HEADER HYDROLASE 25-FEB-15 4YFM TITLE CLASS A BETA-LACTAMASE FROM MYCOBACTERIUM ABSCESSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 GENE: LA62_14585; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-TEV KEYWDS BETA-LACTAMASE, CLAVULANATE, CARBAPENEM, MYCOBACTERIUM TUBERCULOSIS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SOROKA,I.LI DE LA SIERRA-GALLAY,V.DUBEE,H.VAN TILBEURGH,M.ARTHUR REVDAT 3 10-JAN-24 4YFM 1 REMARK REVDAT 2 26-AUG-15 4YFM 1 JRNL REVDAT 1 22-JUL-15 4YFM 0 JRNL AUTH D.SOROKA,I.LI DE LA SIERRA-GALLAY,V.DUBEE,S.TRIBOULET, JRNL AUTH 2 H.VAN TILBEURGH,F.COMPAIN,L.BALLELL,D.BARROS,J.L.MAINARDI, JRNL AUTH 3 J.E.HUGONNET,M.ARTHUR JRNL TITL HYDROLYSIS OF CLAVULANATE BY MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 BETA-LACTAMASE BLAC HARBORING A CANONICAL SDN MOTIF. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 59 5714 2015 JRNL REFN ESSN 1098-6596 JRNL PMID 26149997 JRNL DOI 10.1128/AAC.00598-15 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 89195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4695 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4473 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3952 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 469 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.68000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.224 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4030 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3900 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5472 ; 2.027 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8960 ; 0.948 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 518 ; 5.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;36.002 ;23.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 680 ;11.295 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.086 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 646 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4560 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 864 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2080 ; 1.617 ; 1.571 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2077 ; 1.496 ; 1.569 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2594 ; 2.123 ; 2.352 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2595 ; 2.123 ; 2.353 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1950 ; 3.320 ; 1.916 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1950 ; 3.309 ; 1.916 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2879 ; 4.850 ; 2.740 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4904 ; 6.189 ;14.415 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4697 ; 5.950 ;13.704 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : XSCALE NOVEMBER 3, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93890 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 41.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GDN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 0.1 MES (PH REMARK 280 6.5), 32% POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.60500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 GLU A 22 REMARK 465 ASN A 23 REMARK 465 LEU A 24 REMARK 465 TYR A 25 REMARK 465 PHE A 26 REMARK 465 GLN A 27 REMARK 465 GLY A 28 REMARK 465 HIS A 29 REMARK 465 MET B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 GLU B 22 REMARK 465 ASN B 23 REMARK 465 LEU B 24 REMARK 465 TYR B 25 REMARK 465 PHE B 26 REMARK 465 GLN B 27 REMARK 465 GLY B 28 REMARK 465 HIS B 29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 428 O HOH B 464 1.75 REMARK 500 O HOH A 461 O HOH A 467 1.75 REMARK 500 O HOH A 404 O HOH A 455 2.08 REMARK 500 O HOH A 607 O HOH A 641 2.09 REMARK 500 NH2 ARG B 190 O HOH B 401 2.10 REMARK 500 O HOH A 478 O HOH A 617 2.13 REMARK 500 O HOH A 421 O HOH A 460 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 129 NE - CZ - NH1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 129 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 190 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 190 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 203 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 203 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 84 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 190 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 190 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 203 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 203 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 221 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 266 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 70 -141.05 47.57 REMARK 500 ALA A 107 62.41 -151.67 REMARK 500 ASP A 164 -38.95 -138.89 REMARK 500 ASP A 195 -147.22 -104.15 REMARK 500 SER A 219 -124.03 -107.46 REMARK 500 CYS B 70 -141.50 47.94 REMARK 500 ALA B 107 66.16 -150.26 REMARK 500 ASP B 164 -37.21 -138.39 REMARK 500 ASP B 195 -146.26 -101.10 REMARK 500 SER B 219 -127.92 -107.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 DBREF1 4YFM A 31 289 UNP A0A089SRR3_MYCAB DBREF2 4YFM A A0A089SRR3 31 289 DBREF1 4YFM B 31 289 UNP A0A089SRR3_MYCAB DBREF2 4YFM B A0A089SRR3 31 289 SEQADV 4YFM MET A 15 UNP A0A089SRR INITIATING METHIONINE SEQADV 4YFM HIS A 16 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS A 17 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS A 18 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS A 19 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS A 20 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS A 21 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM GLU A 22 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM ASN A 23 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM LEU A 24 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM TYR A 25 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM PHE A 26 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM GLN A 27 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM GLY A 28 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS A 29 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM MET A 30 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM MET B 15 UNP A0A089SRR INITIATING METHIONINE SEQADV 4YFM HIS B 16 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS B 17 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS B 18 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS B 19 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS B 20 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS B 21 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM GLU B 22 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM ASN B 23 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM LEU B 24 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM TYR B 25 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM PHE B 26 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM GLN B 27 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM GLY B 28 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM HIS B 29 UNP A0A089SRR EXPRESSION TAG SEQADV 4YFM MET B 30 UNP A0A089SRR EXPRESSION TAG SEQRES 1 A 275 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 275 GLY HIS MET ALA PRO ASP GLU LEU ALA SER LEU GLU LYS SEQRES 3 A 275 ASP PHE GLY GLY ARG ILE GLY VAL TYR ALA LEU ASP THR SEQRES 4 A 275 GLY SER GLY ASP THR VAL GLY HIS ARG ALA ASP GLU ARG SEQRES 5 A 275 PHE LEU MET CYS SER THR VAL LYS THR PHE ILE VAL SER SEQRES 6 A 275 ALA ILE LEU ARG ARG ARG LEU SER GLU PRO GLY LEU LEU SEQRES 7 A 275 ASP GLN ARG ILE GLN TYR THR GLN SER ASP VAL LEU GLU SEQRES 8 A 275 TRP ALA PRO ILE THR SER GLN HIS VAL SER THR GLY MET SEQRES 9 A 275 THR VAL SER GLU LEU CYS ASP ALA THR LEU ARG TYR SER SEQRES 10 A 275 ASP ASN THR GLY ALA ASN LEU LEU ILE THR GLN LEU GLY SEQRES 11 A 275 GLY PRO LYS GLU THR GLU LYS PHE VAL ARG SER LEU GLY SEQRES 12 A 275 ASP ASN VAL THR ARG MET ASP ARG THR GLU VAL GLN LEU SEQRES 13 A 275 ASN ILE PRO ASP GLY ASP LEU ASP THR SER THR PRO GLN SEQRES 14 A 275 GLN LEU VAL ALA ASN LEU ARG ARG LEU VAL LEU ASP GLU SEQRES 15 A 275 GLY LEU ASP SER ARG GLY ARG ASP LEU LEU THR ASP TRP SEQRES 16 A 275 LEU LYS ARG ASN THR THR GLY ASP GLN SER ILE ARG ALA SEQRES 17 A 275 ALA VAL PRO ALA GLY TRP THR VAL ALA ASP LYS THR GLY SEQRES 18 A 275 GLY GLY PHE LYS GLY GLU THR ASN ASP ILE ALA VAL ILE SEQRES 19 A 275 TRP PRO PRO GLY ARG ALA PRO ILE VAL MET ALA VAL LEU SEQRES 20 A 275 THR VAL PRO GLU ASP PRO THR SER THR LYS GLY LYS PRO SEQRES 21 A 275 THR ILE ALA ALA ALA THR ARG ILE VAL LEU ARG ALA PHE SEQRES 22 A 275 GLY ALA SEQRES 1 B 275 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 B 275 GLY HIS MET ALA PRO ASP GLU LEU ALA SER LEU GLU LYS SEQRES 3 B 275 ASP PHE GLY GLY ARG ILE GLY VAL TYR ALA LEU ASP THR SEQRES 4 B 275 GLY SER GLY ASP THR VAL GLY HIS ARG ALA ASP GLU ARG SEQRES 5 B 275 PHE LEU MET CYS SER THR VAL LYS THR PHE ILE VAL SER SEQRES 6 B 275 ALA ILE LEU ARG ARG ARG LEU SER GLU PRO GLY LEU LEU SEQRES 7 B 275 ASP GLN ARG ILE GLN TYR THR GLN SER ASP VAL LEU GLU SEQRES 8 B 275 TRP ALA PRO ILE THR SER GLN HIS VAL SER THR GLY MET SEQRES 9 B 275 THR VAL SER GLU LEU CYS ASP ALA THR LEU ARG TYR SER SEQRES 10 B 275 ASP ASN THR GLY ALA ASN LEU LEU ILE THR GLN LEU GLY SEQRES 11 B 275 GLY PRO LYS GLU THR GLU LYS PHE VAL ARG SER LEU GLY SEQRES 12 B 275 ASP ASN VAL THR ARG MET ASP ARG THR GLU VAL GLN LEU SEQRES 13 B 275 ASN ILE PRO ASP GLY ASP LEU ASP THR SER THR PRO GLN SEQRES 14 B 275 GLN LEU VAL ALA ASN LEU ARG ARG LEU VAL LEU ASP GLU SEQRES 15 B 275 GLY LEU ASP SER ARG GLY ARG ASP LEU LEU THR ASP TRP SEQRES 16 B 275 LEU LYS ARG ASN THR THR GLY ASP GLN SER ILE ARG ALA SEQRES 17 B 275 ALA VAL PRO ALA GLY TRP THR VAL ALA ASP LYS THR GLY SEQRES 18 B 275 GLY GLY PHE LYS GLY GLU THR ASN ASP ILE ALA VAL ILE SEQRES 19 B 275 TRP PRO PRO GLY ARG ALA PRO ILE VAL MET ALA VAL LEU SEQRES 20 B 275 THR VAL PRO GLU ASP PRO THR SER THR LYS GLY LYS PRO SEQRES 21 B 275 THR ILE ALA ALA ALA THR ARG ILE VAL LEU ARG ALA PHE SEQRES 22 B 275 GLY ALA HET ACT A 301 4 HET GOL A 302 6 HET ACT B 301 4 HET GOL B 302 6 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *469(H2 O) HELIX 1 AA1 MET A 30 GLY A 43 1 14 HELIX 2 AA2 CYS A 70 THR A 72 5 3 HELIX 3 AA3 VAL A 73 ARG A 85 1 13 HELIX 4 AA4 GLY A 90 ASP A 93 5 4 HELIX 5 AA5 THR A 99 VAL A 103 5 5 HELIX 6 AA6 ILE A 109 HIS A 113 5 5 HELIX 7 AA7 VAL A 120 TYR A 130 1 11 HELIX 8 AA8 ASP A 132 GLY A 144 1 13 HELIX 9 AA9 GLY A 145 LEU A 156 1 12 HELIX 10 AB1 VAL A 168 ILE A 172 5 5 HELIX 11 AB2 THR A 181 LEU A 194 1 14 HELIX 12 AB3 ASP A 199 ARG A 212 1 14 HELIX 13 AB4 SER A 219 VAL A 224 5 6 HELIX 14 AB5 LYS A 271 PHE A 287 1 17 HELIX 15 AB6 ALA B 31 GLY B 43 1 13 HELIX 16 AB7 CYS B 70 THR B 72 5 3 HELIX 17 AB8 VAL B 73 LEU B 86 1 14 HELIX 18 AB9 GLY B 90 ASP B 93 5 4 HELIX 19 AC1 THR B 99 VAL B 103 5 5 HELIX 20 AC2 ILE B 109 HIS B 113 5 5 HELIX 21 AC3 VAL B 120 TYR B 130 1 11 HELIX 22 AC4 ASP B 132 GLY B 144 1 13 HELIX 23 AC5 GLY B 145 LEU B 156 1 12 HELIX 24 AC6 VAL B 168 ILE B 172 5 5 HELIX 25 AC7 THR B 181 LEU B 194 1 14 HELIX 26 AC8 ASP B 199 ARG B 212 1 14 HELIX 27 AC9 SER B 219 VAL B 224 5 6 HELIX 28 AD1 LYS B 271 PHE B 287 1 17 SHEET 1 AA1 5 THR A 58 HIS A 61 0 SHEET 2 AA1 5 GLY A 44 ASP A 52 -1 N VAL A 48 O HIS A 61 SHEET 3 AA1 5 ILE A 256 PRO A 264 -1 O LEU A 261 N GLY A 47 SHEET 4 AA1 5 THR A 242 TRP A 249 -1 N ILE A 248 O ILE A 256 SHEET 5 AA1 5 THR A 229 GLY A 236 -1 N GLY A 235 O ASN A 243 SHEET 1 AA2 2 PHE A 67 LEU A 68 0 SHEET 2 AA2 2 THR A 179 SER A 180 -1 O SER A 180 N PHE A 67 SHEET 1 AA3 2 ARG A 95 ILE A 96 0 SHEET 2 AA3 2 MET A 118 THR A 119 -1 O MET A 118 N ILE A 96 SHEET 1 AA4 5 THR B 58 HIS B 61 0 SHEET 2 AA4 5 GLY B 44 ASP B 52 -1 N VAL B 48 O HIS B 61 SHEET 3 AA4 5 ILE B 256 PRO B 264 -1 O LEU B 261 N GLY B 47 SHEET 4 AA4 5 THR B 242 TRP B 249 -1 N ILE B 248 O ILE B 256 SHEET 5 AA4 5 THR B 229 GLY B 236 -1 N GLY B 235 O ASN B 243 SHEET 1 AA5 2 PHE B 67 LEU B 68 0 SHEET 2 AA5 2 THR B 179 SER B 180 -1 O SER B 180 N PHE B 67 SHEET 1 AA6 2 ARG B 95 ILE B 96 0 SHEET 2 AA6 2 MET B 118 THR B 119 -1 O MET B 118 N ILE B 96 CISPEP 1 GLU A 167 VAL A 168 0 -1.52 CISPEP 2 GLU B 167 VAL B 168 0 2.64 SITE 1 AC1 9 SER A 71 SER A 131 THR A 215 LYS A 233 SITE 2 AC1 9 THR A 234 GLY A 235 GLY A 236 HOH A 560 SITE 3 AC1 9 HOH A 639 SITE 1 AC2 6 GLU A 65 ARG A 66 GLY A 227 TRP A 228 SITE 2 AC2 6 THR A 229 TRP A 249 SITE 1 AC3 7 SER B 71 SER B 131 THR B 215 THR B 234 SITE 2 AC3 7 GLY B 235 GLY B 236 HOH B 523 SITE 1 AC4 6 ASP A 102 THR A 141 GLN B 112 HOH B 407 SITE 2 AC4 6 HOH B 423 HOH B 444 CRYST1 36.490 65.210 107.420 90.00 90.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027405 0.000000 0.000450 0.00000 SCALE2 0.000000 0.015335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009311 0.00000