HEADER IMMUNE SYSTEM 25-FEB-15 4YFL TITLE CRYSTAL STRUCTURE OF VH1-46 GERMLINE-DERIVED CD4-BINDING SITE-DIRECTED TITLE 2 ANTIBODY 1B2530 IN COMPLEX WITH HIV-1 CLADE A/E 93TH057 GP120 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160,ENVELOPE GLYCOPROTEIN GP160, COMPND 3 ENVELOPE GLYCOPROTEIN GP160; COMPND 4 CHAIN: G, E; COMPND 5 FRAGMENT: UNP RESIDUES 43-122, 201-303, 325-486,UNP RESIDUES 43-122, COMPND 6 201-303, 325-486,UNP RESIDUES 43-122, 201-303, 325-486; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 1B2530 HEAVY CHAIN; COMPND 10 CHAIN: H, F; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 1B2530 LIGHT CHAIN; COMPND 14 CHAIN: L, I; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 VARIANT: DELTA V1V2V3; SOURCE 5 GENE: ENV; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 24 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HIV-1 CD4 BINDING SITE, BROADLY NEUTRALIZING ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.ACHARYA,T.ZHOU,S.MOQUIN,P.D.KWONG REVDAT 6 30-OCT-24 4YFL 1 HETSYN REVDAT 5 29-JUL-20 4YFL 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 04-DEC-19 4YFL 1 SOURCE REMARK REVDAT 3 17-JUN-15 4YFL 1 JRNL REVDAT 2 10-JUN-15 4YFL 1 JRNL REVDAT 1 03-JUN-15 4YFL 0 JRNL AUTH T.ZHOU,R.M.LYNCH,L.CHEN,P.ACHARYA,X.WU,N.A.DORIA-ROSE, JRNL AUTH 2 M.G.JOYCE,D.LINGWOOD,C.SOTO,R.T.BAILER,M.J.ERNANDES,R.KONG, JRNL AUTH 3 N.S.LONGO,M.K.LOUDER,K.MCKEE,S.O'DELL,S.D.SCHMIDT,L.TRAN, JRNL AUTH 4 Z.YANG,A.DRUZ,T.S.LUONGO,S.MOQUIN,S.SRIVATSAN,Y.YANG, JRNL AUTH 5 B.ZHANG,A.ZHENG,M.PANCERA,T.KIRYS,I.S.GEORGIEV,T.GINDIN, JRNL AUTH 6 H.P.PENG,A.S.YANG,J.C.MULLIKIN,M.D.GRAY,L.STAMATATOS, JRNL AUTH 7 D.R.BURTON,W.C.KOFF,M.S.COHEN,B.F.HAYNES,J.P.CASAZZA, JRNL AUTH 8 M.CONNORS,D.CORTI,A.LANZAVECCHIA,Q.J.SATTENTAU,R.A.WEISS, JRNL AUTH 9 A.P.WEST,P.J.BJORKMAN,J.F.SCHEID,M.C.NUSSENZWEIG,L.SHAPIRO, JRNL AUTH10 J.R.MASCOLA,P.D.KWONG JRNL TITL STRUCTURAL REPERTOIRE OF HIV-1-NEUTRALIZING ANTIBODIES JRNL TITL 2 TARGETING THE CD4 SUPERSITE IN 14 DONORS. JRNL REF CELL V. 161 1280 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 26004070 JRNL DOI 10.1016/J.CELL.2015.05.007 REMARK 2 REMARK 2 RESOLUTION. 3.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 24702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.326 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.310 REMARK 3 FREE R VALUE TEST SET COUNT : 1311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.2323 - 6.9796 0.85 2715 162 0.2088 0.2964 REMARK 3 2 6.9796 - 5.5686 0.84 2553 129 0.2821 0.3300 REMARK 3 3 5.5686 - 4.8732 0.84 2565 145 0.2701 0.3060 REMARK 3 4 4.8732 - 4.4314 0.85 2560 141 0.2846 0.3421 REMARK 3 5 4.4314 - 4.1160 0.86 2621 140 0.2990 0.3508 REMARK 3 6 4.1160 - 3.8746 0.87 2617 137 0.3258 0.3497 REMARK 3 7 3.8746 - 3.6815 0.88 2624 139 0.3386 0.3728 REMARK 3 8 3.6815 - 3.5219 0.88 2633 124 0.3528 0.4016 REMARK 3 9 3.5219 - 3.3868 0.84 2515 140 0.3578 0.3934 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 12365 REMARK 3 ANGLE : 1.853 16808 REMARK 3 CHIRALITY : 0.075 1922 REMARK 3 PLANARITY : 0.009 2156 REMARK 3 DIHEDRAL : 13.814 4441 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YFL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24708 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.387 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% W/V PEG 8000, 0.2 M SODIUM ACETATE REMARK 280 AND 0.1 M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.65900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 GLN H 1 REMARK 465 VAL H 2 REMARK 465 SER H 142 REMARK 465 THR H 143 REMARK 465 LEU L 106A REMARK 465 SER L 106B REMARK 465 GLN L 106C REMARK 465 THR L 209 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 GLY E 318 REMARK 465 GLY E 319 REMARK 465 SER E 320 REMARK 465 GLY E 321 REMARK 465 SER E 322 REMARK 465 GLY E 323 REMARK 465 GLN F 1 REMARK 465 VAL F 2 REMARK 465 SER F 130 REMARK 465 THR F 131 REMARK 465 SER F 132 REMARK 465 SER F 215 REMARK 465 GLN I 1 REMARK 465 SER I 2 REMARK 465 ALA I 3 REMARK 465 LEU I 4 REMARK 465 VAL I 105A REMARK 465 LEU I 105B REMARK 465 SER I 105C REMARK 465 GLN I 105D REMARK 465 PRO I 105E REMARK 465 LYS I 105F REMARK 465 ALA I 105G REMARK 465 ALA I 105H REMARK 465 THR I 209 REMARK 465 GLU I 210 REMARK 465 CYS I 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA H 126 O REMARK 470 VAL L 106 CG1 CG2 REMARK 470 PRO L 109 CG CD REMARK 470 LYS L 110 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER L 153 HD2 PRO L 154 1.19 REMARK 500 OE2 GLU L 124 HG1 THR L 131 1.26 REMARK 500 H ALA L 150 O SER L 153 1.28 REMARK 500 N GLN F 3 HA ALA F 24 1.33 REMARK 500 H HIS I 188 HH TYR I 191 1.33 REMARK 500 OG1 THR E 283 H GLY E 473 1.38 REMARK 500 OH TYR H 27 HH TYR H 32 1.45 REMARK 500 HG1 THR I 5 O SER I 24 1.46 REMARK 500 HH21 ARG G 298 O GLY G 441 1.47 REMARK 500 O ILE G 396 H ASN G 404 1.48 REMARK 500 HZ3 LYS F 209 O LYS F 210 1.48 REMARK 500 HE ARG H 38 OE1 GLU H 46 1.49 REMARK 500 O VAL F 48 HG SER F 59 1.50 REMARK 500 HG1 THR E 123 O THR E 430 1.50 REMARK 500 OG1 THR E 257 H HIS E 375 1.51 REMARK 500 HG SER I 22 O ALA I 71 1.51 REMARK 500 H ALA H 101 O PRO H 109 1.51 REMARK 500 O THR E 257 H LEU E 259 1.51 REMARK 500 H SER E 56 O VAL E 75 1.51 REMARK 500 OG1 THR L 181 H GLN L 184 1.52 REMARK 500 O GLY G 222 H ILE G 491 1.52 REMARK 500 H CYS L 193 OE2 GLU L 203 1.53 REMARK 500 O TYR F 194 H VAL F 211 1.54 REMARK 500 O GLU E 268 HD21 ASN E 289 1.54 REMARK 500 HZ2 LYS I 166 O GLN I 167 1.54 REMARK 500 O ILE E 396 H ASN E 404 1.54 REMARK 500 O THR L 181 H TRP L 185 1.54 REMARK 500 H TYR G 217 OG1 THR G 248 1.54 REMARK 500 O ASP G 368 HG1 THR G 372 1.54 REMARK 500 OE2 GLU E 64 HD1 HIS E 66 1.54 REMARK 500 OE1 GLU E 64 H ASN E 67 1.56 REMARK 500 O PHE H 158 HE2 HIS H 212 1.56 REMARK 500 O ASN E 478 HG SER E 481 1.56 REMARK 500 HH21 ARG E 298 O GLY E 441 1.57 REMARK 500 HG SER F 68 O THR F 81 1.57 REMARK 500 OD1 ASN I 27B H GLY I 29 1.57 REMARK 500 HD22 ASN F 197 OD1 ASP F 208 1.57 REMARK 500 HD1 HIS G 375 O PHE G 383 1.57 REMARK 500 OG1 THR I 181 H GLN I 184 1.58 REMARK 500 O ALA L 147 H GLN L 194 1.58 REMARK 500 HG1 THR E 297 OD1 ASN E 444 1.58 REMARK 500 H GLN F 171 O LEU F 175 1.58 REMARK 500 O SER E 264 HE2 HIS E 287 1.58 REMARK 500 OG SER H 139 HZ2 LYS H 141 1.60 REMARK 500 OE2 GLU F 5 OE1 GLN F 23 1.88 REMARK 500 O ASP E 113 NE2 GLN E 117 2.01 REMARK 500 OG SER F 68 OG1 THR F 81 2.01 REMARK 500 OE2 GLU L 124 OG1 THR L 131 2.02 REMARK 500 OG1 THR E 455 O GLY E 471 2.03 REMARK 500 N ALA L 150 O SER L 153 2.04 REMARK 500 REMARK 500 THIS ENTRY HAS 72 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HA LYS H 63 HG SER L 152 2656 0.62 REMARK 500 HB2 SER H 140 HD12 LEU H 182 2646 0.90 REMARK 500 C LYS H 63 OG SER L 152 2656 1.03 REMARK 500 CA LYS H 63 HG SER L 152 2656 1.06 REMARK 500 HA LYS H 63 OG SER L 152 2656 1.21 REMARK 500 HB2 SER H 140 CD1 LEU H 182 2646 1.21 REMARK 500 CB SER H 140 HD12 LEU H 182 2646 1.28 REMARK 500 HG SER H 140 O LEU H 182 2646 1.32 REMARK 500 O THR H 205 HG SER L 179 2646 1.41 REMARK 500 O LYS H 63 HB3 SER L 152 2656 1.53 REMARK 500 HZ2 LYS G 46 OG1 THR L 196 2556 1.56 REMARK 500 HD21 ASN H 209 O LYS L 156 2646 1.58 REMARK 500 OD1 ASP H 90 H ALA L 207 2656 1.58 REMARK 500 O LYS H 63 OG SER L 152 2656 1.62 REMARK 500 O LYS H 63 CB SER L 152 2656 1.84 REMARK 500 C LYS H 63 CB SER L 152 2656 1.95 REMARK 500 NZ LYS H 155 O LEU H 201 2656 1.96 REMARK 500 NH2 ARG H 38 O LYS L 189 2656 1.98 REMARK 500 CB SER H 140 CD1 LEU H 182 2646 2.03 REMARK 500 O THR H 205 OG SER L 179 2646 2.07 REMARK 500 N PHE H 64 OG SER L 152 2656 2.08 REMARK 500 OE1 GLN L 53 OG SER L 168 2556 2.09 REMARK 500 OG1 THR H 205 O GLY L 158 2646 2.14 REMARK 500 OG SER H 140 O LEU H 182 2646 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO G 220 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 PRO G 220 C - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 PRO G 438 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 PRO L 109 N - CA - CB ANGL. DEV. = 8.2 DEGREES REMARK 500 PRO E 438 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN G 88 39.12 37.08 REMARK 500 LEU G 116 64.47 -111.73 REMARK 500 ASP G 211 104.89 -169.00 REMARK 500 GLN G 258 -59.75 67.84 REMARK 500 GLU G 268 -99.75 -130.56 REMARK 500 ASN G 276 95.17 -171.94 REMARK 500 PHE G 391 61.09 -104.56 REMARK 500 ILE G 396 -62.31 -94.11 REMARK 500 THR G 406 107.43 -44.94 REMARK 500 ALA G 460 179.26 -57.60 REMARK 500 THR G 463 -12.86 71.04 REMARK 500 ASN G 474 -179.69 -178.68 REMARK 500 LEU H 4 94.75 -160.82 REMARK 500 SER H 7 132.99 -175.33 REMARK 500 ALA H 10 -71.65 -78.17 REMARK 500 ALA H 16 -151.86 -83.57 REMARK 500 CYS H 22 91.09 -172.18 REMARK 500 PRO H 41 101.04 -56.18 REMARK 500 ARG H 55 -63.92 48.80 REMARK 500 PHE H 64 16.66 -145.07 REMARK 500 SER H 85 68.84 61.80 REMARK 500 ASP H 90 44.00 -89.01 REMARK 500 ARG H 98 -168.95 -105.24 REMARK 500 ALA H 99 136.44 178.86 REMARK 500 SER H 103 -3.51 -147.33 REMARK 500 SER H 105 -163.22 59.36 REMARK 500 ASP H 113 -77.79 -62.20 REMARK 500 ALA H 137 105.50 -53.05 REMARK 500 THR H 147 130.50 179.59 REMARK 500 PRO H 159 -159.10 -100.21 REMARK 500 PRO H 161 -169.58 -117.31 REMARK 500 THR H 172 -9.52 -148.39 REMARK 500 SER L 2 145.66 72.74 REMARK 500 ALA L 3 -163.14 -125.24 REMARK 500 SER L 12 67.87 -68.23 REMARK 500 PRO L 15 56.24 -45.93 REMARK 500 ASN L 27B -136.31 -98.08 REMARK 500 GLN L 38 93.73 -162.61 REMARK 500 GLN L 53 -127.55 -95.51 REMARK 500 PRO L 55 -157.61 -68.32 REMARK 500 LYS L 66 -93.94 -138.15 REMARK 500 SER L 67 141.28 72.86 REMARK 500 SER L 70 75.87 -66.91 REMARK 500 SER L 72 92.89 -168.12 REMARK 500 ASP L 92 46.66 35.56 REMARK 500 THR L 105 -56.46 -120.68 REMARK 500 ALA L 111 -175.41 -57.99 REMARK 500 ASP L 151 -63.52 67.58 REMARK 500 ALA L 157 -175.49 -170.36 REMARK 500 ASN L 170 2.47 59.99 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG E 501 DBREF 4YFL G 44 123 UNP Q0ED31 Q0ED31_9HIV1 43 122 DBREF 4YFL G 199 301 UNP Q0ED31 Q0ED31_9HIV1 201 303 DBREF 4YFL G 324 492 UNP Q0ED31 Q0ED31_9HIV1 325 486 DBREF 4YFL H 1 227 PDB 4YFL 4YFL 1 227 DBREF 4YFL L 1 211 PDB 4YFL 4YFL 1 211 DBREF 4YFL E 44 123 UNP Q0ED31 Q0ED31_9HIV1 43 122 DBREF 4YFL E 199 301 UNP Q0ED31 Q0ED31_9HIV1 201 303 DBREF 4YFL E 324 492 UNP Q0ED31 Q0ED31_9HIV1 325 486 DBREF 4YFL F 1 215 PDB 4YFL 4YFL 1 215 DBREF 4YFL I 1 211 PDB 4YFL 4YFL 1 211 SEQADV 4YFL GLY G 124 UNP Q0ED31 LINKER SEQADV 4YFL GLY G 198 UNP Q0ED31 LINKER SEQADV 4YFL GLY G 318 UNP Q0ED31 LINKER SEQADV 4YFL GLY G 319 UNP Q0ED31 LINKER SEQADV 4YFL SER G 320 UNP Q0ED31 LINKER SEQADV 4YFL GLY G 321 UNP Q0ED31 LINKER SEQADV 4YFL SER G 322 UNP Q0ED31 LINKER SEQADV 4YFL GLY G 323 UNP Q0ED31 LINKER SEQADV 4YFL GLY E 124 UNP Q0ED31 LINKER SEQADV 4YFL GLY E 198 UNP Q0ED31 LINKER SEQADV 4YFL GLY E 318 UNP Q0ED31 LINKER SEQADV 4YFL GLY E 319 UNP Q0ED31 LINKER SEQADV 4YFL SER E 320 UNP Q0ED31 LINKER SEQADV 4YFL GLY E 321 UNP Q0ED31 LINKER SEQADV 4YFL SER E 322 UNP Q0ED31 LINKER SEQADV 4YFL GLY E 323 UNP Q0ED31 LINKER SEQRES 1 G 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 G 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 G 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 G 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 G 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 G 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 G 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 G 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 G 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 G 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 G 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 G 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 G 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 G 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 G 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 G 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 G 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 G 353 ASP LEU GLU ILE THR MET HIS HIS PHE ASN CYS ARG GLY SEQRES 20 G 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 G 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 G 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 G 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 G 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 G 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 G 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 G 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 G 353 ILE GLU SEQRES 1 H 227 GLN VAL GLN LEU GLU GLN SER GLY THR ALA VAL ARG LYS SEQRES 2 H 227 PRO GLY ALA SER VAL THR LEU SER CYS GLN ALA SER GLY SEQRES 3 H 227 TYR ASN PHE VAL LYS TYR ILE ILE HIS TRP VAL ARG GLN SEQRES 4 H 227 LYS PRO GLY LEU GLY PHE GLU TRP VAL GLY MET ILE ASP SEQRES 5 H 227 PRO TYR ARG GLY ARG PRO TRP SER ALA HIS LYS PHE GLN SEQRES 6 H 227 GLY ARG LEU SER LEU SER ARG ASP THR SER MET GLU ILE SEQRES 7 H 227 LEU TYR MET THR LEU THR SER LEU LYS SER ASP ASP THR SEQRES 8 H 227 ALA THR TYR PHE CYS ALA ARG ALA GLU ALA ALA SER ASP SEQRES 9 H 227 SER HIS SER ARG PRO ILE MET PHE ASP HIS TRP GLY GLN SEQRES 10 H 227 GLY SER LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 227 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 227 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 227 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 227 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 227 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 227 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 227 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 227 LYS VAL GLU PRO LYS SER SEQRES 1 L 215 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY ALA SEQRES 2 L 215 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY GLY PRO SEQRES 3 L 215 SER ASN VAL GLY GLY ASN TYR VAL TYR TRP TYR ARG GLN SEQRES 4 L 215 PHE PRO GLY THR ALA PRO THR LEU LEU ILE LEU ARG ASP SEQRES 5 L 215 ASP GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER ALA SEQRES 6 L 215 SER LYS SER GLY ASN SER ALA SER LEU ALA ILE SER GLY SEQRES 7 L 215 LEU ARG PRO ASP ASP GLU GLY PHE TYR PHE CYS ALA THR SEQRES 8 L 215 TYR ASP SER ASP GLY SER ILE ARG LEU PHE GLY GLY GLY SEQRES 9 L 215 THR ALA LEU THR VAL LEU SER GLN PRO LYS ALA ALA PRO SEQRES 10 L 215 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 215 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 215 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 215 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 215 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 215 SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 L 215 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 215 THR VAL ALA PRO THR GLU CYS SEQRES 1 E 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 E 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 E 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 E 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 E 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 E 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 E 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 E 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 E 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 E 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 E 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 E 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 E 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 E 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 E 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 E 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 E 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 E 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 E 353 ASP LEU GLU ILE THR MET HIS HIS PHE ASN CYS ARG GLY SEQRES 20 E 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 E 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 E 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 E 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 E 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 E 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 E 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 E 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 E 353 ILE GLU SEQRES 1 F 227 GLN VAL GLN LEU GLU GLN SER GLY THR ALA VAL ARG LYS SEQRES 2 F 227 PRO GLY ALA SER VAL THR LEU SER CYS GLN ALA SER GLY SEQRES 3 F 227 TYR ASN PHE VAL LYS TYR ILE ILE HIS TRP VAL ARG GLN SEQRES 4 F 227 LYS PRO GLY LEU GLY PHE GLU TRP VAL GLY MET ILE ASP SEQRES 5 F 227 PRO TYR ARG GLY ARG PRO TRP SER ALA HIS LYS PHE GLN SEQRES 6 F 227 GLY ARG LEU SER LEU SER ARG ASP THR SER MET GLU ILE SEQRES 7 F 227 LEU TYR MET THR LEU THR SER LEU LYS SER ASP ASP THR SEQRES 8 F 227 ALA THR TYR PHE CYS ALA ARG ALA GLU ALA ALA SER ASP SEQRES 9 F 227 SER HIS SER ARG PRO ILE MET PHE ASP HIS TRP GLY GLN SEQRES 10 F 227 GLY SER LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 F 227 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 F 227 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 F 227 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 F 227 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 F 227 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 F 227 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 F 227 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 F 227 LYS VAL GLU PRO LYS SER SEQRES 1 I 215 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY ALA SEQRES 2 I 215 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY GLY PRO SEQRES 3 I 215 SER ASN VAL GLY GLY ASN TYR VAL TYR TRP TYR ARG GLN SEQRES 4 I 215 PHE PRO GLY THR ALA PRO THR LEU LEU ILE LEU ARG ASP SEQRES 5 I 215 ASP GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER ALA SEQRES 6 I 215 SER LYS SER GLY ASN SER ALA SER LEU ALA ILE SER GLY SEQRES 7 I 215 LEU ARG PRO ASP ASP GLU GLY PHE TYR PHE CYS ALA THR SEQRES 8 I 215 TYR ASP SER ASP GLY SER ILE ARG LEU PHE GLY GLY GLY SEQRES 9 I 215 THR ALA LEU THR VAL LEU SER GLN PRO LYS ALA ALA PRO SEQRES 10 I 215 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 I 215 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 I 215 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 I 215 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 I 215 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 I 215 SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 I 215 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 I 215 THR VAL ALA PRO THR GLU CYS HET NAG G 501 28 HET NAG G 502 28 HET NAG G 503 28 HET NAG G 504 28 HET NAG G 505 28 HET NAG G 506 28 HET NAG E 501 28 HET NAG E 502 28 HET NAG E 503 28 HET NAG E 504 28 HET NAG E 505 28 HET NAG E 506 28 HET NAG E 507 28 HET NAG E 508 28 HET NAG E 509 28 HET NAG E 510 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 7 NAG 16(C8 H15 N O6) HELIX 1 AA1 GLU G 64 CYS G 74 1 11 HELIX 2 AA2 ASN G 98 LEU G 116 1 19 HELIX 3 AA3 GLY G 335 PHE G 353 1 19 HELIX 4 AA4 ASP G 368 MET G 373 1 6 HELIX 5 AA5 THR G 387 PHE G 391 5 5 HELIX 6 AA6 ASN G 392 ILE G 396 5 5 HELIX 7 AA7 ASN G 474 TYR G 484 1 11 HELIX 8 AA8 TYR H 27 TYR H 32 1 6 HELIX 9 AA9 HIS H 62 GLN H 65 5 4 HELIX 10 AB1 TRP H 166 ALA H 170 5 5 HELIX 11 AB2 SER L 121 ALA L 127 1 7 HELIX 12 AB3 THR L 181 LYS L 186 1 6 HELIX 13 AB4 GLU E 64 CYS E 74 1 11 HELIX 14 AB5 ASN E 99 LEU E 116 1 18 HELIX 15 AB6 GLY E 335 PHE E 353 1 19 HELIX 16 AB7 ASP E 368 MET E 373 1 6 HELIX 17 AB8 THR E 387 PHE E 391 5 5 HELIX 18 AB9 ASN E 392 ILE E 396 5 5 HELIX 19 AC1 ILE E 475 TYR E 484 1 10 HELIX 20 AC2 GLY F 26 VAL F 30 5 5 HELIX 21 AC3 SER I 121 GLN I 126 1 6 HELIX 22 AC4 THR I 181 LYS I 186 1 6 SHEET 1 AA1 4 TRP G 45 ASP G 47 0 SHEET 2 AA1 4 TYR G 486 ILE G 491 -1 O GLN G 490 N LYS G 46 SHEET 3 AA1 4 TYR G 223 CYS G 228 -1 N LEU G 226 O LYS G 487 SHEET 4 AA1 4 VAL G 242 VAL G 245 -1 O SER G 243 N LYS G 227 SHEET 1 AA2 2 PHE G 53 ALA G 55 0 SHEET 2 AA2 2 HIS G 216 CYS G 218 -1 O HIS G 216 N ALA G 55 SHEET 1 AA3 2 GLU G 91 ASN G 94 0 SHEET 2 AA3 2 THR G 236 CYS G 239 -1 O CYS G 239 N GLU G 91 SHEET 1 AA4 4 SER G 199 LYS G 202 0 SHEET 2 AA4 4 VAL G 120 THR G 123 -1 N LYS G 121 O ILE G 201 SHEET 3 AA4 4 GLY G 431 MET G 434 -1 O MET G 434 N VAL G 120 SHEET 4 AA4 4 ILE G 423 MET G 426 -1 N ILE G 424 O ALA G 433 SHEET 1 AA5 5 LEU G 259 LEU G 261 0 SHEET 2 AA5 5 ILE G 443 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 AA5 5 ILE G 284 ARG G 298 -1 N ARG G 298 O ILE G 443 SHEET 4 AA5 5 ASN G 465 PRO G 470 0 SHEET 5 AA5 5 THR G 358 PHE G 361 1 N ILE G 360 O PHE G 468 SHEET 1 AA6 7 ILE G 271 SER G 274 0 SHEET 2 AA6 7 ILE G 284 ARG G 298 -1 O HIS G 287 N ILE G 271 SHEET 3 AA6 7 ILE G 443 ARG G 456 -1 O ILE G 443 N ARG G 298 SHEET 4 AA6 7 LYS G 328 ASN G 334 0 SHEET 5 AA6 7 THR G 413 ILE G 420 -1 O LEU G 416 N CYS G 331 SHEET 6 AA6 7 GLU G 381 CYS G 385 -1 N TYR G 384 O LYS G 419 SHEET 7 AA6 7 HIS G 374 CYS G 378 -1 N PHE G 376 O PHE G 383 SHEET 1 AA7 2 LEU H 4 SER H 7 0 SHEET 2 AA7 2 SER H 21 ALA H 24 -1 O GLN H 23 N GLU H 5 SHEET 1 AA8 2 VAL H 11 ARG H 12 0 SHEET 2 AA8 2 THR H 122 VAL H 123 1 O THR H 122 N ARG H 12 SHEET 1 AA9 4 PRO H 58 SER H 60 0 SHEET 2 AA9 4 GLY H 49 ILE H 51 -1 N MET H 50 O TRP H 59 SHEET 3 AA9 4 ILE H 34 ARG H 38 -1 N ILE H 34 O ILE H 51 SHEET 4 AA9 4 TYR H 94 ALA H 97 -1 O PHE H 95 N VAL H 37 SHEET 1 AB1 2 SER H 69 SER H 71 0 SHEET 2 AB1 2 TYR H 80 THR H 82 -1 O TYR H 80 N SER H 71 SHEET 1 AB2 4 SER H 132 LEU H 136 0 SHEET 2 AB2 4 THR H 147 LYS H 155 -1 O LYS H 155 N SER H 132 SHEET 3 AB2 4 SER H 191 PRO H 197 -1 O VAL H 196 N ALA H 148 SHEET 4 AB2 4 HIS H 176 PHE H 178 -1 N HIS H 176 O VAL H 193 SHEET 1 AB3 2 TYR H 206 HIS H 212 0 SHEET 2 AB3 2 THR H 217 VAL H 223 -1 O VAL H 219 N VAL H 210 SHEET 1 AB4 3 VAL L 19 ILE L 21 0 SHEET 2 AB4 3 LEU L 73 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 3 AB4 3 SER L 63 ALA L 64 -1 N SER L 63 O ALA L 74 SHEET 1 AB5 2 TYR L 34 TRP L 35 0 SHEET 2 AB5 2 CYS L 88 ALA L 89 -1 O ALA L 89 N TYR L 34 SHEET 1 AB6 2 PHE L 85 TYR L 86 0 SHEET 2 AB6 2 THR L 102 ALA L 103 -1 O THR L 102 N TYR L 86 SHEET 1 AB7 3 THR L 116 PHE L 118 0 SHEET 2 AB7 3 VAL L 133 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB7 3 TYR L 172 SER L 176 -1 O SER L 176 N CYS L 134 SHEET 1 AB8 2 LYS L 149 ALA L 150 0 SHEET 2 AB8 2 SER L 153 PRO L 154 -1 O SER L 153 N ALA L 150 SHEET 1 AB9 2 PHE E 53 ALA E 55 0 SHEET 2 AB9 2 HIS E 216 CYS E 218 -1 O HIS E 216 N ALA E 55 SHEET 1 AC1 4 GLU E 83 LEU E 86 0 SHEET 2 AC1 4 VAL E 242 VAL E 245 -1 O VAL E 242 N LEU E 86 SHEET 3 AC1 4 TYR E 223 CYS E 228 -1 N LYS E 227 O SER E 243 SHEET 4 AC1 4 TYR E 486 GLN E 490 -1 O LYS E 487 N LEU E 226 SHEET 1 AC2 2 GLU E 91 ASN E 94 0 SHEET 2 AC2 2 THR E 236 CYS E 239 -1 O CYS E 239 N GLU E 91 SHEET 1 AC3 4 SER E 199 LYS E 202 0 SHEET 2 AC3 4 VAL E 120 THR E 123 -1 N LYS E 121 O ILE E 201 SHEET 3 AC3 4 GLN E 432 MET E 434 -1 O GLN E 432 N LEU E 122 SHEET 4 AC3 4 ILE E 423 ASN E 425 -1 N ILE E 424 O ALA E 433 SHEET 1 AC4 5 LEU E 259 LEU E 261 0 SHEET 2 AC4 5 ILE E 443 ARG E 456 -1 O GLY E 451 N LEU E 260 SHEET 3 AC4 5 ILE E 284 ARG E 298 -1 N ARG E 298 O ILE E 443 SHEET 4 AC4 5 ASN E 465 PRO E 470 0 SHEET 5 AC4 5 THR E 358 PHE E 361 1 N ILE E 360 O PHE E 468 SHEET 1 AC5 7 ILE E 271 ARG E 273 0 SHEET 2 AC5 7 ILE E 284 ARG E 298 -1 O HIS E 287 N ILE E 271 SHEET 3 AC5 7 ILE E 443 ARG E 456 -1 O ILE E 443 N ARG E 298 SHEET 4 AC5 7 LYS E 328 ASN E 334 0 SHEET 5 AC5 7 THR E 413 ILE E 420 -1 O CYS E 418 N ALA E 329 SHEET 6 AC5 7 GLU E 381 CYS E 385 -1 N TYR E 384 O LYS E 419 SHEET 7 AC5 7 HIS E 374 CYS E 378 -1 N PHE E 376 O PHE E 383 SHEET 1 AC6 4 GLU F 5 SER F 7 0 SHEET 2 AC6 4 LEU F 20 GLN F 23 -1 O GLN F 23 N GLU F 5 SHEET 3 AC6 4 ILE F 77 LEU F 82 -1 O MET F 80 N LEU F 20 SHEET 4 AC6 4 LEU F 67 SER F 68 -1 N SER F 68 O THR F 81 SHEET 1 AC7 4 GLU F 5 SER F 7 0 SHEET 2 AC7 4 LEU F 20 GLN F 23 -1 O GLN F 23 N GLU F 5 SHEET 3 AC7 4 ILE F 77 LEU F 82 -1 O MET F 80 N LEU F 20 SHEET 4 AC7 4 ARG F 71 ASP F 72 -1 N ASP F 72 O ILE F 77 SHEET 1 AC8 4 PRO F 57 SER F 59 0 SHEET 2 AC8 4 GLU F 46 ILE F 51 -1 N MET F 50 O TRP F 58 SHEET 3 AC8 4 HIS F 35 GLN F 39 -1 N TRP F 36 O GLY F 49 SHEET 4 AC8 4 THR F 89 ALA F 93 -1 O ALA F 93 N HIS F 35 SHEET 1 AC9 4 SER F 120 PHE F 122 0 SHEET 2 AC9 4 ALA F 136 TYR F 145 -1 O LYS F 143 N SER F 120 SHEET 3 AC9 4 TYR F 176 VAL F 184 -1 O VAL F 182 N LEU F 138 SHEET 4 AC9 4 HIS F 164 PHE F 166 -1 N PHE F 166 O SER F 179 SHEET 1 AD1 3 VAL F 152 TRP F 154 0 SHEET 2 AD1 3 TYR F 194 HIS F 200 -1 O ASN F 197 N SER F 153 SHEET 3 AD1 3 THR F 205 VAL F 211 -1 O VAL F 211 N TYR F 194 SHEET 1 AD2 2 VAL I 19 SER I 24 0 SHEET 2 AD2 2 SER I 70 ILE I 75 -1 O LEU I 73 N ILE I 21 SHEET 1 AD3 3 THR I 45 LEU I 46 0 SHEET 2 AD3 3 VAL I 33 ARG I 37 -1 N ARG I 37 O THR I 45 SHEET 3 AD3 3 CYS I 88 THR I 90 -1 O ALA I 89 N TYR I 34 SHEET 1 AD4 2 PHE I 85 TYR I 86 0 SHEET 2 AD4 2 THR I 102 ALA I 103 -1 O THR I 102 N TYR I 86 SHEET 1 AD5 4 LEU I 117 PHE I 118 0 SHEET 2 AD5 4 ALA I 130 CYS I 134 -1 O VAL I 133 N PHE I 118 SHEET 3 AD5 4 SER I 176 LEU I 180 -1 O LEU I 180 N ALA I 130 SHEET 4 AD5 4 VAL I 159 THR I 161 -1 N GLU I 160 O TYR I 177 SHEET 1 AD6 2 ILE I 136 PHE I 139 0 SHEET 2 AD6 2 TYR I 172 ALA I 174 -1 O TYR I 172 N PHE I 139 SHEET 1 AD7 3 VAL I 144 THR I 145 0 SHEET 2 AD7 3 GLN I 194 HIS I 197 -1 O THR I 196 N THR I 145 SHEET 3 AD7 3 SER I 200 GLU I 203 -1 O VAL I 202 N VAL I 195 SHEET 1 AD8 2 LYS I 149 ALA I 150 0 SHEET 2 AD8 2 SER I 153 PRO I 154 -1 O SER I 153 N ALA I 150 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.04 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.02 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.04 SSBOND 4 CYS G 228 CYS G 239 1555 1555 2.03 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.02 SSBOND 6 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 7 CYS G 385 CYS G 418 1555 1555 2.05 SSBOND 8 CYS G 395 CYS G 410 1555 1555 2.02 SSBOND 9 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 10 CYS H 152 CYS H 208 1555 1555 2.03 SSBOND 11 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 12 CYS L 134 CYS L 193 1555 1555 2.03 SSBOND 13 CYS E 54 CYS E 74 1555 1555 2.04 SSBOND 14 CYS E 119 CYS E 205 1555 1555 2.04 SSBOND 15 CYS E 218 CYS E 247 1555 1555 2.04 SSBOND 16 CYS E 228 CYS E 239 1555 1555 2.04 SSBOND 17 CYS E 296 CYS E 331 1555 1555 2.04 SSBOND 18 CYS E 378 CYS E 445 1555 1555 2.03 SSBOND 19 CYS E 385 CYS E 418 1555 1555 2.03 SSBOND 20 CYS E 395 CYS E 410 1555 1555 2.03 SSBOND 21 CYS F 22 CYS F 92 1555 1555 2.04 SSBOND 22 CYS F 140 CYS F 196 1555 1555 2.03 SSBOND 23 CYS I 23 CYS I 88 1555 1555 2.04 SSBOND 24 CYS I 134 CYS I 193 1555 1555 2.03 LINK ND2 ASN G 241 C1 NAG G 501 1555 1555 1.45 LINK ND2 ASN G 262 C1 NAG G 502 1555 1555 1.44 LINK ND2 ASN G 289 C1 NAG G 503 1555 1555 1.47 LINK ND2 ASN G 295 C1 NAG G 504 1555 1555 1.42 LINK ND2 ASN G 334 C1 NAG G 505 1555 1555 1.43 LINK ND2 ASN G 392 C1 NAG G 506 1555 1555 1.45 LINK CA LYS H 63 OG SER L 152 1555 2656 1.20 LINK ND2 ASN E 234 C1 NAG E 502 1555 1555 1.44 LINK ND2 ASN E 241 C1 NAG E 503 1555 1555 1.45 LINK ND2 ASN E 276 C1 NAG E 504 1555 1555 1.43 LINK ND2 ASN E 289 C1 NAG E 505 1555 1555 1.43 LINK ND2 ASN E 295 C1 NAG E 506 1555 1555 1.43 LINK ND2 ASN E 334 C1 NAG E 507 1555 1555 1.42 LINK ND2 ASN E 386 C1 NAG E 508 1555 1555 1.44 LINK ND2 ASN E 392 C1 NAG E 509 1555 1555 1.41 LINK ND2 ASN E 411 C1 NAG E 510 1555 1555 1.43 CISPEP 1 PHE H 158 PRO H 159 0 1.63 CISPEP 2 GLU H 160 PRO H 161 0 -14.47 CISPEP 3 SER L 9 ALA L 11 0 1.67 CISPEP 4 GLY L 29 GLY L 30 0 -8.13 CISPEP 5 GLY L 95 SER L 95A 0 9.05 CISPEP 6 SER L 95A ILE L 95B 0 -12.49 CISPEP 7 ALA L 111 ALA L 112 0 10.22 CISPEP 8 TYR L 140 PRO L 141 0 5.86 CISPEP 9 PHE F 146 PRO F 147 0 -0.23 CISPEP 10 GLU F 148 PRO F 149 0 -16.71 CISPEP 11 SER I 9 ALA I 11 0 0.00 CISPEP 12 GLY I 29 GLY I 30 0 -10.14 CISPEP 13 GLY I 95 SER I 95A 0 6.96 CISPEP 14 SER I 95A ILE I 95B 0 -6.85 CISPEP 15 TYR I 140 PRO I 141 0 -2.76 CRYST1 66.962 57.318 254.715 90.00 90.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014934 0.000000 0.000028 0.00000 SCALE2 0.000000 0.017447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003926 0.00000