HEADER HYDROLASE 26-FEB-15 4YGY TITLE CRYSTAL STRUCTURE OF HUMAN SCP1 BOUND TO TRANS-PROLINE PEPTIDOMIMETIC TITLE 2 CTD PHOSPHO-SER5 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXY-TERMINAL DOMAIN RNA POLYMERASE II POLYPEPTIDE A COMPND 3 SMALL PHOSPHATASE 1; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 76-254; COMPND 6 SYNONYM: NUCLEAR LIM INTERACTOR-INTERACTING FACTOR 3,NLI-INTERACTING COMPND 7 FACTOR 3,SMALL C-TERMINAL DOMAIN PHOSPHATASE 1,SMALL CTD PHOSPHATASE COMPND 8 1; COMPND 9 EC: 3.1.3.16; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: PEPTIDOMIMETIC CTD PHOSPHO-SER5 PEPTIDE; COMPND 14 CHAIN: C, D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTDSP1, NIF3, NLIIF, SCP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PHOSPHATASE, PEPTIDOMIMETIC, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.MAYFIELD,Y.ZHANG REVDAT 3 28-OCT-15 4YGY 1 JRNL REVDAT 2 23-SEP-15 4YGY 1 REMARK REVDAT 1 16-SEP-15 4YGY 0 JRNL AUTH J.E.MAYFIELD,S.FAN,S.WEI,M.ZHANG,B.LI,A.D.ELLINGTON, JRNL AUTH 2 F.A.ETZKORN,Y.J.ZHANG JRNL TITL CHEMICAL TOOLS TO DECIPHER REGULATION OF PHOSPHATASES BY JRNL TITL 2 PROLINE ISOMERIZATION ON EUKARYOTIC RNA POLYMERASE II. JRNL REF ACS CHEM.BIOL. V. 10 2405 2015 JRNL REFN ESSN 1554-8937 JRNL PMID 26332362 JRNL DOI 10.1021/ACSCHEMBIO.5B00296 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 21427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : -1.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.255 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3054 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2886 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4156 ; 1.865 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6622 ; 0.862 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 6.998 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;33.468 ;23.506 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;16.224 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3404 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 724 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1458 ; 3.761 ; 4.430 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1458 ; 3.761 ; 4.430 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1814 ; 5.202 ; 6.624 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4YGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03334 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 64.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.2 M MAGNESIUM ACETATE, REMARK 280 PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.64000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.16750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.64000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.16750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 HIS A 75 REMARK 465 GLY A 76 REMARK 465 GLN A 256 REMARK 465 PRO A 257 REMARK 465 ARG A 258 REMARK 465 PRO A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 GLY B 73 REMARK 465 SER B 74 REMARK 465 HIS B 75 REMARK 465 GLY B 76 REMARK 465 GLN B 256 REMARK 465 PRO B 257 REMARK 465 ARG B 258 REMARK 465 PRO B 259 REMARK 465 GLY B 260 REMARK 465 SER B 261 REMARK 465 ACE C -2 REMARK 465 SER C -1 REMARK 465 PRO C 0 REMARK 465 TYR C 1 REMARK 465 SER C 6 REMARK 465 TYR C 7 REMARK 465 SER C 8 REMARK 465 NH2 C 9 REMARK 465 ACE D -2 REMARK 465 SER D -1 REMARK 465 PRO D 0 REMARK 465 TYR D 1 REMARK 465 SER D 6 REMARK 465 TYR D 7 REMARK 465 SER D 8 REMARK 465 NH2 D 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 160 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 98 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 173 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 173 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 97 -72.49 -88.69 REMARK 500 GLU A 99 -5.25 69.20 REMARK 500 THR A 100 -65.68 -101.28 REMARK 500 HIS A 215 54.62 -164.73 REMARK 500 PHE A 226 -57.23 -134.78 REMARK 500 ASP A 227 9.26 -160.86 REMARK 500 PRO B 81 172.86 -59.99 REMARK 500 LEU B 97 -69.47 -101.67 REMARK 500 HIS B 134 9.14 84.17 REMARK 500 PHE B 177 -165.50 -117.32 REMARK 500 PHE B 226 -63.16 -121.61 REMARK 500 ASP B 227 13.81 -154.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 84 ALA A 85 -146.86 REMARK 500 THR D 4 4CG D 5 -143.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 96 OD1 REMARK 620 2 ASP A 98 O 91.2 REMARK 620 3 ASN A 207 OD1 73.3 86.0 REMARK 620 4 4CG C 5 O06 101.6 110.5 163.1 REMARK 620 5 HOH A 411 O 167.1 90.6 94.0 89.7 REMARK 620 6 HOH A 412 O 92.1 157.9 74.1 90.2 81.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 98 O REMARK 620 2 ASN B 207 OD1 73.9 REMARK 620 3 4CG D 5 O08 91.1 141.4 REMARK 620 4 HOH D 101 O 132.3 138.7 77.1 REMARK 620 5 HOH B 411 O 157.7 87.0 97.0 70.0 REMARK 620 6 HOH B 408 O 89.9 98.7 117.0 57.6 104.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand 4CG C 5 bound to THR C 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand 4CG D 5 bound to THR D 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YGX RELATED DB: PDB REMARK 900 RELATED ID: 4YH1 RELATED DB: PDB DBREF 4YGY A 77 261 UNP Q9GZU7 CTDS1_HUMAN 76 260 DBREF 4YGY B 77 261 UNP Q9GZU7 CTDS1_HUMAN 76 260 DBREF 4YGY C -2 9 PDB 4YGY 4YGY -2 9 DBREF 4YGY D -2 9 PDB 4YGY 4YGY -2 9 SEQADV 4YGY GLY A 73 UNP Q9GZU7 EXPRESSION TAG SEQADV 4YGY SER A 74 UNP Q9GZU7 EXPRESSION TAG SEQADV 4YGY HIS A 75 UNP Q9GZU7 EXPRESSION TAG SEQADV 4YGY GLY A 76 UNP Q9GZU7 EXPRESSION TAG SEQADV 4YGY ASN A 96 UNP Q9GZU7 ASP 95 ENGINEERED MUTATION SEQADV 4YGY GLY B 73 UNP Q9GZU7 EXPRESSION TAG SEQADV 4YGY SER B 74 UNP Q9GZU7 EXPRESSION TAG SEQADV 4YGY HIS B 75 UNP Q9GZU7 EXPRESSION TAG SEQADV 4YGY GLY B 76 UNP Q9GZU7 EXPRESSION TAG SEQADV 4YGY ASN B 96 UNP Q9GZU7 ASP 95 ENGINEERED MUTATION SEQRES 1 A 189 GLY SER HIS GLY GLN TYR LEU LEU PRO GLU ALA LYS ALA SEQRES 2 A 189 GLN ASP SER ASP LYS ILE CYS VAL VAL ILE ASN LEU ASP SEQRES 3 A 189 GLU THR LEU VAL HIS SER SER PHE LYS PRO VAL ASN ASN SEQRES 4 A 189 ALA ASP PHE ILE ILE PRO VAL GLU ILE ASP GLY VAL VAL SEQRES 5 A 189 HIS GLN VAL TYR VAL LEU LYS ARG PRO HIS VAL ASP GLU SEQRES 6 A 189 PHE LEU GLN ARG MET GLY GLU LEU PHE GLU CYS VAL LEU SEQRES 7 A 189 PHE THR ALA SER LEU ALA LYS TYR ALA ASP PRO VAL ALA SEQRES 8 A 189 ASP LEU LEU ASP LYS TRP GLY ALA PHE ARG ALA ARG LEU SEQRES 9 A 189 PHE ARG GLU SER CYS VAL PHE HIS ARG GLY ASN TYR VAL SEQRES 10 A 189 LYS ASP LEU SER ARG LEU GLY ARG ASP LEU ARG ARG VAL SEQRES 11 A 189 LEU ILE LEU ASP ASN SER PRO ALA SER TYR VAL PHE HIS SEQRES 12 A 189 PRO ASP ASN ALA VAL PRO VAL ALA SER TRP PHE ASP ASN SEQRES 13 A 189 MET SER ASP THR GLU LEU HIS ASP LEU LEU PRO PHE PHE SEQRES 14 A 189 GLU GLN LEU SER ARG VAL ASP ASP VAL TYR SER VAL LEU SEQRES 15 A 189 ARG GLN PRO ARG PRO GLY SER SEQRES 1 B 189 GLY SER HIS GLY GLN TYR LEU LEU PRO GLU ALA LYS ALA SEQRES 2 B 189 GLN ASP SER ASP LYS ILE CYS VAL VAL ILE ASN LEU ASP SEQRES 3 B 189 GLU THR LEU VAL HIS SER SER PHE LYS PRO VAL ASN ASN SEQRES 4 B 189 ALA ASP PHE ILE ILE PRO VAL GLU ILE ASP GLY VAL VAL SEQRES 5 B 189 HIS GLN VAL TYR VAL LEU LYS ARG PRO HIS VAL ASP GLU SEQRES 6 B 189 PHE LEU GLN ARG MET GLY GLU LEU PHE GLU CYS VAL LEU SEQRES 7 B 189 PHE THR ALA SER LEU ALA LYS TYR ALA ASP PRO VAL ALA SEQRES 8 B 189 ASP LEU LEU ASP LYS TRP GLY ALA PHE ARG ALA ARG LEU SEQRES 9 B 189 PHE ARG GLU SER CYS VAL PHE HIS ARG GLY ASN TYR VAL SEQRES 10 B 189 LYS ASP LEU SER ARG LEU GLY ARG ASP LEU ARG ARG VAL SEQRES 11 B 189 LEU ILE LEU ASP ASN SER PRO ALA SER TYR VAL PHE HIS SEQRES 12 B 189 PRO ASP ASN ALA VAL PRO VAL ALA SER TRP PHE ASP ASN SEQRES 13 B 189 MET SER ASP THR GLU LEU HIS ASP LEU LEU PRO PHE PHE SEQRES 14 B 189 GLU GLN LEU SER ARG VAL ASP ASP VAL TYR SER VAL LEU SEQRES 15 B 189 ARG GLN PRO ARG PRO GLY SER SEQRES 1 C 12 ACE SER PRO TYR SER PRO THR 4CG SER TYR SER NH2 SEQRES 1 D 12 ACE SER PRO TYR SER PRO THR 4CG SER TYR SER NH2 HET 4CG C 5 16 HET 4CG D 5 16 HET MG A 301 1 HET MG B 301 1 HETNAM 4CG (1R,2Z)-2-[(2R)-2-AMINO-3-(PHOSPHONOOXY) HETNAM 2 4CG PROPYLIDENE]CYCLOPENTANECARBOXYLIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 4CG 2(C9 H16 N O6 P) FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *62(H2 O) HELIX 1 AA1 LYS A 84 SER A 88 5 5 HELIX 2 AA2 HIS A 134 PHE A 146 1 13 HELIX 3 AA3 LEU A 155 ASP A 167 1 13 HELIX 4 AA4 PHE A 177 CYS A 181 5 5 HELIX 5 AA5 ASP A 191 LEU A 195 5 5 HELIX 6 AA6 ASP A 198 ARG A 200 5 3 HELIX 7 AA7 SER A 208 VAL A 213 5 6 HELIX 8 AA8 HIS A 215 ASP A 217 5 3 HELIX 9 AA9 THR A 232 SER A 245 1 14 HELIX 10 AB1 VAL A 250 ARG A 255 1 6 HELIX 11 AB2 HIS B 134 PHE B 146 1 13 HELIX 12 AB3 LEU B 155 ASP B 167 1 13 HELIX 13 AB4 PHE B 177 CYS B 181 5 5 HELIX 14 AB5 ASP B 191 LEU B 195 5 5 HELIX 15 AB6 ASP B 198 ARG B 200 5 3 HELIX 16 AB7 SER B 208 VAL B 213 5 6 HELIX 17 AB8 HIS B 215 ASP B 217 5 3 HELIX 18 AB9 THR B 232 SER B 245 1 14 HELIX 19 AC1 VAL B 250 ARG B 255 1 6 SHEET 1 AA1 5 PHE A 172 LEU A 176 0 SHEET 2 AA1 5 GLU A 147 PHE A 151 1 N CYS A 148 O ARG A 173 SHEET 3 AA1 5 CYS A 92 ILE A 95 1 N ILE A 95 O VAL A 149 SHEET 4 AA1 5 VAL A 202 ASP A 206 1 O LEU A 203 N VAL A 94 SHEET 5 AA1 5 ALA A 219 PRO A 221 1 O VAL A 220 N ILE A 204 SHEET 1 AA2 3 VAL A 102 SER A 105 0 SHEET 2 AA2 3 VAL A 123 LYS A 131 -1 O TYR A 128 N SER A 105 SHEET 3 AA2 3 PHE A 114 ILE A 120 -1 N VAL A 118 O HIS A 125 SHEET 1 AA3 2 VAL A 182 HIS A 184 0 SHEET 2 AA3 2 ASN A 187 VAL A 189 -1 O VAL A 189 N VAL A 182 SHEET 1 AA4 5 PHE B 172 LEU B 176 0 SHEET 2 AA4 5 GLU B 147 PHE B 151 1 N CYS B 148 O ARG B 173 SHEET 3 AA4 5 CYS B 92 ILE B 95 1 N ILE B 95 O VAL B 149 SHEET 4 AA4 5 VAL B 202 ASP B 206 1 O LEU B 203 N VAL B 94 SHEET 5 AA4 5 ALA B 219 PRO B 221 1 O VAL B 220 N ILE B 204 SHEET 1 AA5 3 VAL B 102 SER B 105 0 SHEET 2 AA5 3 VAL B 123 LYS B 131 -1 O LEU B 130 N HIS B 103 SHEET 3 AA5 3 PHE B 114 ILE B 120 -1 N VAL B 118 O HIS B 125 SHEET 1 AA6 2 VAL B 182 HIS B 184 0 SHEET 2 AA6 2 ASN B 187 VAL B 189 -1 O ASN B 187 N HIS B 184 LINK OD1 ASN A 96 MG MG A 301 1555 1555 2.14 LINK O ASP A 98 MG MG A 301 1555 1555 2.05 LINK OD1 ASN A 207 MG MG A 301 1555 1555 2.56 LINK O ASP B 98 MG MG B 301 1555 1555 2.41 LINK OD1 ASN B 207 MG MG B 301 1555 1555 2.54 LINK C THR C 4 N 4CG C 5 1555 1555 1.36 LINK O06 4CG C 5 MG MG A 301 1555 1555 1.82 LINK C THR D 4 N 4CG D 5 1555 1555 1.35 LINK O08 4CG D 5 MG MG B 301 1555 1555 1.91 LINK MG MG A 301 O HOH A 411 1555 1555 2.26 LINK MG MG A 301 O HOH A 412 1555 1555 2.23 LINK MG MG B 301 O HOH D 101 1555 1555 2.71 LINK MG MG B 301 O HOH B 411 1555 1555 2.11 LINK MG MG B 301 O HOH B 408 1555 1555 2.13 SITE 1 AC1 6 ASN A 96 ASP A 98 ASN A 207 HOH A 411 SITE 2 AC1 6 HOH A 412 4CG C 5 SITE 1 AC2 7 ASN B 96 ASP B 98 ASN B 207 HOH B 408 SITE 2 AC2 7 HOH B 411 4CG D 5 HOH D 101 SITE 1 AC3 11 ASN A 96 LEU A 97 ASP A 98 THR A 152 SITE 2 AC3 11 ALA A 153 SER A 154 LYS A 190 MG A 301 SITE 3 AC3 11 HOH A 411 HOH A 412 THR C 4 SITE 1 AC4 11 ASN B 96 LEU B 97 ASP B 98 THR B 152 SITE 2 AC4 11 ALA B 153 ARG B 178 LYS B 190 MG B 301 SITE 3 AC4 11 HOH B 411 THR D 4 HOH D 101 CRYST1 125.280 78.335 63.031 90.00 112.59 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007982 0.000000 0.003321 0.00000 SCALE2 0.000000 0.012766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017184 0.00000