HEADER DNA BINDING PROTEIN/DNA 25-FEB-15 4YFH
TITLE HU38-20BP
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA-BINDING PROTEIN HU-ALPHA;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: HU-2,NS2;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: SYNTHETIC DNA STRAND;
COMPND 8 CHAIN: C;
COMPND 9 ENGINEERED: YES;
COMPND 10 MOL_ID: 3;
COMPND 11 MOLECULE: SYNTHETIC DNA STRAND;
COMPND 12 CHAIN: D;
COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 3 ORGANISM_TAXID: 562;
SOURCE 4 GENE: HUPA, B4000, JW3964;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 MOL_ID: 2;
SOURCE 8 SYNTHETIC: YES;
SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 10 ORGANISM_TAXID: 562;
SOURCE 11 MOL_ID: 3;
SOURCE 12 SYNTHETIC: YES;
SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 14 ORGANISM_TAXID: 562
KEYWDS HU-DNA, TRANSCRIPTION, PATHOGENICITY, DNA BINDING PROTEIN-DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.HAMMEL,F.E.REYES,R.PARPANA,J.A.TAINER,S.ADHYA,D.AMLANJYOTI
REVDAT 4 27-SEP-23 4YFH 1 REMARK
REVDAT 3 20-FEB-19 4YFH 1 JRNL
REVDAT 2 28-MAR-18 4YFH 1 REMARK
REVDAT 1 29-JUN-16 4YFH 0
JRNL AUTH M.HAMMEL,D.AMLANJYOTI,F.E.REYES,J.H.CHEN,R.PARPANA,H.Y.TANG,
JRNL AUTH 2 C.A.LARABELL,J.A.TAINER,S.ADHYA
JRNL TITL HU MULTIMERIZATION SHIFT CONTROLS NUCLEOID COMPACTION.
JRNL REF SCI ADV V. 2 00650 2016
JRNL REFN ESSN 2375-2548
JRNL PMID 27482541
JRNL DOI 10.1126/SCIADV.1600650
REMARK 2
REMARK 2 RESOLUTION. 3.49 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.10.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.49
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.96
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 5194
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.222
REMARK 3 R VALUE (WORKING SET) : 0.220
REMARK 3 FREE R VALUE : 0.265
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120
REMARK 3 FREE R VALUE TEST SET COUNT : 266
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 5
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.49
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.90
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1415
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2173
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1357
REMARK 3 BIN R VALUE (WORKING SET) : 0.2158
REMARK 3 BIN FREE R VALUE : 0.2526
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.10
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 58
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1184
REMARK 3 NUCLEIC ACID ATOMS : 455
REMARK 3 HETEROGEN ATOMS : 0
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.52
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 2.54450
REMARK 3 B22 (A**2) : 2.54450
REMARK 3 B33 (A**2) : -5.08910
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.917
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.540
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 1692 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 2363 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 699 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 31 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 191 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 1692 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 239 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 1809 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.47
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.35
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.03
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 11.5219 -16.0403 19.5672
REMARK 3 T TENSOR
REMARK 3 T11: -0.0595 T22: -0.1396
REMARK 3 T33: -0.1426 T12: 0.1598
REMARK 3 T13: -0.1721 T23: -0.1594
REMARK 3 L TENSOR
REMARK 3 L11: 5.3925 L22: 3.5944
REMARK 3 L33: 6.6299 L12: -2.6002
REMARK 3 L13: 0.6111 L23: -0.9824
REMARK 3 S TENSOR
REMARK 3 S11: 0.3423 S12: -0.0727 S13: -0.2984
REMARK 3 S21: -0.4108 S22: 0.2413 S23: -0.0505
REMARK 3 S31: 0.7851 S32: 0.2503 S33: -0.5836
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 16.2055 -13.3902 23.1059
REMARK 3 T TENSOR
REMARK 3 T11: -0.0220 T22: 0.0769
REMARK 3 T33: -0.2032 T12: 0.1327
REMARK 3 T13: -0.1152 T23: -0.0775
REMARK 3 L TENSOR
REMARK 3 L11: 2.7542 L22: 2.5102
REMARK 3 L33: 0.0000 L12: -0.1433
REMARK 3 L13: 0.2106 L23: -0.6243
REMARK 3 S TENSOR
REMARK 3 S11: 0.1271 S12: -0.1215 S13: -0.0898
REMARK 3 S21: -0.3517 S22: -0.0986 S23: -0.0552
REMARK 3 S31: -0.1109 S32: 0.4638 S33: -0.0285
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 31.9748 -24.9244 13.4770
REMARK 3 T TENSOR
REMARK 3 T11: 0.3029 T22: -0.1878
REMARK 3 T33: -0.2316 T12: 0.0140
REMARK 3 T13: 0.0754 T23: -0.3074
REMARK 3 L TENSOR
REMARK 3 L11: 3.3850 L22: 0.6668
REMARK 3 L33: 14.9937 L12: -1.1240
REMARK 3 L13: -0.5302 L23: 4.4313
REMARK 3 S TENSOR
REMARK 3 S11: -0.2045 S12: 0.5708 S13: 0.5289
REMARK 3 S21: 0.0223 S22: -0.6188 S23: -0.2137
REMARK 3 S31: -0.0660 S32: -0.3158 S33: 0.8233
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { D|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -6.1472 -9.1097 37.0031
REMARK 3 T TENSOR
REMARK 3 T11: 0.0457 T22: 0.1155
REMARK 3 T33: -0.2624 T12: 0.0830
REMARK 3 T13: -0.1105 T23: 0.0746
REMARK 3 L TENSOR
REMARK 3 L11: 6.2028 L22: 3.3385
REMARK 3 L33: 0.0000 L12: 1.5421
REMARK 3 L13: -1.6512 L23: 4.5908
REMARK 3 S TENSOR
REMARK 3 S11: 0.2637 S12: -0.7348 S13: 0.3271
REMARK 3 S21: -0.1961 S22: 0.4313 S23: 0.1061
REMARK 3 S31: 0.6203 S32: -0.2655 S33: -0.6950
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE ASYMMETRIC UNIT OF THE CRYSTAL
REMARK 3 CONTAINS MULTIPLE, OUT-OF-REGISTER DUPLEX POSITIONS, SUCH THAT
REMARK 3 BACKBONES SUPERIMPOSE, BUT BASE IDENTITY DIFFERS. THE DENSITY IS
REMARK 3 AN AVERAGE OF ALL NUCLEOTIDES, AND THE DNA CHAIN WAS BUILT
REMARK 3 ACCORDINGLY.
REMARK 4
REMARK 4 4YFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-15.
REMARK 100 THE DEPOSITION ID IS D_1000207350.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-JAN-13
REMARK 200 TEMPERATURE (KELVIN) : 93.15
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 12.3.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : Q315R
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5242
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.485
REMARK 200 RESOLUTION RANGE LOW (A) : 110.990
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 19.90
REMARK 200 R MERGE (I) : 0.29800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.49
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 21.76
REMARK 200 R MERGE FOR SHELL (I) : 1.92400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.257
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 1MUL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.55
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.8, 30% PEG MME 550,
REMARK 280 0.05 M CACL2, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+5/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.99333
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.98667
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.99000
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 184.98333
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.99667
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.99333
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 147.98667
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 184.98333
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 110.99000
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.99667
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: THE ASYMMETRIC UNIT IS THE SAME AS THE BIOLOGICAL ASSEMBLY
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000
REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.99333
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000
REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 73.99333
REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 37.50500
REMARK 350 BIOMT2 5 0.866025 -0.500000 0.000000 -64.96057
REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 36.99667
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C
REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 7 0.500000 0.866025 0.000000 37.50500
REMARK 350 BIOMT2 7 0.866025 -0.500000 0.000000 -64.96057
REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 36.99667
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ARG A 58
REMARK 465 THR A 59
REMARK 465 GLY A 60
REMARK 465 ARG A 61
REMARK 465 ASN A 62
REMARK 465 PRO A 63
REMARK 465 GLN A 64
REMARK 465 THR A 65
REMARK 465 GLY A 66
REMARK 465 LYS A 67
REMARK 465 GLU A 68
REMARK 465 ILE A 69
REMARK 465 LYS A 70
REMARK 465 ILE A 71
REMARK 465 ALA A 72
REMARK 465 ALA A 73
REMARK 465 GLY B 60
REMARK 465 ARG B 61
REMARK 465 ASN B 62
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ALA A 56 CB
REMARK 470 LYS A 90 CD CE NZ
REMARK 470 LYS B 13 CD CE NZ
REMARK 470 LYS B 18 CE NZ
REMARK 470 LYS B 51 CE NZ
REMARK 470 THR B 65 OG1 CG2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 DC C 1 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES
REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES
REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES
REMARK 500 DC C 3 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES
REMARK 500 DT C 4 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES
REMARK 500 DT C 7 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES
REMARK 500 DT C 7 N3 - C4 - O4 ANGL. DEV. = -3.8 DEGREES
REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES
REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES
REMARK 500 DC C 11 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES
REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES
REMARK 500 DT D 2 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES
REMARK 500 DT D 2 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES
REMARK 500 DT D 5 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES
REMARK 500 DT D 6 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES
REMARK 500 DT D 6 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES
REMARK 500 DT D 6 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 DA D 7 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES
REMARK 500 DA D 8 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES
REMARK 500 DT D 9 C1' - O4' - C4' ANGL. DEV. = -9.9 DEGREES
REMARK 500 DT D 9 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES
REMARK 500 DT D 9 N3 - C2 - O2 ANGL. DEV. = -3.7 DEGREES
REMARK 500 DT D 9 N3 - C4 - O4 ANGL. DEV. = -3.7 DEGREES
REMARK 500 DT D 10 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES
REMARK 500 DT D 11 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 56 -151.66 -86.66
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4YEW RELATED DB: PDB
REMARK 900 RELATED ID: 4YEX RELATED DB: PDB
REMARK 900 RELATED ID: 4YEY RELATED DB: PDB
REMARK 900 RELATED ID: 4YF0 RELATED DB: PDB
REMARK 900 RELATED ID: 4YFT RELATED DB: PDB
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 DNA SAMPLE SEQUENCE USED IN EXPERIMENT IS 5'-GTTCAATTGTTGTTAACTTG-3'
REMARK 999 . BUT THE ASYMMETRIC UNIT CONTAINS MULTIPLE, OUT-OF-REGISTER DUPLEX
REMARK 999 POSITIONS, SO THE DNA CHAIN IS MODELED ACCORDING TO AVERAGED
REMARK 999 DENSITY.
DBREF 4YFH A 1 90 UNP P0ACF2 DBHA_ECO57 1 90
DBREF 4YFH B 1 90 UNP P0ACF2 DBHA_ECO57 1 90
DBREF 4YFH C 1 11 PDB 4YFH 4YFH 1 11
DBREF 4YFH D 1 12 PDB 4YFH 4YFH 1 12
SEQADV 4YFH LYS A 38 UNP P0ACF2 GLU 38 CONFLICT
SEQADV 4YFH LEU A 42 UNP P0ACF2 VAL 42 CONFLICT
SEQADV 4YFH LYS B 38 UNP P0ACF2 GLU 38 CONFLICT
SEQADV 4YFH LEU B 42 UNP P0ACF2 VAL 42 CONFLICT
SEQRES 1 A 90 MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU LYS
SEQRES 2 A 90 ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU GLU
SEQRES 3 A 90 SER THR LEU ALA ALA ILE THR GLU SER LEU LYS LYS GLY
SEQRES 4 A 90 ASP ALA LEU GLN LEU VAL GLY PHE GLY THR PHE LYS VAL
SEQRES 5 A 90 ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN THR
SEQRES 6 A 90 GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO ALA
SEQRES 7 A 90 PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS
SEQRES 1 B 90 MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU LYS
SEQRES 2 B 90 ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU GLU
SEQRES 3 B 90 SER THR LEU ALA ALA ILE THR GLU SER LEU LYS LYS GLY
SEQRES 4 B 90 ASP ALA LEU GLN LEU VAL GLY PHE GLY THR PHE LYS VAL
SEQRES 5 B 90 ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN THR
SEQRES 6 B 90 GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO ALA
SEQRES 7 B 90 PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS
SEQRES 1 C 11 DC DC DC DT DT DT DT DC DC DC DC
SEQRES 1 D 12 DT DT DT DT DT DT DA DA DT DT DT DT
HELIX 1 AA1 ASN A 2 ALA A 14 1 13
HELIX 2 AA2 SER A 17 LYS A 38 1 22
HELIX 3 AA3 GLY A 82 ALA A 88 1 7
HELIX 4 AA4 ASN B 2 ALA B 14 1 13
HELIX 5 AA5 SER B 17 LYS B 38 1 22
HELIX 6 AA6 GLY B 82 ALA B 88 1 7
SHEET 1 AA1 3 LEU A 42 LEU A 44 0
SHEET 2 AA1 3 GLY A 48 HIS A 54 -1 O PHE A 50 N LEU A 42
SHEET 3 AA1 3 ASN A 75 SER A 81 -1 O VAL A 80 N THR A 49
SHEET 1 AA2 3 LEU B 42 LEU B 44 0
SHEET 2 AA2 3 GLY B 48 ARG B 55 -1 O GLY B 48 N LEU B 44
SHEET 3 AA2 3 ALA B 74 SER B 81 -1 O VAL B 80 N THR B 49
CISPEP 1 PRO B 63 GLN B 64 0 -2.88
CRYST1 75.010 75.010 221.980 90.00 90.00 120.00 P 61 2 2 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013332 0.007697 0.000000 0.00000
SCALE2 0.000000 0.015394 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004505 0.00000