HEADER HYDROLASE 26-FEB-15 4YGX TITLE CRYSTAL STRUCTURE OF D. MELANOGASTER SSU72+SYMPLEKIN BOUND TO CIS TITLE 2 PEPTIDOMIMETIC CTD PHOSPHO-SER5 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYMPLEKIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LD40846P; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: SSU72 ORTHOLOG,ISOFORM A,ISOFORM C; COMPND 9 EC: 3.1.3.-,3.1.3.16,3.1.3.41; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: CIS PEPTIDOMIMETIC CTD PHOSPHO-SER5 PEPTIDE; COMPND 14 CHAIN: E; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SYM, CG2097; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 10 ORGANISM_COMMON: FRUIT FLY; SOURCE 11 ORGANISM_TAXID: 7227; SOURCE 12 GENE: SSU72, CG14216, DMEL_CG14216; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS PHOSPHATASE, PEPTIDOMIMETIC, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.MAYFIELD,Y.ZHANG REVDAT 2 28-OCT-15 4YGX 1 JRNL REVDAT 1 16-SEP-15 4YGX 0 JRNL AUTH J.E.MAYFIELD,S.FAN,S.WEI,M.ZHANG,B.LI,A.D.ELLINGTON, JRNL AUTH 2 F.A.ETZKORN,Y.J.ZHANG JRNL TITL CHEMICAL TOOLS TO DECIPHER REGULATION OF PHOSPHATASES BY JRNL TITL 2 PROLINE ISOMERIZATION ON EUKARYOTIC RNA POLYMERASE II. JRNL REF ACS CHEM.BIOL. V. 10 2405 2015 JRNL REFN ESSN 1554-8937 JRNL PMID 26332362 JRNL DOI 10.1021/ACSCHEMBIO.5B00296 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1844 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2411 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8147 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.548 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.375 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.296 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.393 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8264 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8114 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11137 ; 1.741 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18668 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1023 ; 4.077 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 390 ;40.423 ;25.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1583 ;18.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;20.158 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1295 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9281 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1807 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4114 ; 6.508 ; 8.567 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4113 ; 6.508 ; 8.566 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5132 ; 9.789 ;12.844 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4YGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.89900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OPTIMIZED SSU72-SYMPLEKIN CRYSTALS REMARK 280 WERE OBTAINED WITH RESERVOIR SOLUTION CONSISTING OF 12% PEG3350 REMARK 280 (W/V) AND 100 MM HEPE. TO OBTAIN THE TERTIARY COMPLEX STRUCTURE REMARK 280 OF DROSOPHILA SSU72-SYMPLEKIN-CIS-LOCKED PEPTIDE, CRYSTALS OF REMARK 280 SSU72-SYMPLEKIN WERE SOAKED IN A MOTHER SOLUTION CONTAINING 2 MM REMARK 280 11MER PEPTIDE OVERNIGHT AT ROOM TEMPERATURE, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 13 REMARK 465 PRO A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 GLY A 17 REMARK 465 GLN A 351 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 GLY B 47 REMARK 465 MET B 48 REMARK 465 GLY C 13 REMARK 465 PRO C 14 REMARK 465 GLY C 15 REMARK 465 SER C 16 REMARK 465 GLY C 17 REMARK 465 MET C 18 REMARK 465 THR C 19 REMARK 465 ASP C 20 REMARK 465 GLU C 21 REMARK 465 LYS C 22 REMARK 465 THR C 23 REMARK 465 ALA C 24 REMARK 465 THR C 25 REMARK 465 ALA C 26 REMARK 465 ARG C 27 REMARK 465 ALA C 28 REMARK 465 LYS C 29 REMARK 465 VAL C 30 REMARK 465 VAL C 31 REMARK 465 ASP C 32 REMARK 465 TRP C 33 REMARK 465 CYS C 34 REMARK 465 ASN C 35 REMARK 465 GLU C 36 REMARK 465 LEU C 37 REMARK 465 VAL C 38 REMARK 465 ILE C 39 REMARK 465 ALA C 40 REMARK 465 SER C 41 REMARK 465 GLN C 351 REMARK 465 GLY D -4 REMARK 465 PRO D -3 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 GLY D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASP D 3 REMARK 465 ACE E -2 REMARK 465 SER E -1 REMARK 465 PRO E 0 REMARK 465 TYR E 1 REMARK 465 TYR E 7 REMARK 465 SER E 8 REMARK 465 NH2 E 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 15 CB SER B 15 OG 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 15 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG B 19 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG D 184 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 4CG E 5 CA - C - N ANGL. DEV. = 57.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 55 -62.14 -91.57 REMARK 500 GLN A 188 47.58 -94.34 REMARK 500 PRO A 259 -4.35 -58.73 REMARK 500 LYS B 6 45.59 -102.66 REMARK 500 MET B 17 -58.54 -126.49 REMARK 500 ASN B 18 -73.90 -95.84 REMARK 500 LEU C 57 -66.90 -95.04 REMARK 500 GLN C 188 51.16 -93.50 REMARK 500 PRO C 259 -5.06 -57.88 REMARK 500 ASP D 13 -154.65 -145.41 REMARK 500 MET D 17 -52.88 -128.23 REMARK 500 ASN D 18 -72.73 -100.13 REMARK 500 ASP D 73 94.67 -161.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 112 10.73 REMARK 500 4CG E 5 -178.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YGY RELATED DB: PDB REMARK 900 RELATED ID: 4YH1 RELATED DB: PDB DBREF 4YGX A 19 351 UNP Q8MSU4 SYMPK_DROME 19 351 DBREF 4YGX B 1 195 UNP Q9VWE4 Q9VWE4_DROME 1 195 DBREF 4YGX C 19 351 UNP Q8MSU4 SYMPK_DROME 19 351 DBREF 4YGX D 1 195 UNP Q9VWE4 Q9VWE4_DROME 1 195 DBREF 4YGX E -2 9 PDB 4YGX 4YGX -2 9 SEQADV 4YGX GLY A 13 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX PRO A 14 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX GLY A 15 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX SER A 16 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX GLY A 17 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX MET A 18 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX GLY B -4 UNP Q9VWE4 EXPRESSION TAG SEQADV 4YGX PRO B -3 UNP Q9VWE4 EXPRESSION TAG SEQADV 4YGX GLY B -2 UNP Q9VWE4 EXPRESSION TAG SEQADV 4YGX SER B -1 UNP Q9VWE4 EXPRESSION TAG SEQADV 4YGX GLY B 0 UNP Q9VWE4 EXPRESSION TAG SEQADV 4YGX ASP B 13 UNP Q9VWE4 CYS 13 ENGINEERED MUTATION SEQADV 4YGX ASN B 144 UNP Q9VWE4 ASP 144 ENGINEERED MUTATION SEQADV 4YGX GLY C 13 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX PRO C 14 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX GLY C 15 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX SER C 16 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX GLY C 17 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX MET C 18 UNP Q8MSU4 EXPRESSION TAG SEQADV 4YGX GLY D -4 UNP Q9VWE4 EXPRESSION TAG SEQADV 4YGX PRO D -3 UNP Q9VWE4 EXPRESSION TAG SEQADV 4YGX GLY D -2 UNP Q9VWE4 EXPRESSION TAG SEQADV 4YGX SER D -1 UNP Q9VWE4 EXPRESSION TAG SEQADV 4YGX GLY D 0 UNP Q9VWE4 EXPRESSION TAG SEQADV 4YGX ASP D 13 UNP Q9VWE4 CYS 13 ENGINEERED MUTATION SEQADV 4YGX ASN D 144 UNP Q9VWE4 ASP 144 ENGINEERED MUTATION SEQRES 1 A 339 GLY PRO GLY SER GLY MET THR ASP GLU LYS THR ALA THR SEQRES 2 A 339 ALA ARG ALA LYS VAL VAL ASP TRP CYS ASN GLU LEU VAL SEQRES 3 A 339 ILE ALA SER PRO SER THR LYS CYS GLU LEU LEU ALA LYS SEQRES 4 A 339 VAL GLN GLU THR VAL LEU GLY SER CYS ALA GLU LEU ALA SEQRES 5 A 339 GLU GLU PHE LEU GLU SER VAL LEU SER LEU ALA HIS ASP SEQRES 6 A 339 SER ASN MET GLU VAL ARG LYS GLN VAL VAL ALA PHE VAL SEQRES 7 A 339 GLU GLN VAL CYS LYS VAL LYS VAL GLU LEU LEU PRO HIS SEQRES 8 A 339 VAL ILE ASN VAL VAL SER MET LEU LEU ARG ASP ASN SER SEQRES 9 A 339 ALA GLN VAL ILE LYS ARG VAL ILE GLN ALA CYS GLY SER SEQRES 10 A 339 ILE TYR LYS ASN GLY LEU GLN TYR LEU CYS SER LEU MET SEQRES 11 A 339 GLU PRO GLY ASP SER ALA GLU GLN ALA TRP ASN ILE LEU SEQRES 12 A 339 SER LEU ILE LYS ALA GLN ILE LEU ASP MET ILE ASP ASN SEQRES 13 A 339 GLU ASN ASP GLY ILE ARG THR ASN ALA ILE LYS PHE LEU SEQRES 14 A 339 GLU GLY VAL VAL VAL LEU GLN SER PHE ALA ASP GLU ASP SEQRES 15 A 339 SER LEU LYS ARG ASP GLY ASP PHE SER LEU ALA ASP VAL SEQRES 16 A 339 PRO ASP HIS CYS THR LEU PHE ARG ARG GLU LYS LEU GLN SEQRES 17 A 339 GLU GLU GLY ASN ASN ILE LEU ASP ILE LEU LEU GLN PHE SEQRES 18 A 339 HIS GLY THR THR HIS ILE SER SER VAL ASN LEU ILE ALA SEQRES 19 A 339 CYS THR SER SER LEU CYS THR ILE ALA LYS MET ARG PRO SEQRES 20 A 339 ILE PHE MET GLY ALA VAL VAL GLU ALA PHE LYS GLN LEU SEQRES 21 A 339 ASN ALA ASN LEU PRO PRO THR LEU THR ASP SER GLN VAL SEQRES 22 A 339 SER SER VAL ARG LYS SER LEU LYS MET GLN LEU GLN THR SEQRES 23 A 339 LEU LEU LYS ASN ARG GLY ALA PHE GLU PHE ALA SER THR SEQRES 24 A 339 ILE ARG GLY MET LEU VAL ASP LEU GLY SER SER THR ASN SEQRES 25 A 339 GLU ILE GLN LYS LEU ILE PRO LYS MET ASP LYS GLN GLU SEQRES 26 A 339 MET ALA ARG ARG GLN LYS ARG ILE LEU GLU ASN ALA ALA SEQRES 27 A 339 GLN SEQRES 1 B 200 GLY PRO GLY SER GLY MET THR ASP PRO SER LYS LEU ALA SEQRES 2 B 200 VAL ALA VAL VAL ASP SER SER ASN MET ASN ARG SER MET SEQRES 3 B 200 GLU ALA HIS ASN PHE LEU ALA LYS LYS GLY PHE ASN VAL SEQRES 4 B 200 ARG SER TYR GLY THR GLY GLU ARG VAL LYS LEU PRO GLY SEQRES 5 B 200 MET ALA PHE ASP LYS PRO ASN VAL TYR GLU PHE GLY THR SEQRES 6 B 200 LYS TYR GLU ASP ILE TYR ARG ASP LEU GLU SER LYS ASP SEQRES 7 B 200 LYS GLU PHE TYR THR GLN ASN GLY LEU LEU HIS MET LEU SEQRES 8 B 200 ASP ARG ASN ARG ARG ILE LYS LYS CYS PRO GLU ARG PHE SEQRES 9 B 200 GLN ASP THR LYS GLU GLN PHE ASP ILE ILE VAL THR VAL SEQRES 10 B 200 GLU GLU ARG VAL TYR ASP LEU VAL VAL MET HIS MET GLU SEQRES 11 B 200 SER MET GLU SER VAL ASP ASN ARG PRO VAL HIS VAL LEU SEQRES 12 B 200 ASN VAL ASP VAL VAL ASN ASN ALA GLU ASP ALA LEU MET SEQRES 13 B 200 GLY ALA PHE VAL ILE THR ASP MET ILE ASN MET MET ALA SEQRES 14 B 200 LYS SER THR ASP LEU ASP ASN ASP ILE ASP GLU LEU ILE SEQRES 15 B 200 GLN GLU PHE GLU GLU ARG ARG LYS ARG VAL ILE LEU HIS SEQRES 16 B 200 SER VAL LEU PHE TYR SEQRES 1 C 339 GLY PRO GLY SER GLY MET THR ASP GLU LYS THR ALA THR SEQRES 2 C 339 ALA ARG ALA LYS VAL VAL ASP TRP CYS ASN GLU LEU VAL SEQRES 3 C 339 ILE ALA SER PRO SER THR LYS CYS GLU LEU LEU ALA LYS SEQRES 4 C 339 VAL GLN GLU THR VAL LEU GLY SER CYS ALA GLU LEU ALA SEQRES 5 C 339 GLU GLU PHE LEU GLU SER VAL LEU SER LEU ALA HIS ASP SEQRES 6 C 339 SER ASN MET GLU VAL ARG LYS GLN VAL VAL ALA PHE VAL SEQRES 7 C 339 GLU GLN VAL CYS LYS VAL LYS VAL GLU LEU LEU PRO HIS SEQRES 8 C 339 VAL ILE ASN VAL VAL SER MET LEU LEU ARG ASP ASN SER SEQRES 9 C 339 ALA GLN VAL ILE LYS ARG VAL ILE GLN ALA CYS GLY SER SEQRES 10 C 339 ILE TYR LYS ASN GLY LEU GLN TYR LEU CYS SER LEU MET SEQRES 11 C 339 GLU PRO GLY ASP SER ALA GLU GLN ALA TRP ASN ILE LEU SEQRES 12 C 339 SER LEU ILE LYS ALA GLN ILE LEU ASP MET ILE ASP ASN SEQRES 13 C 339 GLU ASN ASP GLY ILE ARG THR ASN ALA ILE LYS PHE LEU SEQRES 14 C 339 GLU GLY VAL VAL VAL LEU GLN SER PHE ALA ASP GLU ASP SEQRES 15 C 339 SER LEU LYS ARG ASP GLY ASP PHE SER LEU ALA ASP VAL SEQRES 16 C 339 PRO ASP HIS CYS THR LEU PHE ARG ARG GLU LYS LEU GLN SEQRES 17 C 339 GLU GLU GLY ASN ASN ILE LEU ASP ILE LEU LEU GLN PHE SEQRES 18 C 339 HIS GLY THR THR HIS ILE SER SER VAL ASN LEU ILE ALA SEQRES 19 C 339 CYS THR SER SER LEU CYS THR ILE ALA LYS MET ARG PRO SEQRES 20 C 339 ILE PHE MET GLY ALA VAL VAL GLU ALA PHE LYS GLN LEU SEQRES 21 C 339 ASN ALA ASN LEU PRO PRO THR LEU THR ASP SER GLN VAL SEQRES 22 C 339 SER SER VAL ARG LYS SER LEU LYS MET GLN LEU GLN THR SEQRES 23 C 339 LEU LEU LYS ASN ARG GLY ALA PHE GLU PHE ALA SER THR SEQRES 24 C 339 ILE ARG GLY MET LEU VAL ASP LEU GLY SER SER THR ASN SEQRES 25 C 339 GLU ILE GLN LYS LEU ILE PRO LYS MET ASP LYS GLN GLU SEQRES 26 C 339 MET ALA ARG ARG GLN LYS ARG ILE LEU GLU ASN ALA ALA SEQRES 27 C 339 GLN SEQRES 1 D 200 GLY PRO GLY SER GLY MET THR ASP PRO SER LYS LEU ALA SEQRES 2 D 200 VAL ALA VAL VAL ASP SER SER ASN MET ASN ARG SER MET SEQRES 3 D 200 GLU ALA HIS ASN PHE LEU ALA LYS LYS GLY PHE ASN VAL SEQRES 4 D 200 ARG SER TYR GLY THR GLY GLU ARG VAL LYS LEU PRO GLY SEQRES 5 D 200 MET ALA PHE ASP LYS PRO ASN VAL TYR GLU PHE GLY THR SEQRES 6 D 200 LYS TYR GLU ASP ILE TYR ARG ASP LEU GLU SER LYS ASP SEQRES 7 D 200 LYS GLU PHE TYR THR GLN ASN GLY LEU LEU HIS MET LEU SEQRES 8 D 200 ASP ARG ASN ARG ARG ILE LYS LYS CYS PRO GLU ARG PHE SEQRES 9 D 200 GLN ASP THR LYS GLU GLN PHE ASP ILE ILE VAL THR VAL SEQRES 10 D 200 GLU GLU ARG VAL TYR ASP LEU VAL VAL MET HIS MET GLU SEQRES 11 D 200 SER MET GLU SER VAL ASP ASN ARG PRO VAL HIS VAL LEU SEQRES 12 D 200 ASN VAL ASP VAL VAL ASN ASN ALA GLU ASP ALA LEU MET SEQRES 13 D 200 GLY ALA PHE VAL ILE THR ASP MET ILE ASN MET MET ALA SEQRES 14 D 200 LYS SER THR ASP LEU ASP ASN ASP ILE ASP GLU LEU ILE SEQRES 15 D 200 GLN GLU PHE GLU GLU ARG ARG LYS ARG VAL ILE LEU HIS SEQRES 16 D 200 SER VAL LEU PHE TYR SEQRES 1 E 12 ACE SER PRO TYR SER PRO THR 4CG SER TYR SER NH2 HET 4CG E 5 16 HETNAM 4CG (1R,2Z)-2-[(2R)-2-AMINO-3-(PHOSPHONOOXY) HETNAM 2 4CG PROPYLIDENE]CYCLOPENTANECARBOXYLIC ACID FORMUL 5 4CG C9 H16 N O6 P FORMUL 6 HOH *10(H2 O) HELIX 1 AA1 GLU A 21 VAL A 38 1 18 HELIX 2 AA2 SER A 41 LEU A 57 1 17 HELIX 3 AA3 CYS A 60 GLU A 65 5 6 HELIX 4 AA4 PHE A 67 SER A 73 1 7 HELIX 5 AA5 LEU A 74 HIS A 76 5 3 HELIX 6 AA6 ASN A 79 LYS A 97 1 19 HELIX 7 AA7 LEU A 100 LEU A 112 1 13 HELIX 8 AA8 SER A 116 CYS A 139 1 24 HELIX 9 AA9 GLY A 145 MET A 165 1 21 HELIX 10 AB1 ILE A 166 ASN A 168 5 3 HELIX 11 AB2 ASN A 170 GLN A 188 1 19 HELIX 12 AB3 SER A 203 VAL A 207 5 5 HELIX 13 AB4 ARG A 215 GLY A 235 1 21 HELIX 14 AB5 SER A 240 ARG A 258 1 19 HELIX 15 AB6 PHE A 261 ASN A 275 1 15 HELIX 16 AB7 THR A 281 LYS A 301 1 21 HELIX 17 AB8 ASN A 302 GLU A 307 5 6 HELIX 18 AB9 PHE A 308 LEU A 319 1 12 HELIX 19 AC1 SER A 322 ILE A 330 1 9 HELIX 20 AC2 ASP A 334 ALA A 350 1 17 HELIX 21 AC3 ASN B 18 LYS B 29 1 12 HELIX 22 AC4 LYS B 61 LYS B 74 1 14 HELIX 23 AC5 GLU B 75 ASN B 80 1 6 HELIX 24 AC6 GLY B 81 LYS B 93 1 13 HELIX 25 AC7 GLU B 113 MET B 127 1 15 HELIX 26 AC8 ASN B 145 LYS B 165 1 21 HELIX 27 AC9 ASP B 168 ARG B 184 1 17 HELIX 28 AD1 SER C 43 LEU C 57 1 15 HELIX 29 AD2 CYS C 60 GLU C 65 5 6 HELIX 30 AD3 PHE C 67 SER C 73 1 7 HELIX 31 AD4 LEU C 74 ASP C 77 5 4 HELIX 32 AD5 ASN C 79 LYS C 97 1 19 HELIX 33 AD6 LEU C 100 LEU C 112 1 13 HELIX 34 AD7 SER C 116 CYS C 139 1 24 HELIX 35 AD8 GLY C 145 MET C 165 1 21 HELIX 36 AD9 ILE C 166 ASN C 168 5 3 HELIX 37 AE1 ASN C 170 GLN C 188 1 19 HELIX 38 AE2 SER C 203 VAL C 207 5 5 HELIX 39 AE3 ARG C 215 GLY C 235 1 21 HELIX 40 AE4 SER C 240 ARG C 258 1 19 HELIX 41 AE5 PHE C 261 ASN C 275 1 15 HELIX 42 AE6 THR C 281 LYS C 301 1 21 HELIX 43 AE7 ASN C 302 GLU C 307 5 6 HELIX 44 AE8 PHE C 308 LEU C 319 1 12 HELIX 45 AE9 SER C 322 ILE C 330 1 9 HELIX 46 AF1 ASP C 334 ALA C 350 1 17 HELIX 47 AF2 ASN D 18 LYS D 30 1 13 HELIX 48 AF3 LYS D 61 LYS D 74 1 14 HELIX 49 AF4 GLU D 75 ASN D 80 1 6 HELIX 50 AF5 GLY D 81 LYS D 93 1 13 HELIX 51 AF6 ARG D 98 THR D 102 5 5 HELIX 52 AF7 GLU D 113 MET D 127 1 15 HELIX 53 AF8 ASN D 145 LYS D 165 1 21 HELIX 54 AF9 ASP D 168 ARG D 184 1 17 SHEET 1 AA1 5 ASN B 33 GLY B 38 0 SHEET 2 AA1 5 ALA B 8 ASP B 13 1 N VAL B 9 O ASN B 33 SHEET 3 AA1 5 ILE B 108 THR B 111 1 O VAL B 110 N ALA B 10 SHEET 4 AA1 5 PRO B 134 ASN B 139 1 O LEU B 138 N ILE B 109 SHEET 5 AA1 5 LEU B 189 PHE B 194 -1 O SER B 191 N VAL B 137 SHEET 1 AA2 2 VAL B 43 LEU B 45 0 SHEET 2 AA2 2 ASN B 54 TYR B 56 -1 O ASN B 54 N LEU B 45 SHEET 1 AA3 5 ASN D 33 GLY D 38 0 SHEET 2 AA3 5 ALA D 8 ASP D 13 1 N VAL D 9 O ASN D 33 SHEET 3 AA3 5 ILE D 108 THR D 111 1 O VAL D 110 N ALA D 10 SHEET 4 AA3 5 PRO D 134 ASN D 139 1 O LEU D 138 N ILE D 109 SHEET 5 AA3 5 LEU D 189 PHE D 194 -1 O SER D 191 N VAL D 137 SHEET 1 AA4 2 VAL D 43 LEU D 45 0 SHEET 2 AA4 2 ASN D 54 TYR D 56 -1 O ASN D 54 N LEU D 45 LINK C THR E 4 N 4CG E 5 1555 1555 1.35 LINK C 4CG E 5 N SER E 6 1555 1555 1.36 CISPEP 1 4CG E 5 SER E 6 0 -2.00 CRYST1 127.880 127.880 105.861 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007820 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009446 0.00000