GLU 69
12 1 Y 1 A ILE 69 ? A ILE 70
13 1 Y 1 A LYS 70 ? A LYS 71
14 1 Y 1 A ILE 71 ? A ILE 72
15 1 Y 1 A ALA 72 ? A ALA 73
16 1 Y 1 B ARG 61 ? B ARG 62
17 1 Y 1 B ASN 62 ? B ASN 63
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
DA OP3 O N N 74
DA P P N N 75
DA OP1 O N N 76
DA OP2 O N N 77
DA "O5'" O N N 78
DA "C5'" C N N 79
DA "C4'" C N R 80
DA "O4'" O N N 81
DA "C3'" C N S 82
DA "O3'" O N N 83
DA "C2'" C N N 84
DA "C1'" C N R 85
DA N9 N Y N 86
DA C8 C Y N 87
DA N7 N Y N 88
DA C5 C Y N 89
DA C6 C Y N 90
DA N6 N N N 91
DA N1 N Y N 92
DA C2 C Y N 93
DA N3 N Y N 94
DA C4 C Y N 95
DA HOP3 H N N 96
DA HOP2 H N N 97
DA "H5'" H N N 98
DA "H5''" H N N 99
DA "H4'" H N N 100
DA "H3'" H N N 101
DA "HO3'" H N N 102
DA "H2'" H N N 103
DA "H2''" H N N 104
DA "H1'" H N N 105
DA H8 H N N 106
DA H61 H N N 107
DA H62 H N N 108
DA H2 H N N 109
DC OP3 O N N 110
DC P P N N 111
DC OP1 O N N 112
DC OP2 O N N 113
DC "O5'" O N N 114
DC "C5'" C N N 115
DC "C4'" C N R 116
DC "O4'" O N N 117
DC "C3'" C N S 118
DC "O3'" O N N 119
DC "C2'" C N N 120
DC "C1'" C N R 121
DC N1 N N N 122
DC C2 C N N 123
DC O2 O N N 124
DC N3 N N N 125
DC C4 C N N 126
DC N4 N N N 127
DC C5 C N N 128
DC C6 C N N 129
DC HOP3 H N N 130
DC HOP2 H N N 131
DC "H5'" H N N 132
DC "H5''" H N N 133
DC "H4'" H N N 134
DC "H3'" H N N 135
DC "HO3'" H N N 136
DC "H2'" H N N 137
DC "H2''" H N N 138
DC "H1'" H N N 139
DC H41 H N N 140
DC H42 H N N 141
DC H5 H N N 142
DC H6 H N N 143
DT OP3 O N N 144
DT P P N N 145
DT OP1 O N N 146
DT OP2 O N N 147
DT "O5'" O N N 148
DT "C5'" C N N 149
DT "C4'" C N R 150
DT "O4'" O N N 151
DT "C3'" C N S 152
DT "O3'" O N N 153
DT "C2'" C N N 154
DT "C1'" C N R 155
DT N1 N N N 156
DT C2 C N N 157
DT O2 O N N 158
DT N3 N N N 159
DT C4 C N N 160
DT O4 O N N 161
DT C5 C N N 162
DT C7 C N N 163
DT C6 C N N 164
DT HOP3 H N N 165
DT HOP2 H N N 166
DT "H5'" H N N 167
DT "H5''" H N N 168
DT "H4'" H N N 169
DT "H3'" H N N 170
DT "HO3'" H N N 171
DT "H2'" H N N 172
DT "H2''" H N N 173
DT "H1'" H N N 174
DT H3 H N N 175
DT H71 H N N 176
DT H72 H N N 177
DT H73 H N N 178
DT H6 H N N 179
GLN N N N N 180
GLN CA C N S 181
GLN C C N N 182
GLN O O N N 183
GLN CB C N N 184
GLN CG C N N 185
GLN CD C N N 186
GLN OE1 O N N 187
GLN NE2 N N N 188
GLN OXT O N N 189
GLN H H N N 190
GLN H2 H N N 191
GLN HA H N N 192
GLN HB2 H N N 193
GLN HB3 H N N 194
GLN HG2 H N N 195
GLN HG3 H N N 196
GLN HE21 H N N 197
GLN HE22 H N N 198
GLN HXT H N N 199
GLU N N N N 200
GLU CA C N S 201
GLU C C N N 202
GLU O O N N 203
GLU CB C N N 204
GLU CG C N N 205
GLU CD C N N 206
GLU OE1 O N N 207
GLU OE2 O N N 208
GLU OXT O N N 209
GLU H H N N 210
GLU H2 H N N 211
GLU HA H N N 212
GLU HB2 H N N 213
GLU HB3 H N N 214
GLU HG2 H N N 215
GLU HG3 H N N 216
GLU HE2 H N N 217
GLU HXT H N N 218
GLY N N N N 219
GLY CA C N N 220
GLY C C N N 221
GLY O O N N 222
GLY OXT O N N 223
GLY H H N N 224
GLY H2 H N N 225
GLY HA2 H N N 226
GLY HA3 H N N 227
GLY HXT H N N 228
HIS N N N N 229
HIS CA C N S 230
HIS C C N N 231
HIS O O N N 232
HIS CB C N N 233
HIS CG C Y N 234
HIS ND1 N Y N 235
HIS CD2 C Y N 236
HIS CE1 C Y N 237
HIS NE2 N Y N 238
HIS OXT O N N 239
HIS H H N N 240
HIS H2 H N N 241
HIS HA H N N 242
HIS HB2 H N N 243
HIS HB3 H N N 244
HIS HD1 H N N 245
HIS HD2 H N N 246
HIS HE1 H N N 247
HIS HE2 H N N 248
HIS HXT H N N 249
ILE N N N N 250
ILE CA C N S 251
ILE C C N N 252
ILE O O N N 253
ILE CB C N S 254
ILE CG1 C N N 255
ILE CG2 C N N 256
ILE CD1 C N N 257
ILE OXT O N N 258
ILE H H N N 259
ILE H2 H N N 260
ILE HA H N N 261
ILE HB H N N 262
ILE HG12 H N N 263
ILE HG13 H N N 264
ILE HG21 H N N 265
ILE HG22 H N N 266
ILE HG23 H N N 267
ILE HD11 H N N 268
ILE HD12 H N N 269
ILE HD13 H N N 270
ILE HXT H N N 271
LEU N N N N 272
LEU CA C N S 273
LEU C C N N 274
LEU O O N N 275
LEU CB C N N 276
LEU CG C N N 277
LEU CD1 C N N 278
LEU CD2 C N N 279
LEU OXT O N N 280
LEU H H N N 281
LEU H2 H N N 282
LEU HA H N N 283
LEU HB2 H N N 284
LEU HB3 H N N 285
LEU HG H N N 286
LEU HD11 H N N 287
LEU HD12 H N N 288
LEU HD13 H N N 289
LEU HD21 H N N 290
LEU HD22 H N N 291
LEU HD23 H N N 292
LEU HXT H N N 293
LYS N N N N 294
LYS CA C N S 295
LYS C C N N 296
LYS O O N N 297
LYS CB C N N 298
LYS CG C N N 299
LYS CD C N N 300
LYS CE C N N 301
LYS NZ N N N 302
LYS OXT O N N 303
LYS H H N N 304
LYS H2 H N N 305
LYS HA H N N 306
LYS HB2 H N N 307
LYS HB3 H N N 308
LYS HG2 H N N 309
LYS HG3 H N N 310
LYS HD2 H N N 311
LYS HD3 H N N 312
LYS HE2 H N N 313
LYS HE3 H N N 314
LYS HZ1 H N N 315
LYS HZ2 H N N 316
LYS HZ3 H N N 317
LYS HXT H N N 318
MET N N N N 319
MET CA C N S 320
MET C C N N 321
MET O O N N 322
MET CB C N N 323
MET CG C N N 324
MET SD S N N 325
MET CE C N N 326
MET OXT O N N 327
MET H H N N 328
MET H2 H N N 329
MET HA H N N 330
MET HB2 H N N 331
MET HB3 H N N 332
MET HG2 H N N 333
MET HG3 H N N 334
MET HE1 H N N 335
MET HE2 H N N 336
MET HE3 H N N 337
MET HXT H N N 338
PHE N N N N 339
PHE CA C N S 340
PHE C C N N 341
PHE O O N N 342
PHE CB C N N 343
PHE CG C Y N 344
PHE CD1 C Y N 345
PHE CD2 C Y N 346
PHE CE1 C Y N 347
PHE CE2 C Y N 348
PHE CZ C Y N 349
PHE OXT O N N 350
PHE H H N N 351
PHE H2 H N N 352
PHE HA H N N 353
PHE HB2 H N N 354
PHE HB3 H N N 355
PHE HD1 H N N 356
PHE HD2 H N N 357
PHE HE1 H N N 358
PHE HE2 H N N 359
PHE HZ H N N 360
PHE HXT H N N 361
PRO N N N N 362
PRO CA C N S 363
PRO C C N N 364
PRO O O N N 365
PRO CB C N N 366
PRO CG C N N 367
PRO CD C N N 368
PRO OXT O N N 369
PRO H H N N 370
PRO HA H N N 371
PRO HB2 H N N 372
PRO HB3 H N N 373
PRO HG2 H N N 374
PRO HG3 H N N 375
PRO HD2 H N N 376
PRO HD3 H N N 377
PRO HXT H N N 378
SER N N N N 379
SER CA C N S 380
SER C C N N 381
SER O O N N 382
SER CB C N N 383
SER OG O N N 384
SER OXT O N N 385
SER H H N N 386
SER H2 H N N 387
SER HA H N N 388
SER HB2 H N N 389
SER HB3 H N N 390
SER HG H N N 391
SER HXT H N N 392
THR N N N N 393
THR CA C N S 394
THR C C N N 395
THR O O N N 396
THR CB C N R 397
THR OG1 O N N 398
THR CG2 C N N 399
THR OXT O N N 400
THR H H N N 401
THR H2 H N N 402
THR HA H N N 403
THR HB H N N 404
THR HG1 H N N 405
THR HG21 H N N 406
THR HG22 H N N 407
THR HG23 H N N 408
THR HXT H N N 409
VAL N N N N 410
VAL CA C N S 411
VAL C C N N 412
VAL O O N N 413
VAL CB C N N 414
VAL CG1 C N N 415
VAL CG2 C N N 416
VAL OXT O N N 417
VAL H H N N 418
VAL H2 H N N 419
VAL HA H N N 420
VAL HB H N N 421
VAL HG11 H N N 422
VAL HG12 H N N 423
VAL HG13 H N N 424
VAL HG21 H N N 425
VAL HG22 H N N 426
VAL HG23 H N N 427
VAL HXT H N N 428
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
DA OP3 P sing N N 70
DA OP3 HOP3 sing N N 71
DA P OP1 doub N N 72
DA P OP2 sing N N 73
DA P "O5'" sing N N 74
DA OP2 HOP2 sing N N 75
DA "O5'" "C5'" sing N N 76
DA "C5'" "C4'" sing N N 77
DA "C5'" "H5'" sing N N 78
DA "C5'" "H5''" sing N N 79
DA "C4'" "O4'" sing N N 80
DA "C4'" "C3'" sing N N 81
DA "C4'" "H4'" sing N N 82
DA "O4'" "C1'" sing N N 83
DA "C3'" "O3'" sing N N 84
DA "C3'" "C2'" sing N N 85
DA "C3'" "H3'" sing N N 86
DA "O3'" "HO3'" sing N N 87
DA "C2'" "C1'" sing N N 88
DA "C2'" "H2'" sing N N 89
DA "C2'" "H2''" sing N N 90
DA "C1'" N9 sing N N 91
DA "C1'" "H1'" sing N N 92
DA N9 C8 sing Y N 93
DA N9 C4 sing Y N 94
DA C8 N7 doub Y N 95
DA C8 H8 sing N N 96
DA N7 C5 sing Y N 97
DA C5 C6 sing Y N 98
DA C5 C4 doub Y N 99
DA C6 N6 sing N N 100
DA C6 N1 doub Y N 101
DA N6 H61 sing N N 102
DA N6 H62 sing N N 103
DA N1 C2 sing Y N 104
DA C2 N3 doub Y N 105
DA C2 H2 sing N N 106
DA N3 C4 sing Y N 107
DC OP3 P sing N N 108
DC OP3 HOP3 sing N N 109
DC P OP1 doub N N 110
DC P OP2 sing N N 111
DC P "O5'" sing N N 112
DC OP2 HOP2 sing N N 113
DC "O5'" "C5'" sing N N 114
DC "C5'" "C4'" sing N N 115
DC "C5'" "H5'" sing N N 116
DC "C5'" "H5''" sing N N 117
DC "C4'" "O4'" sing N N 118
DC "C4'" "C3'" sing N N 119
DC "C4'" "H4'" sing N N 120
DC "O4'" "C1'" sing N N 121
DC "C3'" "O3'" sing N N 122
DC "C3'" "C2'" sing N N 123
DC "C3'" "H3'" sing N N 124
DC "O3'" "HO3'" sing N N 125
DC "C2'" "C1'" sing N N 126
DC "C2'" "H2'" sing N N 127
DC "C2'" "H2''" sing N N 128
DC "C1'" N1 sing N N 129
DC "C1'" "H1'" sing N N 130
DC N1 C2 sing N N 131
DC N1 C6 sing N N 132
DC C2 O2 doub N N 133
DC C2 N3 sing N N 134
DC N3 C4 doub N N 135
DC C4 N4 sing N N 136
DC C4 C5 sing N N 137
DC N4 H41 sing N N 138
DC N4 H42 sing N N 139
DC C5 C6 doub N N 140
DC C5 H5 sing N N 141
DC C6 H6 sing N N 142
DT OP3 P sing N N 143
DT OP3 HOP3 sing N N 144
DT P OP1 doub N N 145
DT P OP2 sing N N 146
DT P "O5'" sing N N 147
DT OP2 HOP2 sing N N 148
DT "O5'" "C5'" sing N N 149
DT "C5'" "C4'" sing N N 150
DT "C5'" "H5'" sing N N 151
DT "C5'" "H5''" sing N N 152
DT "C4'" "O4'" sing N N 153
DT "C4'" "C3'" sing N N 154
DT "C4'" "H4'" sing N N 155
DT "O4'" "C1'" sing N N 156
DT "C3'" "O3'" sing N N 157
DT "C3'" "C2'" sing N N 158
DT "C3'" "H3'" sing N N 159
DT "O3'" "HO3'" sing N N 160
DT "C2'" "C1'" sing N N 161
DT "C2'" "H2'" sing N N 162
DT "C2'" "H2''" sing N N 163
DT "C1'" N1 sing N N 164
DT "C1'" "H1'" sing N N 165
DT N1 C2 sing N N 166
DT N1 C6 sing N N 167
DT C2 O2 doub N N 168
DT C2 N3 sing N N 169
DT N3 C4 sing N N 170
DT N3 H3 sing N N 171
DT C4 O4 doub N N 172
DT C4 C5 sing N N 173
DT C5 C7 sing N N 174
DT C5 C6 doub N N 175
DT C7 H71 sing N N 176
DT C7 H72 sing N N 177
DT C7 H73 sing N N 178
DT C6 H6 sing N N 179
GLN N CA sing N N 180
GLN N H sing N N 181
GLN N H2 sing N N 182
GLN CA C sing N N 183
GLN CA CB sing N N 184
GLN CA HA sing N N 185
GLN C O doub N N 186
GLN C OXT sing N N 187
GLN CB CG sing N N 188
GLN CB HB2 sing N N 189
GLN CB HB3 sing N N 190
GLN CG CD sing N N 191
GLN CG HG2 sing N N 192
GLN CG HG3 sing N N 193
GLN CD OE1 doub N N 194
GLN CD NE2 sing N N 195
GLN NE2 HE21 sing N N 196
GLN NE2 HE22 sing N N 197
GLN OXT HXT sing N N 198
GLU N CA sing N N 199
GLU N H sing N N 200
GLU N H2 sing N N 201
GLU CA C sing N N 202
GLU CA CB sing N N 203
GLU CA HA sing N N 204
GLU C O doub N N 205
GLU C OXT sing N N 206
GLU CB CG sing N N 207
GLU CB HB2 sing N N 208
GLU CB HB3 sing N N 209
GLU CG CD sing N N 210
GLU CG HG2 sing N N 211
GLU CG HG3 sing N N 212
GLU CD OE1 doub N N 213
GLU CD OE2 sing N N 214
GLU OE2 HE2 sing N N 215
GLU OXT HXT sing N N 216
GLY N CA sing N N 217
GLY N H sing N N 218
GLY N H2 sing N N 219
GLY CA C sing N N 220
GLY CA HA2 sing N N 221
GLY CA HA3 sing N N 222
GLY C O doub N N 223
GLY C OXT sing N N 224
GLY OXT HXT sing N N 225
HIS N CA sing N N 226
HIS N H sing N N 227
HIS N H2 sing N N 228
HIS CA C sing N N 229
HIS CA CB sing N N 230
HIS CA HA sing N N 231
HIS C O doub N N 232
HIS C OXT sing N N 233
HIS CB CG sing N N 234
HIS CB HB2 sing N N 235
HIS CB HB3 sing N N 236
HIS CG ND1 sing Y N 237
HIS CG CD2 doub Y N 238
HIS ND1 CE1 doub Y N 239
HIS ND1 HD1 sing N N 240
HIS CD2 NE2 sing Y N 241
HIS CD2 HD2 sing N N 242
HIS CE1 NE2 sing Y N 243
HIS CE1 HE1 sing N N 244
HIS NE2 HE2 sing N N 245
HIS OXT HXT sing N N 246
ILE N CA sing N N 247
ILE N H sing N N 248
ILE N H2 sing N N 249
ILE CA C sing N N 250
ILE CA CB sing N N 251
ILE CA HA sing N N 252
ILE C O doub N N 253
ILE C OXT sing N N 254
ILE CB CG1 sing N N 255
ILE CB CG2 sing N N 256
ILE CB HB sing N N 257
ILE CG1 CD1 sing N N 258
ILE CG1 HG12 sing N N 259
ILE CG1 HG13 sing N N 260
ILE CG2 HG21 sing N N 261
ILE CG2 HG22 sing N N 262
ILE CG2 HG23 sing N N 263
ILE CD1 HD11 sing N N 264
ILE CD1 HD12 sing N N 265
ILE CD1 HD13 sing N N 266
ILE OXT HXT sing N N 267
LEU N CA sing N N 268
LEU N H sing N N 269
LEU N H2 sing N N 270
LEU CA C sing N N 271
LEU CA CB sing N N 272
LEU CA HA sing N N 273
LEU C O doub N N 274
LEU C OXT sing N N 275
LEU CB CG sing N N 276
LEU CB HB2 sing N N 277
LEU CB HB3 sing N N 278
LEU CG CD1 sing N N 279
LEU CG CD2 sing N N 280
LEU CG HG sing N N 281
LEU CD1 HD11 sing N N 282
LEU CD1 HD12 sing N N 283
LEU CD1 HD13 sing N N 284
LEU CD2 HD21 sing N N 285
LEU CD2 HD22 sing N N 286
LEU CD2 HD23 sing N N 287
LEU OXT HXT sing N N 288
LYS N CA sing N N 289
LYS N H sing N N 290
LYS N H2 sing N N 291
LYS CA C sing N N 292
LYS CA CB sing N N 293
LYS CA HA sing N N 294
LYS C O doub N N 295
LYS C OXT sing N N 296
LYS CB CG sing N N 297
LYS CB HB2 sing N N 298
LYS CB HB3 sing N N 299
LYS CG CD sing N N 300
LYS CG HG2 sing N N 301
LYS CG HG3 sing N N 302
LYS CD CE sing N N 303
LYS CD HD2 sing N N 304
LYS CD HD3 sing N N 305
LYS CE NZ sing N N 306
LYS CE HE2 sing N N 307
LYS CE HE3 sing N N 308
LYS NZ HZ1 sing N N 309
LYS NZ HZ2 sing N N 310
LYS NZ HZ3 sing N N 311
LYS OXT HXT sing N N 312
MET N CA sing N N 313
MET N H sing N N 314
MET N H2 sing N N 315
MET CA C sing N N 316
MET CA CB sing N N 317
MET CA HA sing N N 318
MET C O doub N N 319
MET C OXT sing N N 320
MET CB CG sing N N 321
MET CB HB2 sing N N 322
MET CB HB3 sing N N 323
MET CG SD sing N N 324
MET CG HG2 sing N N 325
MET CG HG3 sing N N 326
MET SD CE sing N N 327
MET CE HE1 sing N N 328
MET CE HE2 sing N N 329
MET CE HE3 sing N N 330
MET OXT HXT sing N N 331
PHE N CA sing N N 332
PHE N H sing N N 333
PHE N H2 sing N N 334
PHE CA C sing N N 335
PHE CA CB sing N N 336
PHE CA HA sing N N 337
PHE C O doub N N 338
PHE C OXT sing N N 339
PHE CB CG sing N N 340
PHE CB HB2 sing N N 341
PHE CB HB3 sing N N 342
PHE CG CD1 doub Y N 343
PHE CG CD2 sing Y N 344
PHE CD1 CE1 sing Y N 345
PHE CD1 HD1 sing N N 346
PHE CD2 CE2 doub Y N 347
PHE CD2 HD2 sing N N 348
PHE CE1 CZ doub Y N 349
PHE CE1 HE1 sing N N 350
PHE CE2 CZ sing Y N 351
PHE CE2 HE2 sing N N 352
PHE CZ HZ sing N N 353
PHE OXT HXT sing N N 354
PRO N CA sing N N 355
PRO N CD sing N N 356
PRO N H sing N N 357
PRO CA C sing N N 358
PRO CA CB sing N N 359
PRO CA HA sing N N 360
PRO C O doub N N 361
PRO C OXT sing N N 362
PRO CB CG sing N N 363
PRO CB HB2 sing N N 364
PRO CB HB3 sing N N 365
PRO CG CD sing N N 366
PRO CG HG2 sing N N 367
PRO CG HG3 sing N N 368
PRO CD HD2 sing N N 369
PRO CD HD3 sing N N 370
PRO OXT HXT sing N N 371
SER N CA sing N N 372
SER N H sing N N 373
SER N H2 sing N N 374
SER CA C sing N N 375
SER CA CB sing N N 376
SER CA HA sing N N 377
SER C O doub N N 378
SER C OXT sing N N 379
SER CB OG sing N N 380
SER CB HB2 sing N N 381
SER CB HB3 sing N N 382
SER OG HG sing N N 383
SER OXT HXT sing N N 384
THR N CA sing N N 385
THR N H sing N N 386
THR N H2 sing N N 387
THR CA C sing N N 388
THR CA CB sing N N 389
THR CA HA sing N N 390
THR C O doub N N 391
THR C OXT sing N N 392
THR CB OG1 sing N N 393
THR CB CG2 sing N N 394
THR CB HB sing N N 395
THR OG1 HG1 sing N N 396
THR CG2 HG21 sing N N 397
THR CG2 HG22 sing N N 398
THR CG2 HG23 sing N N 399
THR OXT HXT sing N N 400
VAL N CA sing N N 401
VAL N H sing N N 402
VAL N H2 sing N N 403
VAL CA C sing N N 404
VAL CA CB sing N N 405
VAL CA HA sing N N 406
VAL C O doub N N 407
VAL C OXT sing N N 408
VAL CB CG1 sing N N 409
VAL CB CG2 sing N N 410
VAL CB HB sing N N 411
VAL CG1 HG11 sing N N 412
VAL CG1 HG12 sing N N 413
VAL CG1 HG13 sing N N 414
VAL CG2 HG21 sing N N 415
VAL CG2 HG22 sing N N 416
VAL CG2 HG23 sing N N 417
VAL OXT HXT sing N N 418
#
_ndb_struct_conf_na.entry_id 4YF0
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 D DT 5 1_555 D DA 8 7_555 -0.546 -0.250 0.175 4.817 -25.497 -5.378 1 D_DT5:DA8_D D 5 ? D 8 ? 20 1
1 D DT 6 1_555 D DA 7 7_555 0.061 -0.216 0.364 -0.866 -14.542 4.529 2 D_DT6:DA7_D D 6 ? D 7 ? 20 1
1 D DA 7 1_555 D DT 6 7_555 -0.061 -0.216 0.364 0.866 -14.542 4.529 3 D_DA7:DT6_D D 7 ? D 6 ? 20 1
1 D DA 8 1_555 D DT 5 7_555 0.546 -0.250 0.175 -4.816 -25.498 -5.378 4 D_DA8:DT5_D D 8 ? D 5 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 D DT 5 1_555 D DA 8 7_555 D DT 6 1_555 D DA 7 7_555 1.145 0.010 3.414 1.597 2.963 35.201 -0.444 -1.637 3.451 4.885 -2.633
35.356 1 DD_DT5DT6:DA7DA8_DD D 5 ? D 8 ? D 6 ? D 7 ?
1 D DT 6 1_555 D DA 7 7_555 D DA 7 1_555 D DT 6 7_555 0.000 0.591 3.099 0.000 7.707 32.663 -0.201 0.000 3.153 13.470 0.000
33.536 2 DD_DT6DA7:DT6DA7_DD D 6 ? D 7 ? D 7 ? D 6 ?
1 D DA 7 1_555 D DT 6 7_555 D DA 8 1_555 D DT 5 7_555 -1.145 0.010 3.414 -1.597 2.963 35.201 -0.444 1.637 3.451 4.885 2.633
35.356 3 DD_DA7DA8:DT5DT6_DD D 7 ? D 6 ? D 8 ? D 5 ?
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1MUL
_pdbx_initial_refinement_model.details ?
#