data_4YGI # _entry.id 4YGI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YGI pdb_00004ygi 10.2210/pdb4ygi/pdb WWPDB D_1000207324 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '3Q0B contains the same SUVH5 SRA complexed with fully methylated CG DNA in space group P42212.' 3Q0B unspecified PDB '3Q0C contains the same SUVH5 SRA complexed with fully methylated CG DNA in space group P6122.' 3Q0C unspecified PDB '3Q0D contains the same SUVH5 SRA complexed with hemi methylated CG DNA.' 3Q0D unspecified PDB '3Q0F contains the same SUVH5 SRA complexed with methylated CHH DNA.' 3Q0F unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YGI _pdbx_database_status.recvd_initial_deposition_date 2015-02-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Rajakumara, E.' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 20161 _citation.page_last 20161 _citation.title 'Mechanistic insights into the recognition of 5-methylcytosine oxidation derivatives by the SUVH5 SRA domain' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/srep20161 _citation.pdbx_database_id_PubMed 26841909 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rajakumara, E.' 1 ? primary 'Nakarakanti, N.K.' 2 ? primary 'Nivya, M.A.' 3 ? primary 'Satish, M.' 4 ? # _cell.length_a 76.980 _cell.length_b 76.980 _cell.length_c 72.111 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4YGI _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.entry_id 4YGI _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5' 18515.920 1 2.1.1.43 ? 'SUVH5 SRA DOMAIN, UNP residues 362-528' ? 2 polymer syn Polydeoxyribonucleotide 3378.235 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 water nat water 18.015 16 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Histone H3-K9 methyltransferase 5,H3-K9-HMTase 5,Protein SET DOMAIN GROUP 9,Suppressor of variegation 3-9 homolog protein 5,Su(var)3-9 homolog protein 5 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNN EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPE LPWKEVA ; ;QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNN EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPE LPWKEVA ; A ? 2 polydeoxyribonucleotide no yes '(DA)(DC)(DT)(DA)(5HC)(DG)(DT)(DA)(DG)(DT)(DT)' ACTAXGTAGTT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ILE n 1 3 ILE n 1 4 GLY n 1 5 THR n 1 6 VAL n 1 7 PRO n 1 8 GLY n 1 9 VAL n 1 10 GLU n 1 11 VAL n 1 12 GLY n 1 13 ASP n 1 14 GLU n 1 15 PHE n 1 16 GLN n 1 17 TYR n 1 18 ARG n 1 19 MET n 1 20 GLU n 1 21 LEU n 1 22 ASN n 1 23 LEU n 1 24 LEU n 1 25 GLY n 1 26 ILE n 1 27 HIS n 1 28 ARG n 1 29 PRO n 1 30 SER n 1 31 GLN n 1 32 SER n 1 33 GLY n 1 34 ILE n 1 35 ASP n 1 36 TYR n 1 37 MET n 1 38 LYS n 1 39 ASP n 1 40 ASP n 1 41 GLY n 1 42 GLY n 1 43 GLU n 1 44 LEU n 1 45 VAL n 1 46 ALA n 1 47 THR n 1 48 SER n 1 49 ILE n 1 50 VAL n 1 51 SER n 1 52 SER n 1 53 GLY n 1 54 GLY n 1 55 TYR n 1 56 ASN n 1 57 ASP n 1 58 VAL n 1 59 LEU n 1 60 ASP n 1 61 ASN n 1 62 SER n 1 63 ASP n 1 64 VAL n 1 65 LEU n 1 66 ILE n 1 67 TYR n 1 68 THR n 1 69 GLY n 1 70 GLN n 1 71 GLY n 1 72 GLY n 1 73 ASN n 1 74 VAL n 1 75 GLY n 1 76 LYS n 1 77 LYS n 1 78 LYS n 1 79 ASN n 1 80 ASN n 1 81 GLU n 1 82 PRO n 1 83 PRO n 1 84 LYS n 1 85 ASP n 1 86 GLN n 1 87 GLN n 1 88 LEU n 1 89 VAL n 1 90 THR n 1 91 GLY n 1 92 ASN n 1 93 LEU n 1 94 ALA n 1 95 LEU n 1 96 LYS n 1 97 ASN n 1 98 SER n 1 99 ILE n 1 100 ASN n 1 101 LYS n 1 102 LYS n 1 103 ASN n 1 104 PRO n 1 105 VAL n 1 106 ARG n 1 107 VAL n 1 108 ILE n 1 109 ARG n 1 110 GLY n 1 111 ILE n 1 112 LYS n 1 113 ASN n 1 114 THR n 1 115 THR n 1 116 LEU n 1 117 GLN n 1 118 SER n 1 119 SER n 1 120 VAL n 1 121 VAL n 1 122 ALA n 1 123 LYS n 1 124 ASN n 1 125 TYR n 1 126 VAL n 1 127 TYR n 1 128 ASP n 1 129 GLY n 1 130 LEU n 1 131 TYR n 1 132 LEU n 1 133 VAL n 1 134 GLU n 1 135 GLU n 1 136 TYR n 1 137 TRP n 1 138 GLU n 1 139 GLU n 1 140 THR n 1 141 GLY n 1 142 SER n 1 143 HIS n 1 144 GLY n 1 145 LYS n 1 146 LEU n 1 147 VAL n 1 148 PHE n 1 149 LYS n 1 150 PHE n 1 151 LYS n 1 152 LEU n 1 153 ARG n 1 154 ARG n 1 155 ILE n 1 156 PRO n 1 157 GLY n 1 158 GLN n 1 159 PRO n 1 160 GLU n 1 161 LEU n 1 162 PRO n 1 163 TRP n 1 164 LYS n 1 165 GLU n 1 166 VAL n 1 167 ALA n 2 1 DA n 2 2 DC n 2 3 DT n 2 4 DA n 2 5 5HC n 2 6 DG n 2 7 DT n 2 8 DA n 2 9 DG n 2 10 DT n 2 11 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 167 _entity_src_gen.gene_src_common_name 'Mouse-ear cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SUVH5, SDG9, SET9, At2g35160, T4C15.17' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta2 DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PETSUMO _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'CHEMICALLY SYNTHESIZED' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SUVH5_ARATH O82175 ? 1 ;QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNN EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPE LPWKEVA ; 362 2 PDB 4YGI 4YGI ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YGI A 1 ? 167 ? O82175 362 ? 528 ? 362 528 2 2 4YGI B 1 ? 11 ? 4YGI 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5HC 'DNA linking' n ;2'-deoxy-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate) ; ? 'C10 H16 N3 O8 P' 337.223 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YGI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2M Sodium chloride, 0.1M BIS-TRIS pH 6.5, 25%(w/v) Polyethylene glycol 3,350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-11-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0718 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0718 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_synchrotron_site NSLS # _reflns.B_iso_Wilson_estimate 70.400 _reflns.entry_id 4YGI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.600 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7060 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.600 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 35.506 _reflns.pdbx_netI_over_sigmaI 21.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 2.579 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 32545 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.600 2.690 ? 2.4 ? ? ? 682 ? 99.100 ? ? ? ? 0.75 ? ? ? ? ? ? ? ? 4.700 ? 1.931 ? ? ? ? 0 1 1 ? ? 2.690 2.800 ? ? ? ? ? 680 ? 99.000 ? ? ? ? 0.572 ? ? ? ? ? ? ? ? 4.800 ? 1.724 ? ? ? ? 0 2 1 ? ? 2.800 2.930 ? ? ? ? ? 701 ? 99.900 ? ? ? ? 0.387 ? ? ? ? ? ? ? ? 4.800 ? 1.761 ? ? ? ? 0 3 1 ? ? 2.930 3.080 ? ? ? ? ? 695 ? 99.900 ? ? ? ? 0.260 ? ? ? ? ? ? ? ? 4.800 ? 1.907 ? ? ? ? 0 4 1 ? ? 3.080 3.280 ? ? ? ? ? 700 ? 99.600 ? ? ? ? 0.132 ? ? ? ? ? ? ? ? 4.800 ? 2.304 ? ? ? ? 0 5 1 ? ? 3.280 3.530 ? ? ? ? ? 700 ? 99.300 ? ? ? ? 0.085 ? ? ? ? ? ? ? ? 4.600 ? 2.893 ? ? ? ? 0 6 1 ? ? 3.530 3.880 ? ? ? ? ? 700 ? 99.300 ? ? ? ? 0.066 ? ? ? ? ? ? ? ? 4.600 ? 3.139 ? ? ? ? 0 7 1 ? ? 3.880 4.450 ? ? ? ? ? 707 ? 99.000 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 4.500 ? 3.561 ? ? ? ? 0 8 1 ? ? 4.450 5.600 ? ? ? ? ? 726 ? 98.100 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 4.300 ? 3.848 ? ? ? ? 0 9 1 ? ? 5.600 50.000 ? ? ? ? ? 769 ? 95.800 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 4.100 ? 2.957 ? ? ? ? 0 10 1 ? ? # _refine.entry_id 4YGI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.600 _refine.ls_d_res_low 33.9560 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.9700 _refine.ls_number_reflns_obs 7039 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2367 _refine.ls_R_factor_R_work 0.2345 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2826 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7000 _refine.ls_number_reflns_R_free 331 _refine.ls_number_reflns_R_work 6708 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 68.3830 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.4100 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3Q0B _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 106.930 _refine.B_iso_min 44.570 _refine.pdbx_overall_phase_error 35.3200 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 33.9560 _refine_hist.pdbx_number_atoms_ligand 207 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 1560 _refine_hist.pdbx_number_residues_total 150 _refine_hist.pdbx_B_iso_mean_ligand 63.99 _refine_hist.pdbx_B_iso_mean_solvent 68.10 _refine_hist.pdbx_number_atoms_protein 1133 _refine_hist.pdbx_number_atoms_nucleic_acid 204 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1381 0.003 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1910 0.607 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 211 0.024 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 215 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 515 17.280 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 2.5956 3.2698 2 99.0000 3278 . 0.2979 0.3905 . 172 . 3450 . 'X-RAY DIFFRACTION' . 3.2698 33.9586 2 98.0000 3430 . 0.2188 0.2544 . 159 . 3589 . 'X-RAY DIFFRACTION' . # _struct.entry_id 4YGI _struct.title 'Crystal Structure of SUVH5 SRA bound to fully hydroxymethylated CG DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YGI _struct_keywords.text 'SUVH5 SRA, Fully hydroxymethylated CG, 5-hydroxymethylcytosine, 5hmC binding protein., TRANSFERASE-DNA complex' _struct_keywords.pdbx_keywords TRANSFERASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 17 ? LEU A 24 ? TYR A 378 LEU A 385 1 ? 8 HELX_P HELX_P2 AA2 VAL A 89 ? LYS A 102 ? VAL A 450 LYS A 463 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DA 4 "O3'" ? ? ? 1_555 B 5HC 5 P ? ? B DA 4 B 5HC 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? B 5HC 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B 5HC 5 B DG 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 B DT 10 N3 ? ? B DA 1 B DT 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 B DT 10 O4 ? ? B DA 1 B DT 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? B DC 2 B DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? B DC 2 B DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? B DC 2 B DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 3 B DA 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 3 B DA 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 4 B DT 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 4 B DT 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? B DT 7 B DA 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? B DT 7 B DA 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 8 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 8 B DT 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 8 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 8 B DT 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 9 B DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 9 B DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 9 B DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 10 N3 ? ? ? 1_555 B DA 1 N1 ? ? B DT 10 B DA 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 10 O4 ? ? ? 1_555 B DA 1 N6 ? ? B DT 10 B DA 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 14 ? PHE A 15 ? GLU A 375 PHE A 376 AA1 2 TYR A 125 ? THR A 140 ? TYR A 486 THR A 501 AA1 3 VAL A 105 ? GLY A 110 ? VAL A 466 GLY A 471 AA1 4 LEU A 44 ? SER A 51 ? LEU A 405 SER A 412 AA1 5 ILE A 34 ? LYS A 38 ? ILE A 395 LYS A 399 AA2 1 GLU A 14 ? PHE A 15 ? GLU A 375 PHE A 376 AA2 2 TYR A 125 ? THR A 140 ? TYR A 486 THR A 501 AA2 3 LEU A 146 ? ARG A 154 ? LEU A 507 ARG A 515 AA2 4 VAL A 64 ? THR A 68 ? VAL A 425 THR A 429 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 15 ? N PHE A 376 O TYR A 125 ? O TYR A 486 AA1 2 3 O TYR A 131 ? O TYR A 492 N VAL A 105 ? N VAL A 466 AA1 3 4 O ARG A 106 ? O ARG A 467 N ILE A 49 ? N ILE A 410 AA1 4 5 O VAL A 45 ? O VAL A 406 N MET A 37 ? N MET A 398 AA2 1 2 N PHE A 15 ? N PHE A 376 O TYR A 125 ? O TYR A 486 AA2 2 3 N GLU A 139 ? N GLU A 500 O VAL A 147 ? O VAL A 508 AA2 3 4 O PHE A 150 ? O PHE A 511 N TYR A 67 ? N TYR A 428 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 601 ? 3 'binding site for residue MG A 601' AC2 Software B MG 101 ? 1 'binding site for residue MG B 101' AC3 Software B MG 102 ? 1 'binding site for residue MG B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASP A 60 ? ASP A 421 . ? 2_565 ? 2 AC1 3 VAL A 64 ? VAL A 425 . ? 2_565 ? 3 AC1 3 GLU A 139 ? GLU A 500 . ? 1_555 ? 4 AC2 1 DT B 10 ? DT B 10 . ? 1_555 ? 5 AC3 1 DG B 9 ? DG B 9 . ? 1_555 ? # _atom_sites.entry_id 4YGI _atom_sites.fract_transf_matrix[1][1] 0.012990 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012990 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013868 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 362 362 GLN GLN A . n A 1 2 ILE 2 363 363 ILE ILE A . n A 1 3 ILE 3 364 364 ILE ILE A . n A 1 4 GLY 4 365 365 GLY GLY A . n A 1 5 THR 5 366 366 THR THR A . n A 1 6 VAL 6 367 367 VAL VAL A . n A 1 7 PRO 7 368 368 PRO PRO A . n A 1 8 GLY 8 369 369 GLY GLY A . n A 1 9 VAL 9 370 370 VAL VAL A . n A 1 10 GLU 10 371 371 GLU GLU A . n A 1 11 VAL 11 372 372 VAL VAL A . n A 1 12 GLY 12 373 373 GLY GLY A . n A 1 13 ASP 13 374 374 ASP ASP A . n A 1 14 GLU 14 375 375 GLU GLU A . n A 1 15 PHE 15 376 376 PHE PHE A . n A 1 16 GLN 16 377 377 GLN GLN A . n A 1 17 TYR 17 378 378 TYR TYR A . n A 1 18 ARG 18 379 379 ARG ARG A . n A 1 19 MET 19 380 380 MET MET A . n A 1 20 GLU 20 381 381 GLU GLU A . n A 1 21 LEU 21 382 382 LEU LEU A . n A 1 22 ASN 22 383 383 ASN ASN A . n A 1 23 LEU 23 384 384 LEU LEU A . n A 1 24 LEU 24 385 385 LEU LEU A . n A 1 25 GLY 25 386 386 GLY GLY A . n A 1 26 ILE 26 387 387 ILE ILE A . n A 1 27 HIS 27 388 388 HIS HIS A . n A 1 28 ARG 28 389 389 ARG ARG A . n A 1 29 PRO 29 390 390 PRO PRO A . n A 1 30 SER 30 391 391 SER SER A . n A 1 31 GLN 31 392 392 GLN GLN A . n A 1 32 SER 32 393 393 SER SER A . n A 1 33 GLY 33 394 394 GLY GLY A . n A 1 34 ILE 34 395 395 ILE ILE A . n A 1 35 ASP 35 396 396 ASP ASP A . n A 1 36 TYR 36 397 397 TYR TYR A . n A 1 37 MET 37 398 398 MET MET A . n A 1 38 LYS 38 399 399 LYS LYS A . n A 1 39 ASP 39 400 400 ASP ASP A . n A 1 40 ASP 40 401 401 ASP GLY A . n A 1 41 GLY 41 402 402 GLY GLY A . n A 1 42 GLY 42 403 403 GLY GLY A . n A 1 43 GLU 43 404 404 GLU GLU A . n A 1 44 LEU 44 405 405 LEU LEU A . n A 1 45 VAL 45 406 406 VAL VAL A . n A 1 46 ALA 46 407 407 ALA ALA A . n A 1 47 THR 47 408 408 THR THR A . n A 1 48 SER 48 409 409 SER SER A . n A 1 49 ILE 49 410 410 ILE ILE A . n A 1 50 VAL 50 411 411 VAL VAL A . n A 1 51 SER 51 412 412 SER SER A . n A 1 52 SER 52 413 413 SER SER A . n A 1 53 GLY 53 414 414 GLY GLY A . n A 1 54 GLY 54 415 415 GLY GLY A . n A 1 55 TYR 55 416 416 TYR TYR A . n A 1 56 ASN 56 417 417 ASN ASN A . n A 1 57 ASP 57 418 418 ASP ASP A . n A 1 58 VAL 58 419 419 VAL VAL A . n A 1 59 LEU 59 420 420 LEU LEU A . n A 1 60 ASP 60 421 421 ASP ASP A . n A 1 61 ASN 61 422 422 ASN ASN A . n A 1 62 SER 62 423 423 SER SER A . n A 1 63 ASP 63 424 424 ASP ASP A . n A 1 64 VAL 64 425 425 VAL VAL A . n A 1 65 LEU 65 426 426 LEU LEU A . n A 1 66 ILE 66 427 427 ILE ILE A . n A 1 67 TYR 67 428 428 TYR TYR A . n A 1 68 THR 68 429 429 THR THR A . n A 1 69 GLY 69 430 430 GLY GLY A . n A 1 70 GLN 70 431 431 GLN GLN A . n A 1 71 GLY 71 432 432 GLY GLY A . n A 1 72 GLY 72 433 433 GLY GLY A . n A 1 73 ASN 73 434 434 ASN ASN A . n A 1 74 VAL 74 435 435 VAL VAL A . n A 1 75 GLY 75 436 436 GLY GLY A . n A 1 76 LYS 76 437 437 LYS LYS A . n A 1 77 LYS 77 438 438 LYS LYS A . n A 1 78 LYS 78 439 ? ? ? A . n A 1 79 ASN 79 440 ? ? ? A . n A 1 80 ASN 80 441 ? ? ? A . n A 1 81 GLU 81 442 442 GLU ALA A . n A 1 82 PRO 82 443 443 PRO PRO A . n A 1 83 PRO 83 444 444 PRO PRO A . n A 1 84 LYS 84 445 445 LYS LYS A . n A 1 85 ASP 85 446 446 ASP ASP A . n A 1 86 GLN 86 447 447 GLN GLN A . n A 1 87 GLN 87 448 448 GLN GLN A . n A 1 88 LEU 88 449 449 LEU LEU A . n A 1 89 VAL 89 450 450 VAL VAL A . n A 1 90 THR 90 451 451 THR THR A . n A 1 91 GLY 91 452 452 GLY GLY A . n A 1 92 ASN 92 453 453 ASN ASN A . n A 1 93 LEU 93 454 454 LEU LEU A . n A 1 94 ALA 94 455 455 ALA ALA A . n A 1 95 LEU 95 456 456 LEU LEU A . n A 1 96 LYS 96 457 457 LYS LYS A . n A 1 97 ASN 97 458 458 ASN ASN A . n A 1 98 SER 98 459 459 SER SER A . n A 1 99 ILE 99 460 460 ILE ILE A . n A 1 100 ASN 100 461 461 ASN ASN A . n A 1 101 LYS 101 462 462 LYS LYS A . n A 1 102 LYS 102 463 463 LYS LYS A . n A 1 103 ASN 103 464 464 ASN ASN A . n A 1 104 PRO 104 465 465 PRO PRO A . n A 1 105 VAL 105 466 466 VAL VAL A . n A 1 106 ARG 106 467 467 ARG ARG A . n A 1 107 VAL 107 468 468 VAL VAL A . n A 1 108 ILE 108 469 469 ILE ILE A . n A 1 109 ARG 109 470 470 ARG ARG A . n A 1 110 GLY 110 471 471 GLY GLY A . n A 1 111 ILE 111 472 472 ILE ILE A . n A 1 112 LYS 112 473 473 LYS LYS A . n A 1 113 ASN 113 474 ? ? ? A . n A 1 114 THR 114 475 ? ? ? A . n A 1 115 THR 115 476 ? ? ? A . n A 1 116 LEU 116 477 ? ? ? A . n A 1 117 GLN 117 478 ? ? ? A . n A 1 118 SER 118 479 ? ? ? A . n A 1 119 SER 119 480 ? ? ? A . n A 1 120 VAL 120 481 ? ? ? A . n A 1 121 VAL 121 482 ? ? ? A . n A 1 122 ALA 122 483 ? ? ? A . n A 1 123 LYS 123 484 484 LYS LYS A . n A 1 124 ASN 124 485 485 ASN ASN A . n A 1 125 TYR 125 486 486 TYR TYR A . n A 1 126 VAL 126 487 487 VAL VAL A . n A 1 127 TYR 127 488 488 TYR TYR A . n A 1 128 ASP 128 489 489 ASP ASP A . n A 1 129 GLY 129 490 490 GLY GLY A . n A 1 130 LEU 130 491 491 LEU LEU A . n A 1 131 TYR 131 492 492 TYR TYR A . n A 1 132 LEU 132 493 493 LEU LEU A . n A 1 133 VAL 133 494 494 VAL VAL A . n A 1 134 GLU 134 495 495 GLU GLU A . n A 1 135 GLU 135 496 496 GLU GLU A . n A 1 136 TYR 136 497 497 TYR TYR A . n A 1 137 TRP 137 498 498 TRP TRP A . n A 1 138 GLU 138 499 499 GLU GLU A . n A 1 139 GLU 139 500 500 GLU GLU A . n A 1 140 THR 140 501 501 THR THR A . n A 1 141 GLY 141 502 502 GLY GLY A . n A 1 142 SER 142 503 503 SER GLY A . n A 1 143 HIS 143 504 504 HIS HIS A . n A 1 144 GLY 144 505 505 GLY GLY A . n A 1 145 LYS 145 506 506 LYS LYS A . n A 1 146 LEU 146 507 507 LEU LEU A . n A 1 147 VAL 147 508 508 VAL VAL A . n A 1 148 PHE 148 509 509 PHE PHE A . n A 1 149 LYS 149 510 510 LYS LYS A . n A 1 150 PHE 150 511 511 PHE PHE A . n A 1 151 LYS 151 512 512 LYS LYS A . n A 1 152 LEU 152 513 513 LEU LEU A . n A 1 153 ARG 153 514 514 ARG ARG A . n A 1 154 ARG 154 515 515 ARG ARG A . n A 1 155 ILE 155 516 516 ILE ILE A . n A 1 156 PRO 156 517 517 PRO PRO A . n A 1 157 GLY 157 518 518 GLY GLY A . n A 1 158 GLN 158 519 519 GLN GLN A . n A 1 159 PRO 159 520 520 PRO PRO A . n A 1 160 GLU 160 521 521 GLU GLU A . n A 1 161 LEU 161 522 522 LEU LEU A . n A 1 162 PRO 162 523 523 PRO PRO A . n A 1 163 TRP 163 524 524 TRP ALA A . n A 1 164 LYS 164 525 ? ? ? A . n A 1 165 GLU 165 526 ? ? ? A . n A 1 166 VAL 166 527 ? ? ? A . n A 1 167 ALA 167 528 ? ? ? A . n B 2 1 DA 1 1 1 DA Ad B . n B 2 2 DC 2 2 2 DC Cd B . n B 2 3 DT 3 3 3 DT Td B . n B 2 4 DA 4 4 4 DA Ad B . n B 2 5 5HC 5 5 5 5HC HMC B . n B 2 6 DG 6 6 6 DG Gd B . n B 2 7 DT 7 7 7 DT Td B . n B 2 8 DA 8 8 8 DA Ad B . n B 2 9 DG 9 9 9 DG Gd B . n B 2 10 DT 10 10 10 DT Td B . n B 2 11 DT 11 11 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 601 3 MG MG A . D 3 MG 1 101 1 MG MG B . E 3 MG 1 102 2 MG MG B . F 4 HOH 1 701 15 HOH HOH A . F 4 HOH 2 702 3 HOH HOH A . F 4 HOH 3 703 2 HOH HOH A . F 4 HOH 4 704 4 HOH HOH A . F 4 HOH 5 705 7 HOH HOH A . F 4 HOH 6 706 10 HOH HOH A . F 4 HOH 7 707 6 HOH HOH A . F 4 HOH 8 708 8 HOH HOH A . F 4 HOH 9 709 5 HOH HOH A . F 4 HOH 10 710 13 HOH HOH A . F 4 HOH 11 711 14 HOH HOH A . G 4 HOH 1 201 12 HOH HOH B . G 4 HOH 2 202 1 HOH HOH B . G 4 HOH 3 203 9 HOH HOH B . G 4 HOH 4 204 16 HOH HOH B . G 4 HOH 5 205 11 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5010 ? 1 MORE -41 ? 1 'SSA (A^2)' 16480 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-02-17 2 'Structure model' 1 1 2016-03-02 3 'Structure model' 1 2 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 416 ? ? -124.09 -146.71 2 1 ASN A 434 ? ? 55.94 74.87 3 1 LYS A 437 ? ? -96.45 30.86 4 1 THR A 451 ? ? 53.22 -123.49 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 711 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.58 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 399 ? CG ? A LYS 38 CG 2 1 Y 1 A LYS 399 ? CD ? A LYS 38 CD 3 1 Y 1 A LYS 399 ? CE ? A LYS 38 CE 4 1 Y 1 A LYS 399 ? NZ ? A LYS 38 NZ 5 1 Y 1 A ASP 401 ? CB ? A ASP 40 CB 6 1 Y 1 A ASP 401 ? CG ? A ASP 40 CG 7 1 Y 1 A ASP 401 ? OD1 ? A ASP 40 OD1 8 1 Y 1 A ASP 401 ? OD2 ? A ASP 40 OD2 9 1 Y 1 A GLU 404 ? CG ? A GLU 43 CG 10 1 Y 1 A GLU 404 ? CD ? A GLU 43 CD 11 1 Y 1 A GLU 404 ? OE1 ? A GLU 43 OE1 12 1 Y 1 A GLU 404 ? OE2 ? A GLU 43 OE2 13 1 Y 1 A ASN 417 ? CG ? A ASN 56 CG 14 1 Y 1 A ASN 417 ? OD1 ? A ASN 56 OD1 15 1 Y 1 A ASN 417 ? ND2 ? A ASN 56 ND2 16 1 Y 1 A LYS 437 ? CG ? A LYS 76 CG 17 1 Y 1 A LYS 437 ? CD ? A LYS 76 CD 18 1 Y 1 A LYS 437 ? CE ? A LYS 76 CE 19 1 Y 1 A LYS 437 ? NZ ? A LYS 76 NZ 20 1 Y 1 A LYS 438 ? CG ? A LYS 77 CG 21 1 Y 1 A LYS 438 ? CD ? A LYS 77 CD 22 1 Y 1 A LYS 438 ? CE ? A LYS 77 CE 23 1 Y 1 A LYS 438 ? NZ ? A LYS 77 NZ 24 1 Y 1 A GLU 442 ? CG ? A GLU 81 CG 25 1 Y 1 A GLU 442 ? CD ? A GLU 81 CD 26 1 Y 1 A GLU 442 ? OE1 ? A GLU 81 OE1 27 1 Y 1 A GLU 442 ? OE2 ? A GLU 81 OE2 28 1 Y 1 A LYS 473 ? CG ? A LYS 112 CG 29 1 Y 1 A LYS 473 ? CD ? A LYS 112 CD 30 1 Y 1 A LYS 473 ? CE ? A LYS 112 CE 31 1 Y 1 A LYS 473 ? NZ ? A LYS 112 NZ 32 1 Y 1 A SER 503 ? CB ? A SER 142 CB 33 1 Y 1 A SER 503 ? OG ? A SER 142 OG 34 1 Y 1 A GLU 521 ? CG ? A GLU 160 CG 35 1 Y 1 A GLU 521 ? CD ? A GLU 160 CD 36 1 Y 1 A GLU 521 ? OE1 ? A GLU 160 OE1 37 1 Y 1 A GLU 521 ? OE2 ? A GLU 160 OE2 38 1 Y 1 A TRP 524 ? CG ? A TRP 163 CG 39 1 Y 1 A TRP 524 ? CD1 ? A TRP 163 CD1 40 1 Y 1 A TRP 524 ? CD2 ? A TRP 163 CD2 41 1 Y 1 A TRP 524 ? NE1 ? A TRP 163 NE1 42 1 Y 1 A TRP 524 ? CE2 ? A TRP 163 CE2 43 1 Y 1 A TRP 524 ? CE3 ? A TRP 163 CE3 44 1 Y 1 A TRP 524 ? CZ2 ? A TRP 163 CZ2 45 1 Y 1 A TRP 524 ? CZ3 ? A TRP 163 CZ3 46 1 Y 1 A TRP 524 ? CH2 ? A TRP 163 CH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 439 ? A LYS 78 2 1 Y 1 A ASN 440 ? A ASN 79 3 1 Y 1 A ASN 441 ? A ASN 80 4 1 Y 1 A ASN 474 ? A ASN 113 5 1 Y 1 A THR 475 ? A THR 114 6 1 Y 1 A THR 476 ? A THR 115 7 1 Y 1 A LEU 477 ? A LEU 116 8 1 Y 1 A GLN 478 ? A GLN 117 9 1 Y 1 A SER 479 ? A SER 118 10 1 Y 1 A SER 480 ? A SER 119 11 1 Y 1 A VAL 481 ? A VAL 120 12 1 Y 1 A VAL 482 ? A VAL 121 13 1 Y 1 A ALA 483 ? A ALA 122 14 1 Y 1 A LYS 525 ? A LYS 164 15 1 Y 1 A GLU 526 ? A GLU 165 16 1 Y 1 A VAL 527 ? A VAL 166 17 1 Y 1 A ALA 528 ? A ALA 167 18 1 Y 1 B DT 11 ? B DT 11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5HC P P N N 1 5HC OP1 O N N 2 5HC OP2 O N N 3 5HC "O5'" O N N 4 5HC "C5'" C N N 5 5HC "C4'" C N R 6 5HC "O4'" O N N 7 5HC "C3'" C N S 8 5HC "O3'" O N N 9 5HC "C2'" C N N 10 5HC "C1'" C N R 11 5HC N1 N N N 12 5HC C2 C N N 13 5HC O2 O N N 14 5HC N3 N N N 15 5HC C4 C N N 16 5HC N4 N N N 17 5HC C5 C N N 18 5HC C5M C N N 19 5HC O5 O N N 20 5HC C6 C N N 21 5HC OP3 O N N 22 5HC HOP2 H N N 23 5HC "H5'" H N N 24 5HC "H5''" H N N 25 5HC H4 H N N 26 5HC "H3'" H N N 27 5HC "HO3'" H N N 28 5HC "H2'" H N N 29 5HC "H2''" H N N 30 5HC "H1'" H N N 31 5HC HN41 H N N 32 5HC HN42 H N N 33 5HC H5M2 H N N 34 5HC H5M1 H N N 35 5HC HO5 H N N 36 5HC H6 H N N 37 5HC HOP3 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 DA OP3 O N N 112 DA P P N N 113 DA OP1 O N N 114 DA OP2 O N N 115 DA "O5'" O N N 116 DA "C5'" C N N 117 DA "C4'" C N R 118 DA "O4'" O N N 119 DA "C3'" C N S 120 DA "O3'" O N N 121 DA "C2'" C N N 122 DA "C1'" C N R 123 DA N9 N Y N 124 DA C8 C Y N 125 DA N7 N Y N 126 DA C5 C Y N 127 DA C6 C Y N 128 DA N6 N N N 129 DA N1 N Y N 130 DA C2 C Y N 131 DA N3 N Y N 132 DA C4 C Y N 133 DA HOP3 H N N 134 DA HOP2 H N N 135 DA "H5'" H N N 136 DA "H5''" H N N 137 DA "H4'" H N N 138 DA "H3'" H N N 139 DA "HO3'" H N N 140 DA "H2'" H N N 141 DA "H2''" H N N 142 DA "H1'" H N N 143 DA H8 H N N 144 DA H61 H N N 145 DA H62 H N N 146 DA H2 H N N 147 DC OP3 O N N 148 DC P P N N 149 DC OP1 O N N 150 DC OP2 O N N 151 DC "O5'" O N N 152 DC "C5'" C N N 153 DC "C4'" C N R 154 DC "O4'" O N N 155 DC "C3'" C N S 156 DC "O3'" O N N 157 DC "C2'" C N N 158 DC "C1'" C N R 159 DC N1 N N N 160 DC C2 C N N 161 DC O2 O N N 162 DC N3 N N N 163 DC C4 C N N 164 DC N4 N N N 165 DC C5 C N N 166 DC C6 C N N 167 DC HOP3 H N N 168 DC HOP2 H N N 169 DC "H5'" H N N 170 DC "H5''" H N N 171 DC "H4'" H N N 172 DC "H3'" H N N 173 DC "HO3'" H N N 174 DC "H2'" H N N 175 DC "H2''" H N N 176 DC "H1'" H N N 177 DC H41 H N N 178 DC H42 H N N 179 DC H5 H N N 180 DC H6 H N N 181 DG OP3 O N N 182 DG P P N N 183 DG OP1 O N N 184 DG OP2 O N N 185 DG "O5'" O N N 186 DG "C5'" C N N 187 DG "C4'" C N R 188 DG "O4'" O N N 189 DG "C3'" C N S 190 DG "O3'" O N N 191 DG "C2'" C N N 192 DG "C1'" C N R 193 DG N9 N Y N 194 DG C8 C Y N 195 DG N7 N Y N 196 DG C5 C Y N 197 DG C6 C N N 198 DG O6 O N N 199 DG N1 N N N 200 DG C2 C N N 201 DG N2 N N N 202 DG N3 N N N 203 DG C4 C Y N 204 DG HOP3 H N N 205 DG HOP2 H N N 206 DG "H5'" H N N 207 DG "H5''" H N N 208 DG "H4'" H N N 209 DG "H3'" H N N 210 DG "HO3'" H N N 211 DG "H2'" H N N 212 DG "H2''" H N N 213 DG "H1'" H N N 214 DG H8 H N N 215 DG H1 H N N 216 DG H21 H N N 217 DG H22 H N N 218 DT OP3 O N N 219 DT P P N N 220 DT OP1 O N N 221 DT OP2 O N N 222 DT "O5'" O N N 223 DT "C5'" C N N 224 DT "C4'" C N R 225 DT "O4'" O N N 226 DT "C3'" C N S 227 DT "O3'" O N N 228 DT "C2'" C N N 229 DT "C1'" C N R 230 DT N1 N N N 231 DT C2 C N N 232 DT O2 O N N 233 DT N3 N N N 234 DT C4 C N N 235 DT O4 O N N 236 DT C5 C N N 237 DT C7 C N N 238 DT C6 C N N 239 DT HOP3 H N N 240 DT HOP2 H N N 241 DT "H5'" H N N 242 DT "H5''" H N N 243 DT "H4'" H N N 244 DT "H3'" H N N 245 DT "HO3'" H N N 246 DT "H2'" H N N 247 DT "H2''" H N N 248 DT "H1'" H N N 249 DT H3 H N N 250 DT H71 H N N 251 DT H72 H N N 252 DT H73 H N N 253 DT H6 H N N 254 GLN N N N N 255 GLN CA C N S 256 GLN C C N N 257 GLN O O N N 258 GLN CB C N N 259 GLN CG C N N 260 GLN CD C N N 261 GLN OE1 O N N 262 GLN NE2 N N N 263 GLN OXT O N N 264 GLN H H N N 265 GLN H2 H N N 266 GLN HA H N N 267 GLN HB2 H N N 268 GLN HB3 H N N 269 GLN HG2 H N N 270 GLN HG3 H N N 271 GLN HE21 H N N 272 GLN HE22 H N N 273 GLN HXT H N N 274 GLU N N N N 275 GLU CA C N S 276 GLU C C N N 277 GLU O O N N 278 GLU CB C N N 279 GLU CG C N N 280 GLU CD C N N 281 GLU OE1 O N N 282 GLU OE2 O N N 283 GLU OXT O N N 284 GLU H H N N 285 GLU H2 H N N 286 GLU HA H N N 287 GLU HB2 H N N 288 GLU HB3 H N N 289 GLU HG2 H N N 290 GLU HG3 H N N 291 GLU HE2 H N N 292 GLU HXT H N N 293 GLY N N N N 294 GLY CA C N N 295 GLY C C N N 296 GLY O O N N 297 GLY OXT O N N 298 GLY H H N N 299 GLY H2 H N N 300 GLY HA2 H N N 301 GLY HA3 H N N 302 GLY HXT H N N 303 HIS N N N N 304 HIS CA C N S 305 HIS C C N N 306 HIS O O N N 307 HIS CB C N N 308 HIS CG C Y N 309 HIS ND1 N Y N 310 HIS CD2 C Y N 311 HIS CE1 C Y N 312 HIS NE2 N Y N 313 HIS OXT O N N 314 HIS H H N N 315 HIS H2 H N N 316 HIS HA H N N 317 HIS HB2 H N N 318 HIS HB3 H N N 319 HIS HD1 H N N 320 HIS HD2 H N N 321 HIS HE1 H N N 322 HIS HE2 H N N 323 HIS HXT H N N 324 HOH O O N N 325 HOH H1 H N N 326 HOH H2 H N N 327 ILE N N N N 328 ILE CA C N S 329 ILE C C N N 330 ILE O O N N 331 ILE CB C N S 332 ILE CG1 C N N 333 ILE CG2 C N N 334 ILE CD1 C N N 335 ILE OXT O N N 336 ILE H H N N 337 ILE H2 H N N 338 ILE HA H N N 339 ILE HB H N N 340 ILE HG12 H N N 341 ILE HG13 H N N 342 ILE HG21 H N N 343 ILE HG22 H N N 344 ILE HG23 H N N 345 ILE HD11 H N N 346 ILE HD12 H N N 347 ILE HD13 H N N 348 ILE HXT H N N 349 LEU N N N N 350 LEU CA C N S 351 LEU C C N N 352 LEU O O N N 353 LEU CB C N N 354 LEU CG C N N 355 LEU CD1 C N N 356 LEU CD2 C N N 357 LEU OXT O N N 358 LEU H H N N 359 LEU H2 H N N 360 LEU HA H N N 361 LEU HB2 H N N 362 LEU HB3 H N N 363 LEU HG H N N 364 LEU HD11 H N N 365 LEU HD12 H N N 366 LEU HD13 H N N 367 LEU HD21 H N N 368 LEU HD22 H N N 369 LEU HD23 H N N 370 LEU HXT H N N 371 LYS N N N N 372 LYS CA C N S 373 LYS C C N N 374 LYS O O N N 375 LYS CB C N N 376 LYS CG C N N 377 LYS CD C N N 378 LYS CE C N N 379 LYS NZ N N N 380 LYS OXT O N N 381 LYS H H N N 382 LYS H2 H N N 383 LYS HA H N N 384 LYS HB2 H N N 385 LYS HB3 H N N 386 LYS HG2 H N N 387 LYS HG3 H N N 388 LYS HD2 H N N 389 LYS HD3 H N N 390 LYS HE2 H N N 391 LYS HE3 H N N 392 LYS HZ1 H N N 393 LYS HZ2 H N N 394 LYS HZ3 H N N 395 LYS HXT H N N 396 MET N N N N 397 MET CA C N S 398 MET C C N N 399 MET O O N N 400 MET CB C N N 401 MET CG C N N 402 MET SD S N N 403 MET CE C N N 404 MET OXT O N N 405 MET H H N N 406 MET H2 H N N 407 MET HA H N N 408 MET HB2 H N N 409 MET HB3 H N N 410 MET HG2 H N N 411 MET HG3 H N N 412 MET HE1 H N N 413 MET HE2 H N N 414 MET HE3 H N N 415 MET HXT H N N 416 MG MG MG N N 417 PHE N N N N 418 PHE CA C N S 419 PHE C C N N 420 PHE O O N N 421 PHE CB C N N 422 PHE CG C Y N 423 PHE CD1 C Y N 424 PHE CD2 C Y N 425 PHE CE1 C Y N 426 PHE CE2 C Y N 427 PHE CZ C Y N 428 PHE OXT O N N 429 PHE H H N N 430 PHE H2 H N N 431 PHE HA H N N 432 PHE HB2 H N N 433 PHE HB3 H N N 434 PHE HD1 H N N 435 PHE HD2 H N N 436 PHE HE1 H N N 437 PHE HE2 H N N 438 PHE HZ H N N 439 PHE HXT H N N 440 PRO N N N N 441 PRO CA C N S 442 PRO C C N N 443 PRO O O N N 444 PRO CB C N N 445 PRO CG C N N 446 PRO CD C N N 447 PRO OXT O N N 448 PRO H H N N 449 PRO HA H N N 450 PRO HB2 H N N 451 PRO HB3 H N N 452 PRO HG2 H N N 453 PRO HG3 H N N 454 PRO HD2 H N N 455 PRO HD3 H N N 456 PRO HXT H N N 457 SER N N N N 458 SER CA C N S 459 SER C C N N 460 SER O O N N 461 SER CB C N N 462 SER OG O N N 463 SER OXT O N N 464 SER H H N N 465 SER H2 H N N 466 SER HA H N N 467 SER HB2 H N N 468 SER HB3 H N N 469 SER HG H N N 470 SER HXT H N N 471 THR N N N N 472 THR CA C N S 473 THR C C N N 474 THR O O N N 475 THR CB C N R 476 THR OG1 O N N 477 THR CG2 C N N 478 THR OXT O N N 479 THR H H N N 480 THR H2 H N N 481 THR HA H N N 482 THR HB H N N 483 THR HG1 H N N 484 THR HG21 H N N 485 THR HG22 H N N 486 THR HG23 H N N 487 THR HXT H N N 488 TRP N N N N 489 TRP CA C N S 490 TRP C C N N 491 TRP O O N N 492 TRP CB C N N 493 TRP CG C Y N 494 TRP CD1 C Y N 495 TRP CD2 C Y N 496 TRP NE1 N Y N 497 TRP CE2 C Y N 498 TRP CE3 C Y N 499 TRP CZ2 C Y N 500 TRP CZ3 C Y N 501 TRP CH2 C Y N 502 TRP OXT O N N 503 TRP H H N N 504 TRP H2 H N N 505 TRP HA H N N 506 TRP HB2 H N N 507 TRP HB3 H N N 508 TRP HD1 H N N 509 TRP HE1 H N N 510 TRP HE3 H N N 511 TRP HZ2 H N N 512 TRP HZ3 H N N 513 TRP HH2 H N N 514 TRP HXT H N N 515 TYR N N N N 516 TYR CA C N S 517 TYR C C N N 518 TYR O O N N 519 TYR CB C N N 520 TYR CG C Y N 521 TYR CD1 C Y N 522 TYR CD2 C Y N 523 TYR CE1 C Y N 524 TYR CE2 C Y N 525 TYR CZ C Y N 526 TYR OH O N N 527 TYR OXT O N N 528 TYR H H N N 529 TYR H2 H N N 530 TYR HA H N N 531 TYR HB2 H N N 532 TYR HB3 H N N 533 TYR HD1 H N N 534 TYR HD2 H N N 535 TYR HE1 H N N 536 TYR HE2 H N N 537 TYR HH H N N 538 TYR HXT H N N 539 VAL N N N N 540 VAL CA C N S 541 VAL C C N N 542 VAL O O N N 543 VAL CB C N N 544 VAL CG1 C N N 545 VAL CG2 C N N 546 VAL OXT O N N 547 VAL H H N N 548 VAL H2 H N N 549 VAL HA H N N 550 VAL HB H N N 551 VAL HG11 H N N 552 VAL HG12 H N N 553 VAL HG13 H N N 554 VAL HG21 H N N 555 VAL HG22 H N N 556 VAL HG23 H N N 557 VAL HXT H N N 558 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5HC "O4'" "C4'" sing N N 1 5HC "O4'" "C1'" sing N N 2 5HC "C4'" "C5'" sing N N 3 5HC "C4'" "C3'" sing N N 4 5HC O2 C2 doub N N 5 5HC "C1'" N1 sing N N 6 5HC "C1'" "C2'" sing N N 7 5HC "C5'" "O5'" sing N N 8 5HC C2 N1 sing N N 9 5HC C2 N3 sing N N 10 5HC N1 C6 sing N N 11 5HC N3 C4 doub N N 12 5HC "O5'" P sing N N 13 5HC "C2'" "C3'" sing N N 14 5HC C6 C5 doub N N 15 5HC "C3'" "O3'" sing N N 16 5HC P OP1 doub N N 17 5HC P OP2 sing N N 18 5HC C4 C5 sing N N 19 5HC C4 N4 sing N N 20 5HC C5 C5M sing N N 21 5HC C5M O5 sing N N 22 5HC P OP3 sing N N 23 5HC OP2 HOP2 sing N N 24 5HC "C5'" "H5'" sing N N 25 5HC "C5'" "H5''" sing N N 26 5HC "C4'" H4 sing N N 27 5HC "C3'" "H3'" sing N N 28 5HC "O3'" "HO3'" sing N N 29 5HC "C2'" "H2'" sing N N 30 5HC "C2'" "H2''" sing N N 31 5HC "C1'" "H1'" sing N N 32 5HC N4 HN41 sing N N 33 5HC N4 HN42 sing N N 34 5HC C5M H5M2 sing N N 35 5HC C5M H5M1 sing N N 36 5HC O5 HO5 sing N N 37 5HC C6 H6 sing N N 38 5HC OP3 HOP3 sing N N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 DA OP3 P sing N N 109 DA OP3 HOP3 sing N N 110 DA P OP1 doub N N 111 DA P OP2 sing N N 112 DA P "O5'" sing N N 113 DA OP2 HOP2 sing N N 114 DA "O5'" "C5'" sing N N 115 DA "C5'" "C4'" sing N N 116 DA "C5'" "H5'" sing N N 117 DA "C5'" "H5''" sing N N 118 DA "C4'" "O4'" sing N N 119 DA "C4'" "C3'" sing N N 120 DA "C4'" "H4'" sing N N 121 DA "O4'" "C1'" sing N N 122 DA "C3'" "O3'" sing N N 123 DA "C3'" "C2'" sing N N 124 DA "C3'" "H3'" sing N N 125 DA "O3'" "HO3'" sing N N 126 DA "C2'" "C1'" sing N N 127 DA "C2'" "H2'" sing N N 128 DA "C2'" "H2''" sing N N 129 DA "C1'" N9 sing N N 130 DA "C1'" "H1'" sing N N 131 DA N9 C8 sing Y N 132 DA N9 C4 sing Y N 133 DA C8 N7 doub Y N 134 DA C8 H8 sing N N 135 DA N7 C5 sing Y N 136 DA C5 C6 sing Y N 137 DA C5 C4 doub Y N 138 DA C6 N6 sing N N 139 DA C6 N1 doub Y N 140 DA N6 H61 sing N N 141 DA N6 H62 sing N N 142 DA N1 C2 sing Y N 143 DA C2 N3 doub Y N 144 DA C2 H2 sing N N 145 DA N3 C4 sing Y N 146 DC OP3 P sing N N 147 DC OP3 HOP3 sing N N 148 DC P OP1 doub N N 149 DC P OP2 sing N N 150 DC P "O5'" sing N N 151 DC OP2 HOP2 sing N N 152 DC "O5'" "C5'" sing N N 153 DC "C5'" "C4'" sing N N 154 DC "C5'" "H5'" sing N N 155 DC "C5'" "H5''" sing N N 156 DC "C4'" "O4'" sing N N 157 DC "C4'" "C3'" sing N N 158 DC "C4'" "H4'" sing N N 159 DC "O4'" "C1'" sing N N 160 DC "C3'" "O3'" sing N N 161 DC "C3'" "C2'" sing N N 162 DC "C3'" "H3'" sing N N 163 DC "O3'" "HO3'" sing N N 164 DC "C2'" "C1'" sing N N 165 DC "C2'" "H2'" sing N N 166 DC "C2'" "H2''" sing N N 167 DC "C1'" N1 sing N N 168 DC "C1'" "H1'" sing N N 169 DC N1 C2 sing N N 170 DC N1 C6 sing N N 171 DC C2 O2 doub N N 172 DC C2 N3 sing N N 173 DC N3 C4 doub N N 174 DC C4 N4 sing N N 175 DC C4 C5 sing N N 176 DC N4 H41 sing N N 177 DC N4 H42 sing N N 178 DC C5 C6 doub N N 179 DC C5 H5 sing N N 180 DC C6 H6 sing N N 181 DG OP3 P sing N N 182 DG OP3 HOP3 sing N N 183 DG P OP1 doub N N 184 DG P OP2 sing N N 185 DG P "O5'" sing N N 186 DG OP2 HOP2 sing N N 187 DG "O5'" "C5'" sing N N 188 DG "C5'" "C4'" sing N N 189 DG "C5'" "H5'" sing N N 190 DG "C5'" "H5''" sing N N 191 DG "C4'" "O4'" sing N N 192 DG "C4'" "C3'" sing N N 193 DG "C4'" "H4'" sing N N 194 DG "O4'" "C1'" sing N N 195 DG "C3'" "O3'" sing N N 196 DG "C3'" "C2'" sing N N 197 DG "C3'" "H3'" sing N N 198 DG "O3'" "HO3'" sing N N 199 DG "C2'" "C1'" sing N N 200 DG "C2'" "H2'" sing N N 201 DG "C2'" "H2''" sing N N 202 DG "C1'" N9 sing N N 203 DG "C1'" "H1'" sing N N 204 DG N9 C8 sing Y N 205 DG N9 C4 sing Y N 206 DG C8 N7 doub Y N 207 DG C8 H8 sing N N 208 DG N7 C5 sing Y N 209 DG C5 C6 sing N N 210 DG C5 C4 doub Y N 211 DG C6 O6 doub N N 212 DG C6 N1 sing N N 213 DG N1 C2 sing N N 214 DG N1 H1 sing N N 215 DG C2 N2 sing N N 216 DG C2 N3 doub N N 217 DG N2 H21 sing N N 218 DG N2 H22 sing N N 219 DG N3 C4 sing N N 220 DT OP3 P sing N N 221 DT OP3 HOP3 sing N N 222 DT P OP1 doub N N 223 DT P OP2 sing N N 224 DT P "O5'" sing N N 225 DT OP2 HOP2 sing N N 226 DT "O5'" "C5'" sing N N 227 DT "C5'" "C4'" sing N N 228 DT "C5'" "H5'" sing N N 229 DT "C5'" "H5''" sing N N 230 DT "C4'" "O4'" sing N N 231 DT "C4'" "C3'" sing N N 232 DT "C4'" "H4'" sing N N 233 DT "O4'" "C1'" sing N N 234 DT "C3'" "O3'" sing N N 235 DT "C3'" "C2'" sing N N 236 DT "C3'" "H3'" sing N N 237 DT "O3'" "HO3'" sing N N 238 DT "C2'" "C1'" sing N N 239 DT "C2'" "H2'" sing N N 240 DT "C2'" "H2''" sing N N 241 DT "C1'" N1 sing N N 242 DT "C1'" "H1'" sing N N 243 DT N1 C2 sing N N 244 DT N1 C6 sing N N 245 DT C2 O2 doub N N 246 DT C2 N3 sing N N 247 DT N3 C4 sing N N 248 DT N3 H3 sing N N 249 DT C4 O4 doub N N 250 DT C4 C5 sing N N 251 DT C5 C7 sing N N 252 DT C5 C6 doub N N 253 DT C7 H71 sing N N 254 DT C7 H72 sing N N 255 DT C7 H73 sing N N 256 DT C6 H6 sing N N 257 GLN N CA sing N N 258 GLN N H sing N N 259 GLN N H2 sing N N 260 GLN CA C sing N N 261 GLN CA CB sing N N 262 GLN CA HA sing N N 263 GLN C O doub N N 264 GLN C OXT sing N N 265 GLN CB CG sing N N 266 GLN CB HB2 sing N N 267 GLN CB HB3 sing N N 268 GLN CG CD sing N N 269 GLN CG HG2 sing N N 270 GLN CG HG3 sing N N 271 GLN CD OE1 doub N N 272 GLN CD NE2 sing N N 273 GLN NE2 HE21 sing N N 274 GLN NE2 HE22 sing N N 275 GLN OXT HXT sing N N 276 GLU N CA sing N N 277 GLU N H sing N N 278 GLU N H2 sing N N 279 GLU CA C sing N N 280 GLU CA CB sing N N 281 GLU CA HA sing N N 282 GLU C O doub N N 283 GLU C OXT sing N N 284 GLU CB CG sing N N 285 GLU CB HB2 sing N N 286 GLU CB HB3 sing N N 287 GLU CG CD sing N N 288 GLU CG HG2 sing N N 289 GLU CG HG3 sing N N 290 GLU CD OE1 doub N N 291 GLU CD OE2 sing N N 292 GLU OE2 HE2 sing N N 293 GLU OXT HXT sing N N 294 GLY N CA sing N N 295 GLY N H sing N N 296 GLY N H2 sing N N 297 GLY CA C sing N N 298 GLY CA HA2 sing N N 299 GLY CA HA3 sing N N 300 GLY C O doub N N 301 GLY C OXT sing N N 302 GLY OXT HXT sing N N 303 HIS N CA sing N N 304 HIS N H sing N N 305 HIS N H2 sing N N 306 HIS CA C sing N N 307 HIS CA CB sing N N 308 HIS CA HA sing N N 309 HIS C O doub N N 310 HIS C OXT sing N N 311 HIS CB CG sing N N 312 HIS CB HB2 sing N N 313 HIS CB HB3 sing N N 314 HIS CG ND1 sing Y N 315 HIS CG CD2 doub Y N 316 HIS ND1 CE1 doub Y N 317 HIS ND1 HD1 sing N N 318 HIS CD2 NE2 sing Y N 319 HIS CD2 HD2 sing N N 320 HIS CE1 NE2 sing Y N 321 HIS CE1 HE1 sing N N 322 HIS NE2 HE2 sing N N 323 HIS OXT HXT sing N N 324 HOH O H1 sing N N 325 HOH O H2 sing N N 326 ILE N CA sing N N 327 ILE N H sing N N 328 ILE N H2 sing N N 329 ILE CA C sing N N 330 ILE CA CB sing N N 331 ILE CA HA sing N N 332 ILE C O doub N N 333 ILE C OXT sing N N 334 ILE CB CG1 sing N N 335 ILE CB CG2 sing N N 336 ILE CB HB sing N N 337 ILE CG1 CD1 sing N N 338 ILE CG1 HG12 sing N N 339 ILE CG1 HG13 sing N N 340 ILE CG2 HG21 sing N N 341 ILE CG2 HG22 sing N N 342 ILE CG2 HG23 sing N N 343 ILE CD1 HD11 sing N N 344 ILE CD1 HD12 sing N N 345 ILE CD1 HD13 sing N N 346 ILE OXT HXT sing N N 347 LEU N CA sing N N 348 LEU N H sing N N 349 LEU N H2 sing N N 350 LEU CA C sing N N 351 LEU CA CB sing N N 352 LEU CA HA sing N N 353 LEU C O doub N N 354 LEU C OXT sing N N 355 LEU CB CG sing N N 356 LEU CB HB2 sing N N 357 LEU CB HB3 sing N N 358 LEU CG CD1 sing N N 359 LEU CG CD2 sing N N 360 LEU CG HG sing N N 361 LEU CD1 HD11 sing N N 362 LEU CD1 HD12 sing N N 363 LEU CD1 HD13 sing N N 364 LEU CD2 HD21 sing N N 365 LEU CD2 HD22 sing N N 366 LEU CD2 HD23 sing N N 367 LEU OXT HXT sing N N 368 LYS N CA sing N N 369 LYS N H sing N N 370 LYS N H2 sing N N 371 LYS CA C sing N N 372 LYS CA CB sing N N 373 LYS CA HA sing N N 374 LYS C O doub N N 375 LYS C OXT sing N N 376 LYS CB CG sing N N 377 LYS CB HB2 sing N N 378 LYS CB HB3 sing N N 379 LYS CG CD sing N N 380 LYS CG HG2 sing N N 381 LYS CG HG3 sing N N 382 LYS CD CE sing N N 383 LYS CD HD2 sing N N 384 LYS CD HD3 sing N N 385 LYS CE NZ sing N N 386 LYS CE HE2 sing N N 387 LYS CE HE3 sing N N 388 LYS NZ HZ1 sing N N 389 LYS NZ HZ2 sing N N 390 LYS NZ HZ3 sing N N 391 LYS OXT HXT sing N N 392 MET N CA sing N N 393 MET N H sing N N 394 MET N H2 sing N N 395 MET CA C sing N N 396 MET CA CB sing N N 397 MET CA HA sing N N 398 MET C O doub N N 399 MET C OXT sing N N 400 MET CB CG sing N N 401 MET CB HB2 sing N N 402 MET CB HB3 sing N N 403 MET CG SD sing N N 404 MET CG HG2 sing N N 405 MET CG HG3 sing N N 406 MET SD CE sing N N 407 MET CE HE1 sing N N 408 MET CE HE2 sing N N 409 MET CE HE3 sing N N 410 MET OXT HXT sing N N 411 PHE N CA sing N N 412 PHE N H sing N N 413 PHE N H2 sing N N 414 PHE CA C sing N N 415 PHE CA CB sing N N 416 PHE CA HA sing N N 417 PHE C O doub N N 418 PHE C OXT sing N N 419 PHE CB CG sing N N 420 PHE CB HB2 sing N N 421 PHE CB HB3 sing N N 422 PHE CG CD1 doub Y N 423 PHE CG CD2 sing Y N 424 PHE CD1 CE1 sing Y N 425 PHE CD1 HD1 sing N N 426 PHE CD2 CE2 doub Y N 427 PHE CD2 HD2 sing N N 428 PHE CE1 CZ doub Y N 429 PHE CE1 HE1 sing N N 430 PHE CE2 CZ sing Y N 431 PHE CE2 HE2 sing N N 432 PHE CZ HZ sing N N 433 PHE OXT HXT sing N N 434 PRO N CA sing N N 435 PRO N CD sing N N 436 PRO N H sing N N 437 PRO CA C sing N N 438 PRO CA CB sing N N 439 PRO CA HA sing N N 440 PRO C O doub N N 441 PRO C OXT sing N N 442 PRO CB CG sing N N 443 PRO CB HB2 sing N N 444 PRO CB HB3 sing N N 445 PRO CG CD sing N N 446 PRO CG HG2 sing N N 447 PRO CG HG3 sing N N 448 PRO CD HD2 sing N N 449 PRO CD HD3 sing N N 450 PRO OXT HXT sing N N 451 SER N CA sing N N 452 SER N H sing N N 453 SER N H2 sing N N 454 SER CA C sing N N 455 SER CA CB sing N N 456 SER CA HA sing N N 457 SER C O doub N N 458 SER C OXT sing N N 459 SER CB OG sing N N 460 SER CB HB2 sing N N 461 SER CB HB3 sing N N 462 SER OG HG sing N N 463 SER OXT HXT sing N N 464 THR N CA sing N N 465 THR N H sing N N 466 THR N H2 sing N N 467 THR CA C sing N N 468 THR CA CB sing N N 469 THR CA HA sing N N 470 THR C O doub N N 471 THR C OXT sing N N 472 THR CB OG1 sing N N 473 THR CB CG2 sing N N 474 THR CB HB sing N N 475 THR OG1 HG1 sing N N 476 THR CG2 HG21 sing N N 477 THR CG2 HG22 sing N N 478 THR CG2 HG23 sing N N 479 THR OXT HXT sing N N 480 TRP N CA sing N N 481 TRP N H sing N N 482 TRP N H2 sing N N 483 TRP CA C sing N N 484 TRP CA CB sing N N 485 TRP CA HA sing N N 486 TRP C O doub N N 487 TRP C OXT sing N N 488 TRP CB CG sing N N 489 TRP CB HB2 sing N N 490 TRP CB HB3 sing N N 491 TRP CG CD1 doub Y N 492 TRP CG CD2 sing Y N 493 TRP CD1 NE1 sing Y N 494 TRP CD1 HD1 sing N N 495 TRP CD2 CE2 doub Y N 496 TRP CD2 CE3 sing Y N 497 TRP NE1 CE2 sing Y N 498 TRP NE1 HE1 sing N N 499 TRP CE2 CZ2 sing Y N 500 TRP CE3 CZ3 doub Y N 501 TRP CE3 HE3 sing N N 502 TRP CZ2 CH2 doub Y N 503 TRP CZ2 HZ2 sing N N 504 TRP CZ3 CH2 sing Y N 505 TRP CZ3 HZ3 sing N N 506 TRP CH2 HH2 sing N N 507 TRP OXT HXT sing N N 508 TYR N CA sing N N 509 TYR N H sing N N 510 TYR N H2 sing N N 511 TYR CA C sing N N 512 TYR CA CB sing N N 513 TYR CA HA sing N N 514 TYR C O doub N N 515 TYR C OXT sing N N 516 TYR CB CG sing N N 517 TYR CB HB2 sing N N 518 TYR CB HB3 sing N N 519 TYR CG CD1 doub Y N 520 TYR CG CD2 sing Y N 521 TYR CD1 CE1 sing Y N 522 TYR CD1 HD1 sing N N 523 TYR CD2 CE2 doub Y N 524 TYR CD2 HD2 sing N N 525 TYR CE1 CZ doub Y N 526 TYR CE1 HE1 sing N N 527 TYR CE2 CZ sing Y N 528 TYR CE2 HE2 sing N N 529 TYR CZ OH sing N N 530 TYR OH HH sing N N 531 TYR OXT HXT sing N N 532 VAL N CA sing N N 533 VAL N H sing N N 534 VAL N H2 sing N N 535 VAL CA C sing N N 536 VAL CA CB sing N N 537 VAL CA HA sing N N 538 VAL C O doub N N 539 VAL C OXT sing N N 540 VAL CB CG1 sing N N 541 VAL CB CG2 sing N N 542 VAL CB HB sing N N 543 VAL CG1 HG11 sing N N 544 VAL CG1 HG12 sing N N 545 VAL CG1 HG13 sing N N 546 VAL CG2 HG21 sing N N 547 VAL CG2 HG22 sing N N 548 VAL CG2 HG23 sing N N 549 VAL OXT HXT sing N N 550 # _ndb_struct_conf_na.entry_id 4YGI _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 B DT 10 7_555 -0.029 -0.078 -0.314 -14.310 -4.105 4.557 1 B_DA1:DT10_B B 1 ? B 10 ? 20 1 1 B DC 2 1_555 B DG 9 7_555 -0.317 -0.204 -0.091 2.841 -9.550 -1.041 2 B_DC2:DG9_B B 2 ? B 9 ? 19 1 1 B DT 3 1_555 B DA 8 7_555 0.226 -0.287 0.192 1.618 -9.336 1.987 3 B_DT3:DA8_B B 3 ? B 8 ? 20 1 1 B DA 4 1_555 B DT 7 7_555 -0.186 -0.182 0.083 11.678 -7.553 6.559 4 B_DA4:DT7_B B 4 ? B 7 ? 20 1 1 B DA 1 1_555 B DT 10 1_555 -0.029 -0.078 -0.314 -14.310 -4.105 4.557 5 B_DA1:DT10_B B 1 ? B 10 ? 20 1 1 B DC 2 1_555 B DG 9 1_555 -0.317 -0.204 -0.091 2.841 -9.550 -1.041 6 B_DC2:DG9_B B 2 ? B 9 ? 19 1 1 B DT 3 1_555 B DA 8 1_555 0.226 -0.287 0.192 1.618 -9.336 1.987 7 B_DT3:DA8_B B 3 ? B 8 ? 20 1 1 B DA 4 1_555 B DT 7 1_555 -0.186 -0.182 0.083 11.678 -7.553 6.559 8 B_DA4:DT7_B B 4 ? B 7 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 B DT 10 7_555 B DC 2 1_555 B DG 9 7_555 -0.273 -0.404 2.954 -1.520 -0.909 28.822 -0.626 0.240 2.976 -1.824 3.051 28.876 1 BB_DA1DC2:DG9DT10_BB B 1 ? B 10 ? B 2 ? B 9 ? 1 B DC 2 1_555 B DG 9 7_555 B DT 3 1_555 B DA 8 7_555 0.278 -0.429 3.384 -0.426 -1.253 32.683 -0.538 -0.571 3.394 -2.226 0.756 32.709 2 BB_DC2DT3:DA8DG9_BB B 2 ? B 9 ? B 3 ? B 8 ? 1 B DT 3 1_555 B DA 8 7_555 B DA 4 1_555 B DT 7 7_555 0.793 0.133 3.022 3.836 9.754 30.753 -1.383 -0.781 2.999 17.756 -6.984 32.449 3 BB_DT3DA4:DT7DA8_BB B 3 ? B 8 ? B 4 ? B 7 ? 1 B DA 1 1_555 B DT 10 1_555 B DC 2 1_555 B DG 9 1_555 -0.273 -0.404 2.954 -1.520 -0.909 28.822 -0.626 0.240 2.976 -1.824 3.051 28.876 4 BB_DA1DC2:DG9DT10_BB B 1 ? B 10 ? B 2 ? B 9 ? 1 B DC 2 1_555 B DG 9 1_555 B DT 3 1_555 B DA 8 1_555 0.278 -0.429 3.384 -0.426 -1.253 32.683 -0.538 -0.571 3.394 -2.226 0.756 32.709 5 BB_DC2DT3:DA8DG9_BB B 2 ? B 9 ? B 3 ? B 8 ? 1 B DT 3 1_555 B DA 8 1_555 B DA 4 1_555 B DT 7 1_555 0.793 0.133 3.022 3.836 9.754 30.753 -1.383 -0.781 2.999 17.756 -6.984 32.449 6 BB_DT3DA4:DT7DA8_BB B 3 ? B 8 ? B 4 ? B 7 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3Q0B _pdbx_initial_refinement_model.details ? #