HEADER HYDROLASE 25-FEB-15 4YFG TITLE CRYSTAL STRUCTURE OF PTP DELTA MEA3/MEB MINUS VARIANT IG1-FN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 21-501; COMPND 5 SYNONYM: R-PTP-DELTA; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PTPRD; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: FREESTYLE 293-F KEYWDS SYNAPSE ORGANIZER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMAGATA,S.FUKAI REVDAT 5 16-OCT-24 4YFG 1 REMARK REVDAT 4 08-NOV-23 4YFG 1 HETSYN REVDAT 3 29-JUL-20 4YFG 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 05-FEB-20 4YFG 1 SOURCE REMARK REVDAT 1 06-MAY-15 4YFG 0 JRNL AUTH A.YAMAGATA,T.YOSHIDA,Y.SATO,S.GOTO-ITO,T.UEMURA,A.MAEDA, JRNL AUTH 2 T.SHIROSHIMA,S.IWASAWA-OKAMOTO,H.MORI,M.MISHINA,S.FUKAI JRNL TITL MECHANISMS OF SPLICING-DEPENDENT TRANS-SYNAPTIC ADHESION BY JRNL TITL 2 PTP DELTA-IL1RAPL1/IL-1RACP FOR SYNAPTIC DIFFERENTIATION. JRNL REF NAT COMMUN V. 6 6926 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25908590 JRNL DOI 10.1038/NCOMMS7926 REMARK 2 REMARK 2 RESOLUTION. 3.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 18639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.292 REMARK 3 R VALUE (WORKING SET) : 0.291 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 6.6723 0.99 2809 167 0.2455 0.2574 REMARK 3 2 6.6723 - 5.2982 0.95 2724 151 0.2884 0.3164 REMARK 3 3 5.2982 - 4.6290 0.94 2708 144 0.2689 0.3025 REMARK 3 4 4.6290 - 4.2061 0.92 2623 145 0.2922 0.3157 REMARK 3 5 4.2061 - 3.9047 0.87 2492 141 0.3178 0.3460 REMARK 3 6 3.9047 - 3.6746 0.81 2348 111 0.3427 0.3958 REMARK 3 7 3.6746 - 3.4906 0.69 1966 110 0.3732 0.3907 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7642 REMARK 3 ANGLE : 1.037 10432 REMARK 3 CHIRALITY : 0.040 1200 REMARK 3 PLANARITY : 0.005 1376 REMARK 3 DIHEDRAL : 15.881 2872 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.2084 9.9145 -7.2971 REMARK 3 T TENSOR REMARK 3 T11: 0.5807 T22: 0.4012 REMARK 3 T33: 0.6017 T12: -0.0115 REMARK 3 T13: -0.0011 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.8152 L22: 0.0963 REMARK 3 L33: 0.8155 L12: -0.0461 REMARK 3 L13: 0.6925 L23: -0.0494 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0512 S13: 0.1240 REMARK 3 S21: -0.0157 S22: 0.0165 S23: 0.0033 REMARK 3 S31: -0.0465 S32: 0.0017 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18642 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.491 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.18900 REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2YD6, 2YD9, 4YFE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% POLYETHYLENE GLYCOL (PEG) 3350, REMARK 280 0.1M AMMONIUM IODIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 509 REMARK 465 HIS B 510 REMARK 465 HIS B 511 REMARK 465 HIS B 512 REMARK 465 HIS B 513 REMARK 465 HIS B 514 REMARK 465 HIS B 515 REMARK 465 LYS A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 136 OG SER B 157 2.13 REMARK 500 NH1 ARG A 181 O GLN A 197 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 67 77.26 41.78 REMARK 500 ASN B 73 97.74 -35.41 REMARK 500 GLN B 74 -89.64 -72.34 REMARK 500 GLU B 100 99.89 -57.90 REMARK 500 ASN B 110 24.74 -75.94 REMARK 500 PHE B 170 -16.96 80.34 REMARK 500 SER B 187 -169.14 -121.83 REMARK 500 GLN B 197 103.27 48.96 REMARK 500 ASP B 290 70.53 56.42 REMARK 500 ALA B 469 -174.39 -69.13 REMARK 500 LYS A 67 108.82 -39.53 REMARK 500 ASN A 73 151.50 179.45 REMARK 500 GLU A 100 100.19 -59.15 REMARK 500 ASN A 110 25.46 -75.19 REMARK 500 PHE A 170 -17.81 80.38 REMARK 500 ILE A 190 159.48 -38.95 REMARK 500 PRO A 275 -70.30 -58.74 REMARK 500 GLU A 276 -36.41 163.04 REMARK 500 ASP A 290 72.26 55.99 REMARK 500 ASN A 394 -169.75 -121.55 REMARK 500 ALA A 469 -173.50 -68.78 REMARK 500 THR A 493 -169.75 -102.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 190 GLY A 191 -145.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YFC RELATED DB: PDB REMARK 900 RELATED ID: 4YFD RELATED DB: PDB REMARK 900 RELATED ID: 4YFE RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF THE PROTEIN WAS BASED ON ISOFORM 9 OF DATABASE UNP REMARK 999 Q64487 DBREF 4YFG B 28 508 UNP Q64487 PTPRD_MOUSE 21 501 DBREF 4YFG A 28 508 UNP Q64487 PTPRD_MOUSE 21 501 SEQADV 4YFG LYS B 509 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS B 510 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS B 511 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS B 512 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS B 513 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS B 514 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS B 515 UNP Q64487 EXPRESSION TAG SEQADV 4YFG LYS A 509 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS A 510 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS A 511 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS A 512 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS A 513 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS A 514 UNP Q64487 EXPRESSION TAG SEQADV 4YFG HIS A 515 UNP Q64487 EXPRESSION TAG SEQRES 1 B 488 GLU THR PRO PRO ARG PHE THR ARG THR PRO VAL ASP GLN SEQRES 2 B 488 THR GLY VAL SER GLY GLY VAL ALA SER PHE ILE CYS GLN SEQRES 3 B 488 ALA THR GLY ASP PRO ARG PRO LYS ILE VAL TRP ASN LYS SEQRES 4 B 488 LYS GLY LYS LYS VAL SER ASN GLN ARG PHE GLU VAL ILE SEQRES 5 B 488 GLU PHE ASP ASP GLY SER GLY SER VAL LEU ARG ILE GLN SEQRES 6 B 488 PRO LEU ARG THR PRO ARG ASP GLU ALA ILE TYR GLU CYS SEQRES 7 B 488 VAL ALA SER ASN ASN VAL GLY GLU ILE SER VAL SER THR SEQRES 8 B 488 ARG LEU THR VAL LEU ARG GLU ASP GLN ILE PRO ARG GLY SEQRES 9 B 488 PHE PRO THR ILE ASP MET GLY PRO GLN LEU LYS VAL VAL SEQRES 10 B 488 GLU ARG THR ARG THR ALA THR MET LEU CYS ALA ALA SER SEQRES 11 B 488 GLY ASN PRO ASP PRO GLU ILE THR TRP PHE LYS ASP PHE SEQRES 12 B 488 LEU PRO VAL ASP THR SER ASN ASN ASN GLY ARG ILE LYS SEQRES 13 B 488 GLN LEU ARG SER GLU SER ILE GLY ALA LEU GLN ILE GLU SEQRES 14 B 488 GLN SER GLU GLU SER ASP GLN GLY LYS TYR GLU CYS VAL SEQRES 15 B 488 ALA THR ASN SER ALA GLY THR ARG TYR SER ALA PRO ALA SEQRES 16 B 488 ASN LEU TYR VAL ARG VAL ARG ARG VAL PRO PRO ARG PHE SEQRES 17 B 488 SER ILE PRO PRO THR ASN HIS GLU ILE MET PRO GLY GLY SEQRES 18 B 488 SER VAL ASN ILE THR CYS VAL ALA VAL GLY SER PRO MET SEQRES 19 B 488 PRO TYR VAL LYS TRP MET LEU GLY ALA GLU ASP LEU THR SEQRES 20 B 488 PRO GLU ASP ASP MET PRO ILE GLY ARG ASN VAL LEU GLU SEQRES 21 B 488 LEU ASN ASP VAL ARG GLN SER ALA ASN TYR THR CYS VAL SEQRES 22 B 488 ALA MET SER THR LEU GLY VAL ILE GLU ALA ILE ALA GLN SEQRES 23 B 488 ILE THR VAL LYS ALA LEU PRO LYS PRO PRO GLY THR PRO SEQRES 24 B 488 VAL VAL THR GLU SER THR ALA THR SER ILE THR LEU THR SEQRES 25 B 488 TRP ASP SER GLY ASN PRO GLU PRO VAL SER TYR TYR ILE SEQRES 26 B 488 ILE GLN HIS LYS PRO LYS ASN SER GLU GLU PRO TYR LYS SEQRES 27 B 488 GLU ILE ASP GLY ILE ALA THR THR ARG TYR SER VAL ALA SEQRES 28 B 488 GLY LEU SER PRO TYR SER ASP TYR GLU PHE ARG VAL VAL SEQRES 29 B 488 ALA VAL ASN ASN ILE GLY ARG GLY PRO ALA SER GLU PRO SEQRES 30 B 488 VAL LEU THR GLN THR SER GLU GLN ALA PRO SER SER ALA SEQRES 31 B 488 PRO ARG ASP VAL GLN ALA ARG MET LEU SER SER THR THR SEQRES 32 B 488 ILE LEU VAL GLN TRP LYS GLU PRO GLU GLU PRO ASN GLY SEQRES 33 B 488 GLN ILE GLN GLY TYR ARG VAL TYR TYR THR MET ASP PRO SEQRES 34 B 488 THR GLN HIS VAL ASN ASN TRP MET LYS HIS ASN VAL ALA SEQRES 35 B 488 ASP SER GLN ILE THR THR ILE GLY ASN LEU VAL PRO GLN SEQRES 36 B 488 LYS THR TYR SER VAL LYS VAL LEU ALA PHE THR SER ILE SEQRES 37 B 488 GLY ASP GLY PRO LEU SER SER ASP ILE GLN VAL ILE THR SEQRES 38 B 488 LYS HIS HIS HIS HIS HIS HIS SEQRES 1 A 488 GLU THR PRO PRO ARG PHE THR ARG THR PRO VAL ASP GLN SEQRES 2 A 488 THR GLY VAL SER GLY GLY VAL ALA SER PHE ILE CYS GLN SEQRES 3 A 488 ALA THR GLY ASP PRO ARG PRO LYS ILE VAL TRP ASN LYS SEQRES 4 A 488 LYS GLY LYS LYS VAL SER ASN GLN ARG PHE GLU VAL ILE SEQRES 5 A 488 GLU PHE ASP ASP GLY SER GLY SER VAL LEU ARG ILE GLN SEQRES 6 A 488 PRO LEU ARG THR PRO ARG ASP GLU ALA ILE TYR GLU CYS SEQRES 7 A 488 VAL ALA SER ASN ASN VAL GLY GLU ILE SER VAL SER THR SEQRES 8 A 488 ARG LEU THR VAL LEU ARG GLU ASP GLN ILE PRO ARG GLY SEQRES 9 A 488 PHE PRO THR ILE ASP MET GLY PRO GLN LEU LYS VAL VAL SEQRES 10 A 488 GLU ARG THR ARG THR ALA THR MET LEU CYS ALA ALA SER SEQRES 11 A 488 GLY ASN PRO ASP PRO GLU ILE THR TRP PHE LYS ASP PHE SEQRES 12 A 488 LEU PRO VAL ASP THR SER ASN ASN ASN GLY ARG ILE LYS SEQRES 13 A 488 GLN LEU ARG SER GLU SER ILE GLY ALA LEU GLN ILE GLU SEQRES 14 A 488 GLN SER GLU GLU SER ASP GLN GLY LYS TYR GLU CYS VAL SEQRES 15 A 488 ALA THR ASN SER ALA GLY THR ARG TYR SER ALA PRO ALA SEQRES 16 A 488 ASN LEU TYR VAL ARG VAL ARG ARG VAL PRO PRO ARG PHE SEQRES 17 A 488 SER ILE PRO PRO THR ASN HIS GLU ILE MET PRO GLY GLY SEQRES 18 A 488 SER VAL ASN ILE THR CYS VAL ALA VAL GLY SER PRO MET SEQRES 19 A 488 PRO TYR VAL LYS TRP MET LEU GLY ALA GLU ASP LEU THR SEQRES 20 A 488 PRO GLU ASP ASP MET PRO ILE GLY ARG ASN VAL LEU GLU SEQRES 21 A 488 LEU ASN ASP VAL ARG GLN SER ALA ASN TYR THR CYS VAL SEQRES 22 A 488 ALA MET SER THR LEU GLY VAL ILE GLU ALA ILE ALA GLN SEQRES 23 A 488 ILE THR VAL LYS ALA LEU PRO LYS PRO PRO GLY THR PRO SEQRES 24 A 488 VAL VAL THR GLU SER THR ALA THR SER ILE THR LEU THR SEQRES 25 A 488 TRP ASP SER GLY ASN PRO GLU PRO VAL SER TYR TYR ILE SEQRES 26 A 488 ILE GLN HIS LYS PRO LYS ASN SER GLU GLU PRO TYR LYS SEQRES 27 A 488 GLU ILE ASP GLY ILE ALA THR THR ARG TYR SER VAL ALA SEQRES 28 A 488 GLY LEU SER PRO TYR SER ASP TYR GLU PHE ARG VAL VAL SEQRES 29 A 488 ALA VAL ASN ASN ILE GLY ARG GLY PRO ALA SER GLU PRO SEQRES 30 A 488 VAL LEU THR GLN THR SER GLU GLN ALA PRO SER SER ALA SEQRES 31 A 488 PRO ARG ASP VAL GLN ALA ARG MET LEU SER SER THR THR SEQRES 32 A 488 ILE LEU VAL GLN TRP LYS GLU PRO GLU GLU PRO ASN GLY SEQRES 33 A 488 GLN ILE GLN GLY TYR ARG VAL TYR TYR THR MET ASP PRO SEQRES 34 A 488 THR GLN HIS VAL ASN ASN TRP MET LYS HIS ASN VAL ALA SEQRES 35 A 488 ASP SER GLN ILE THR THR ILE GLY ASN LEU VAL PRO GLN SEQRES 36 A 488 LYS THR TYR SER VAL LYS VAL LEU ALA PHE THR SER ILE SEQRES 37 A 488 GLY ASP GLY PRO LEU SER SER ASP ILE GLN VAL ILE THR SEQRES 38 A 488 LYS HIS HIS HIS HIS HIS HIS HET NAG B 601 14 HET NAG B 602 14 HET NAG A 601 14 HET NAG A 602 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) HELIX 1 AA1 ARG B 124 ILE B 128 5 5 HELIX 2 AA2 GLU B 199 GLN B 203 5 5 HELIX 3 AA3 HIS B 459 TRP B 463 5 5 HELIX 4 AA4 GLU A 199 GLN A 203 5 5 HELIX 5 AA5 HIS A 459 TRP A 463 5 5 SHEET 1 AA1 4 THR B 29 ARG B 35 0 SHEET 2 AA1 4 ALA B 48 ASP B 57 -1 O THR B 55 N ARG B 32 SHEET 3 AA1 4 GLY B 86 ILE B 91 -1 O ILE B 91 N ALA B 48 SHEET 4 AA1 4 GLU B 77 GLU B 80 -1 N GLU B 77 O ARG B 90 SHEET 1 AA2 5 GLN B 40 VAL B 43 0 SHEET 2 AA2 5 GLY B 112 LEU B 123 1 O THR B 121 N GLY B 42 SHEET 3 AA2 5 ILE B 102 ASN B 109 -1 N TYR B 103 O THR B 118 SHEET 4 AA2 5 LYS B 61 LYS B 66 -1 N ASN B 65 O GLU B 104 SHEET 5 AA2 5 LYS B 69 LYS B 70 -1 O LYS B 69 N LYS B 66 SHEET 1 AA3 4 THR B 134 MET B 137 0 SHEET 2 AA3 4 ALA B 150 SER B 157 -1 O SER B 157 N THR B 134 SHEET 3 AA3 4 ILE B 190 ILE B 195 -1 O GLY B 191 N CYS B 154 SHEET 4 AA3 4 ILE B 182 SER B 187 -1 N LYS B 183 O GLN B 194 SHEET 1 AA4 5 LYS B 142 GLU B 145 0 SHEET 2 AA4 5 ALA B 222 ARG B 227 1 O TYR B 225 N VAL B 144 SHEET 3 AA4 5 GLY B 204 ASN B 212 -1 N TYR B 206 O ALA B 222 SHEET 4 AA4 5 GLU B 163 LYS B 168 -1 N GLU B 163 O THR B 211 SHEET 5 AA4 5 LEU B 171 PRO B 172 -1 O LEU B 171 N LYS B 168 SHEET 1 AA5 4 LYS B 142 GLU B 145 0 SHEET 2 AA5 4 ALA B 222 ARG B 227 1 O TYR B 225 N VAL B 144 SHEET 3 AA5 4 GLY B 204 ASN B 212 -1 N TYR B 206 O ALA B 222 SHEET 4 AA5 4 GLY B 215 TYR B 218 -1 O ARG B 217 N ALA B 210 SHEET 1 AA6 3 ARG B 234 ILE B 237 0 SHEET 2 AA6 3 VAL B 250 VAL B 257 -1 O VAL B 257 N ARG B 234 SHEET 3 AA6 3 ARG B 283 LEU B 288 -1 O LEU B 286 N ILE B 252 SHEET 1 AA7 4 HIS B 242 GLU B 243 0 SHEET 2 AA7 4 GLY B 306 THR B 315 1 O GLN B 313 N HIS B 242 SHEET 3 AA7 4 ALA B 295 SER B 303 -1 N ALA B 295 O ILE B 314 SHEET 4 AA7 4 TYR B 263 MET B 267 -1 N MET B 267 O THR B 298 SHEET 1 AA8 3 VAL B 327 SER B 331 0 SHEET 2 AA8 3 ILE B 336 THR B 339 -1 O THR B 339 N VAL B 327 SHEET 3 AA8 3 ARG B 374 VAL B 377 -1 O TYR B 375 N LEU B 338 SHEET 1 AA9 4 LYS B 365 ILE B 370 0 SHEET 2 AA9 4 TYR B 350 PRO B 357 -1 N TYR B 351 O ILE B 370 SHEET 3 AA9 4 ASP B 385 VAL B 393 -1 O VAL B 391 N ILE B 352 SHEET 4 AA9 4 VAL B 405 GLN B 408 -1 O THR B 407 N TYR B 386 SHEET 1 AB1 3 ARG B 419 MET B 425 0 SHEET 2 AB1 3 ILE B 431 LYS B 436 -1 O LEU B 432 N ARG B 424 SHEET 3 AB1 3 ILE B 473 ILE B 476 -1 O THR B 474 N VAL B 433 SHEET 1 AB2 4 MET B 464 ALA B 469 0 SHEET 2 AB2 4 GLY B 447 THR B 453 -1 N TYR B 448 O VAL B 468 SHEET 3 AB2 4 THR B 484 PHE B 492 -1 O LYS B 488 N TYR B 451 SHEET 4 AB2 4 ILE B 504 ILE B 507 -1 O VAL B 506 N TYR B 485 SHEET 1 AB3 4 THR A 29 ARG A 35 0 SHEET 2 AB3 4 ALA A 48 ASP A 57 -1 O THR A 55 N ARG A 32 SHEET 3 AB3 4 GLY A 86 ILE A 91 -1 O ILE A 91 N ALA A 48 SHEET 4 AB3 4 PHE A 76 GLU A 80 -1 N ILE A 79 O VAL A 88 SHEET 1 AB4 4 GLN A 40 VAL A 43 0 SHEET 2 AB4 4 GLY A 112 LEU A 123 1 O THR A 121 N GLY A 42 SHEET 3 AB4 4 ALA A 101 ASN A 109 -1 N TYR A 103 O THR A 118 SHEET 4 AB4 4 LYS A 61 LYS A 66 -1 N ASN A 65 O GLU A 104 SHEET 1 AB5 2 THR A 134 MET A 137 0 SHEET 2 AB5 2 ALA A 155 SER A 157 -1 O ALA A 155 N MET A 137 SHEET 1 AB6 5 LYS A 142 GLU A 145 0 SHEET 2 AB6 5 ALA A 222 ARG A 227 1 O TYR A 225 N LYS A 142 SHEET 3 AB6 5 GLY A 204 ASN A 212 -1 N TYR A 206 O ALA A 222 SHEET 4 AB6 5 GLU A 163 LYS A 168 -1 N GLU A 163 O THR A 211 SHEET 5 AB6 5 LEU A 171 PRO A 172 -1 O LEU A 171 N LYS A 168 SHEET 1 AB7 4 LYS A 142 GLU A 145 0 SHEET 2 AB7 4 ALA A 222 ARG A 227 1 O TYR A 225 N LYS A 142 SHEET 3 AB7 4 GLY A 204 ASN A 212 -1 N TYR A 206 O ALA A 222 SHEET 4 AB7 4 GLY A 215 TYR A 218 -1 O ARG A 217 N ALA A 210 SHEET 1 AB8 3 ALA A 150 LEU A 153 0 SHEET 2 AB8 3 ALA A 192 ILE A 195 -1 O LEU A 193 N MET A 152 SHEET 3 AB8 3 ILE A 182 LEU A 185 -1 N LEU A 185 O ALA A 192 SHEET 1 AB9 3 ARG A 234 ILE A 237 0 SHEET 2 AB9 3 VAL A 250 VAL A 257 -1 O VAL A 257 N ARG A 234 SHEET 3 AB9 3 ARG A 283 LEU A 288 -1 O LEU A 286 N ILE A 252 SHEET 1 AC1 4 HIS A 242 ILE A 244 0 SHEET 2 AC1 4 GLY A 306 VAL A 316 1 O GLN A 313 N HIS A 242 SHEET 3 AC1 4 ALA A 295 SER A 303 -1 N ALA A 295 O ILE A 314 SHEET 4 AC1 4 TYR A 263 MET A 267 -1 N TYR A 263 O MET A 302 SHEET 1 AC2 3 VAL A 327 SER A 331 0 SHEET 2 AC2 3 ILE A 336 THR A 339 -1 O THR A 337 N GLU A 330 SHEET 3 AC2 3 ARG A 374 VAL A 377 -1 O VAL A 377 N ILE A 336 SHEET 1 AC3 4 LYS A 365 ILE A 370 0 SHEET 2 AC3 4 TYR A 350 PRO A 357 -1 N TYR A 351 O ILE A 370 SHEET 3 AC3 4 ASP A 385 VAL A 393 -1 O GLU A 387 N LYS A 356 SHEET 4 AC3 4 VAL A 405 GLN A 408 -1 O THR A 407 N TYR A 386 SHEET 1 AC4 3 ARG A 419 MET A 425 0 SHEET 2 AC4 3 ILE A 431 LYS A 436 -1 O GLN A 434 N GLN A 422 SHEET 3 AC4 3 ILE A 473 ILE A 476 -1 O THR A 474 N VAL A 433 SHEET 1 AC5 4 MET A 464 ALA A 469 0 SHEET 2 AC5 4 GLY A 447 THR A 453 -1 N VAL A 450 O HIS A 466 SHEET 3 AC5 4 THR A 484 PHE A 492 -1 O LYS A 488 N TYR A 451 SHEET 4 AC5 4 ILE A 504 ILE A 507 -1 O VAL A 506 N TYR A 485 SSBOND 1 CYS B 52 CYS B 105 1555 1555 2.03 SSBOND 2 CYS B 154 CYS B 208 1555 1555 2.03 SSBOND 3 CYS B 254 CYS B 299 1555 1555 2.02 SSBOND 4 CYS A 52 CYS A 105 1555 1555 2.03 SSBOND 5 CYS A 154 CYS A 208 1555 1555 2.03 SSBOND 6 CYS A 254 CYS A 299 1555 1555 2.02 LINK ND2 ASN B 251 C1 NAG B 601 1555 1555 1.44 LINK ND2 ASN B 296 C1 NAG B 602 1555 1555 1.43 LINK ND2 ASN A 251 C1 NAG A 601 1555 1555 1.43 LINK ND2 ASN A 296 C1 NAG A 602 1555 1555 1.44 CISPEP 1 ASP B 57 PRO B 58 0 1.71 CISPEP 2 GLN B 92 PRO B 93 0 -3.18 CISPEP 3 THR B 96 PRO B 97 0 -7.61 CISPEP 4 ASN B 159 PRO B 160 0 -0.84 CISPEP 5 GLY B 247 GLY B 248 0 0.54 CISPEP 6 SER B 259 PRO B 260 0 0.27 CISPEP 7 THR B 274 PRO B 275 0 -0.64 CISPEP 8 ASP A 57 PRO A 58 0 1.72 CISPEP 9 LYS A 67 GLY A 68 0 -14.45 CISPEP 10 GLN A 92 PRO A 93 0 -3.30 CISPEP 11 THR A 96 PRO A 97 0 -4.87 CISPEP 12 ASN A 159 PRO A 160 0 -0.47 CISPEP 13 GLY A 247 GLY A 248 0 -0.37 CISPEP 14 SER A 259 PRO A 260 0 1.05 CRYST1 70.491 72.628 94.407 107.65 94.44 108.47 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014186 0.004739 0.002924 0.00000 SCALE2 0.000000 0.014517 0.005363 0.00000 SCALE3 0.000000 0.000000 0.011326 0.00000