HEADER IMMUNE SYSTEM 27-FEB-15 4YH6 TITLE CRYSTAL STRUCTURE OF IL1RAPL1 ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR ACCESSORY PROTEIN-LIKE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 19-352; COMPND 5 SYNONYM: IL1RAPL-1,X-LINKED INTERLEUKIN-1 RECEPTOR ACCESSORY PROTEIN- COMPND 6 LIKE 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IL1RAPL1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: FREESTYLE 293-F KEYWDS SYNAPSE ORGANIZER, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMAGATA,S.FUKAI REVDAT 3 29-JUL-20 4YH6 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 05-FEB-20 4YH6 1 SOURCE REMARK REVDAT 1 06-MAY-15 4YH6 0 JRNL AUTH A.YAMAGATA,T.YOSHIDA,Y.SATO,S.GOTO-ITO,T.UEMURA,A.MAEDA, JRNL AUTH 2 T.SHIROSHIMA,S.IWASAWA-OKAMOTO,H.MORI,M.MISHINA,S.FUKAI JRNL TITL MECHANISMS OF SPLICING-DEPENDENT TRANS-SYNAPTIC ADHESION BY JRNL TITL 2 PTP DELTA-IL1RAPL1/IL-1RACP FOR SYNAPTIC DIFFERENTIATION. JRNL REF NAT COMMUN V. 6 6926 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25908590 JRNL DOI 10.1038/NCOMMS7926 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.510 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 23998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8527 - 6.2337 0.99 2784 134 0.2670 0.2895 REMARK 3 2 6.2337 - 4.9506 0.99 2613 142 0.2345 0.2605 REMARK 3 3 4.9506 - 4.3256 0.99 2552 140 0.1876 0.2314 REMARK 3 4 4.3256 - 3.9305 0.99 2542 144 0.2148 0.2615 REMARK 3 5 3.9305 - 3.6489 0.98 2497 131 0.2562 0.3023 REMARK 3 6 3.6489 - 3.4339 0.98 2502 133 0.2803 0.3162 REMARK 3 7 3.4339 - 3.2620 0.97 2442 150 0.3097 0.3390 REMARK 3 8 3.2620 - 3.1201 0.96 2432 126 0.3538 0.4019 REMARK 3 9 3.1201 - 3.0000 0.95 2424 110 0.3842 0.4259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.610 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5424 REMARK 3 ANGLE : 0.891 7349 REMARK 3 CHIRALITY : 0.041 880 REMARK 3 PLANARITY : 0.003 877 REMARK 3 DIHEDRAL : 17.453 2077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8786 -3.5282 49.6783 REMARK 3 T TENSOR REMARK 3 T11: 0.4283 T22: 0.3226 REMARK 3 T33: 0.3809 T12: -0.0005 REMARK 3 T13: -0.0348 T23: 0.0815 REMARK 3 L TENSOR REMARK 3 L11: 4.7294 L22: 2.4917 REMARK 3 L33: 4.4919 L12: 0.9868 REMARK 3 L13: 3.2421 L23: 2.4127 REMARK 3 S TENSOR REMARK 3 S11: 0.4004 S12: -0.1433 S13: -0.1256 REMARK 3 S21: 0.5219 S22: -0.3252 S23: -0.2537 REMARK 3 S31: 0.3664 S32: -0.2531 S33: -0.1121 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2140 -12.1943 25.0477 REMARK 3 T TENSOR REMARK 3 T11: 0.7191 T22: 1.0023 REMARK 3 T33: 0.7041 T12: -0.3183 REMARK 3 T13: -0.2146 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 2.1544 L22: 2.2472 REMARK 3 L33: 2.3785 L12: -0.3839 REMARK 3 L13: 0.3325 L23: -0.0924 REMARK 3 S TENSOR REMARK 3 S11: 0.4405 S12: -0.0694 S13: -0.5302 REMARK 3 S21: 0.0269 S22: -0.2571 S23: -0.0331 REMARK 3 S31: 0.7613 S32: -1.1068 S33: -0.1685 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9433 8.7150 -5.0368 REMARK 3 T TENSOR REMARK 3 T11: 0.5166 T22: 0.9068 REMARK 3 T33: 0.3631 T12: 0.0718 REMARK 3 T13: 0.0338 T23: -0.0933 REMARK 3 L TENSOR REMARK 3 L11: 2.0327 L22: 4.8498 REMARK 3 L33: 3.0914 L12: 0.9928 REMARK 3 L13: -1.3103 L23: -2.1624 REMARK 3 S TENSOR REMARK 3 S11: -0.1493 S12: -0.3133 S13: 0.3175 REMARK 3 S21: -0.3860 S22: 0.2052 S23: 0.3777 REMARK 3 S31: 0.0504 S32: -0.1320 S33: -0.0213 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1129 12.7719 21.7227 REMARK 3 T TENSOR REMARK 3 T11: 0.5347 T22: 0.8102 REMARK 3 T33: 0.7769 T12: 0.0103 REMARK 3 T13: 0.1905 T23: -0.1022 REMARK 3 L TENSOR REMARK 3 L11: 3.7973 L22: 1.5282 REMARK 3 L33: 1.8725 L12: -0.1489 REMARK 3 L13: -2.2712 L23: 0.8165 REMARK 3 S TENSOR REMARK 3 S11: -0.0814 S12: -0.2067 S13: 0.0157 REMARK 3 S21: -0.1990 S22: 0.4643 S23: -1.5048 REMARK 3 S31: 0.4506 S32: 0.9802 S33: 0.3848 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2415 19.7185 32.2998 REMARK 3 T TENSOR REMARK 3 T11: 0.4213 T22: 0.1988 REMARK 3 T33: 0.3537 T12: 0.0988 REMARK 3 T13: 0.0982 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.4004 L22: 2.2468 REMARK 3 L33: 4.9655 L12: 0.1625 REMARK 3 L13: 0.0982 L23: 2.3907 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: 0.1100 S13: -0.0351 REMARK 3 S21: -0.4950 S22: -0.0277 S23: -0.2926 REMARK 3 S31: -0.3025 S32: -0.2154 S33: 0.0343 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 235 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1590 -3.4635 72.9109 REMARK 3 T TENSOR REMARK 3 T11: 0.2157 T22: 0.2210 REMARK 3 T33: 0.2148 T12: -0.1550 REMARK 3 T13: 0.0084 T23: -0.0543 REMARK 3 L TENSOR REMARK 3 L11: 2.2514 L22: 2.8145 REMARK 3 L33: 2.7679 L12: -0.0277 REMARK 3 L13: 0.3047 L23: -1.8689 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: -0.1511 S13: 0.0549 REMARK 3 S21: 0.2003 S22: 0.1385 S23: 0.3336 REMARK 3 S31: 0.2086 S32: -0.4834 S33: 0.0257 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23998 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12100 REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0-2.4 M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.22700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.22700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.35600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.22700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.22700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.35600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.22700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.22700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.35600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.22700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.22700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.35600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 12 REMARK 465 GLN A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 ASP A 18 REMARK 465 LEU A 19 REMARK 465 LYS A 20 REMARK 465 VAL A 21 REMARK 465 VAL A 22 REMARK 465 THR A 23 REMARK 465 LYS A 24 REMARK 465 ARG A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 ASP A 29 REMARK 465 GLY A 30 REMARK 465 LEU A 172 REMARK 465 PRO A 173 REMARK 465 THR A 174 REMARK 465 ARG A 175 REMARK 465 GLU A 176 REMARK 465 PRO A 177 REMARK 465 GLY A 275 REMARK 465 ASP A 276 REMARK 465 ARG A 352 REMARK 465 LYS A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 ALA B 12 REMARK 465 GLN B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 ARG B 17 REMARK 465 ASP B 18 REMARK 465 LEU B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 VAL B 22 REMARK 465 THR B 23 REMARK 465 LYS B 24 REMARK 465 ARG B 25 REMARK 465 GLY B 26 REMARK 465 SER B 27 REMARK 465 ALA B 28 REMARK 465 ASP B 29 REMARK 465 GLY B 30 REMARK 465 SER B 35 REMARK 465 VAL B 36 REMARK 465 PHE B 56 REMARK 465 TYR B 57 REMARK 465 GLY B 58 REMARK 465 TYR B 59 REMARK 465 ILE B 60 REMARK 465 ARG B 61 REMARK 465 THR B 62 REMARK 465 ASN B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ARG B 175 REMARK 465 GLU B 176 REMARK 465 GLY B 275 REMARK 465 ASP B 276 REMARK 465 ARG B 352 REMARK 465 LYS B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 31 CB CYS A 126 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 64.85 61.08 REMARK 500 PHE A 91 -74.99 -57.32 REMARK 500 GLU A 100 -120.35 55.79 REMARK 500 THR A 140 73.00 52.58 REMARK 500 ASP A 169 -3.69 70.42 REMARK 500 ARG A 198 115.59 -26.74 REMARK 500 ASP A 239 -1.18 68.70 REMARK 500 LEU A 252 72.72 53.21 REMARK 500 ASP A 294 42.89 35.81 REMARK 500 SER B 80 -1.77 72.43 REMARK 500 GLU B 86 64.87 60.49 REMARK 500 ARG B 95 -60.05 -99.66 REMARK 500 GLU B 100 -121.90 56.75 REMARK 500 THR B 140 75.38 54.47 REMARK 500 ARG B 198 73.93 28.42 REMARK 500 LEU B 252 73.17 54.94 REMARK 500 ASP B 294 74.15 36.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YH7 RELATED DB: PDB DBREF 4YH6 A 19 352 UNP P59823 IRPL1_MOUSE 19 352 DBREF 4YH6 B 19 352 UNP P59823 IRPL1_MOUSE 19 352 SEQADV 4YH6 ALA A 12 UNP P59823 EXPRESSION TAG SEQADV 4YH6 GLN A 13 UNP P59823 EXPRESSION TAG SEQADV 4YH6 PRO A 14 UNP P59823 EXPRESSION TAG SEQADV 4YH6 ALA A 15 UNP P59823 EXPRESSION TAG SEQADV 4YH6 ALA A 16 UNP P59823 EXPRESSION TAG SEQADV 4YH6 ARG A 17 UNP P59823 EXPRESSION TAG SEQADV 4YH6 ASP A 18 UNP P59823 EXPRESSION TAG SEQADV 4YH6 LYS A 353 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS A 354 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS A 355 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS A 356 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS A 357 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS A 358 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS A 359 UNP P59823 EXPRESSION TAG SEQADV 4YH6 ALA B 12 UNP P59823 EXPRESSION TAG SEQADV 4YH6 GLN B 13 UNP P59823 EXPRESSION TAG SEQADV 4YH6 PRO B 14 UNP P59823 EXPRESSION TAG SEQADV 4YH6 ALA B 15 UNP P59823 EXPRESSION TAG SEQADV 4YH6 ALA B 16 UNP P59823 EXPRESSION TAG SEQADV 4YH6 ARG B 17 UNP P59823 EXPRESSION TAG SEQADV 4YH6 ASP B 18 UNP P59823 EXPRESSION TAG SEQADV 4YH6 LYS B 353 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS B 354 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS B 355 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS B 356 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS B 357 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS B 358 UNP P59823 EXPRESSION TAG SEQADV 4YH6 HIS B 359 UNP P59823 EXPRESSION TAG SEQRES 1 A 348 ALA GLN PRO ALA ALA ARG ASP LEU LYS VAL VAL THR LYS SEQRES 2 A 348 ARG GLY SER ALA ASP GLY CYS THR ASP TRP SER VAL ASP SEQRES 3 A 348 ILE LYS LYS TYR GLN VAL LEU VAL GLY GLU PRO VAL ARG SEQRES 4 A 348 ILE LYS CYS ALA LEU PHE TYR GLY TYR ILE ARG THR ASN SEQRES 5 A 348 TYR SER LEU ALA GLN SER ALA GLY LEU SER LEU MET TRP SEQRES 6 A 348 TYR LYS SER SER GLY PRO GLY ASP PHE GLU GLU PRO ILE SEQRES 7 A 348 ALA PHE ASP GLY SER ARG MET SER LYS GLU GLU ASP SER SEQRES 8 A 348 ILE TRP PHE ARG PRO THR LEU LEU GLN ASP SER GLY LEU SEQRES 9 A 348 TYR ALA CYS VAL ILE ARG ASN SER THR TYR CYS MET LYS SEQRES 10 A 348 VAL SER ILE SER LEU THR VAL GLY GLU ASN ASP THR GLY SEQRES 11 A 348 LEU CYS TYR ASN SER LYS MET LYS TYR PHE GLU LYS ALA SEQRES 12 A 348 GLU LEU SER LYS SER LYS GLU ILE SER CYS ARG ASP ILE SEQRES 13 A 348 GLU ASP PHE LEU LEU PRO THR ARG GLU PRO GLU ILE LEU SEQRES 14 A 348 TRP TYR LYS GLU CYS ARG THR LYS ALA TRP ARG PRO SER SEQRES 15 A 348 ILE VAL PHE LYS ARG ASP THR LEU LEU ILE LYS GLU VAL SEQRES 16 A 348 LYS GLU ASP ASP ILE GLY ASN TYR THR CYS GLU LEU LYS SEQRES 17 A 348 TYR GLY GLY PHE VAL VAL ARG ARG THR THR GLU LEU THR SEQRES 18 A 348 VAL THR ALA PRO LEU THR ASP LYS PRO PRO LYS LEU LEU SEQRES 19 A 348 TYR PRO MET GLU SER LYS LEU THR VAL GLN GLU THR GLN SEQRES 20 A 348 LEU GLY GLY SER ALA ASN LEU THR CYS ARG ALA PHE PHE SEQRES 21 A 348 GLY TYR SER GLY ASP VAL SER PRO LEU ILE TYR TRP MET SEQRES 22 A 348 LYS GLY GLU LYS PHE ILE GLU ASP LEU ASP GLU ASN ARG SEQRES 23 A 348 VAL TRP GLU SER ASP ILE ARG ILE LEU LYS GLU HIS LEU SEQRES 24 A 348 GLY GLU GLN GLU VAL SER ILE SER LEU ILE VAL ASP SER SEQRES 25 A 348 VAL GLU GLU GLY ASP LEU GLY ASN TYR SER CYS TYR VAL SEQRES 26 A 348 GLU ASN GLY ASN GLY ARG ARG HIS ALA SER VAL LEU LEU SEQRES 27 A 348 HIS LYS ARG LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 348 ALA GLN PRO ALA ALA ARG ASP LEU LYS VAL VAL THR LYS SEQRES 2 B 348 ARG GLY SER ALA ASP GLY CYS THR ASP TRP SER VAL ASP SEQRES 3 B 348 ILE LYS LYS TYR GLN VAL LEU VAL GLY GLU PRO VAL ARG SEQRES 4 B 348 ILE LYS CYS ALA LEU PHE TYR GLY TYR ILE ARG THR ASN SEQRES 5 B 348 TYR SER LEU ALA GLN SER ALA GLY LEU SER LEU MET TRP SEQRES 6 B 348 TYR LYS SER SER GLY PRO GLY ASP PHE GLU GLU PRO ILE SEQRES 7 B 348 ALA PHE ASP GLY SER ARG MET SER LYS GLU GLU ASP SER SEQRES 8 B 348 ILE TRP PHE ARG PRO THR LEU LEU GLN ASP SER GLY LEU SEQRES 9 B 348 TYR ALA CYS VAL ILE ARG ASN SER THR TYR CYS MET LYS SEQRES 10 B 348 VAL SER ILE SER LEU THR VAL GLY GLU ASN ASP THR GLY SEQRES 11 B 348 LEU CYS TYR ASN SER LYS MET LYS TYR PHE GLU LYS ALA SEQRES 12 B 348 GLU LEU SER LYS SER LYS GLU ILE SER CYS ARG ASP ILE SEQRES 13 B 348 GLU ASP PHE LEU LEU PRO THR ARG GLU PRO GLU ILE LEU SEQRES 14 B 348 TRP TYR LYS GLU CYS ARG THR LYS ALA TRP ARG PRO SER SEQRES 15 B 348 ILE VAL PHE LYS ARG ASP THR LEU LEU ILE LYS GLU VAL SEQRES 16 B 348 LYS GLU ASP ASP ILE GLY ASN TYR THR CYS GLU LEU LYS SEQRES 17 B 348 TYR GLY GLY PHE VAL VAL ARG ARG THR THR GLU LEU THR SEQRES 18 B 348 VAL THR ALA PRO LEU THR ASP LYS PRO PRO LYS LEU LEU SEQRES 19 B 348 TYR PRO MET GLU SER LYS LEU THR VAL GLN GLU THR GLN SEQRES 20 B 348 LEU GLY GLY SER ALA ASN LEU THR CYS ARG ALA PHE PHE SEQRES 21 B 348 GLY TYR SER GLY ASP VAL SER PRO LEU ILE TYR TRP MET SEQRES 22 B 348 LYS GLY GLU LYS PHE ILE GLU ASP LEU ASP GLU ASN ARG SEQRES 23 B 348 VAL TRP GLU SER ASP ILE ARG ILE LEU LYS GLU HIS LEU SEQRES 24 B 348 GLY GLU GLN GLU VAL SER ILE SER LEU ILE VAL ASP SER SEQRES 25 B 348 VAL GLU GLU GLY ASP LEU GLY ASN TYR SER CYS TYR VAL SEQRES 26 B 348 GLU ASN GLY ASN GLY ARG ARG HIS ALA SER VAL LEU LEU SEQRES 27 B 348 HIS LYS ARG LYS HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET MAN G 4 11 HET MAN G 5 11 HET NAG H 1 14 HET NAG H 2 14 HET BMA H 3 11 HET MAN H 4 11 HET NAG A 404 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE FORMUL 3 NAG 13(C8 H15 N O6) FORMUL 3 BMA 6(C6 H12 O6) FORMUL 4 MAN 7(C6 H12 O6) HELIX 1 AA1 CYS A 53 GLY A 58 1 6 HELIX 2 AA2 ASN A 63 GLN A 68 1 6 HELIX 3 AA3 SER A 69 GLY A 71 5 3 HELIX 4 AA4 LEU A 109 SER A 113 5 5 HELIX 5 AA5 ILE A 290 ASP A 294 1 5 HELIX 6 AA6 LEU B 109 SER B 113 5 5 HELIX 7 AA7 ILE B 167 LEU B 171 5 5 SHEET 1 AA1 3 THR A 32 TRP A 34 0 SHEET 2 AA1 3 CYS A 126 GLY A 136 1 O LYS A 128 N TRP A 34 SHEET 3 AA1 3 LYS A 40 LEU A 44 1 N TYR A 41 O THR A 134 SHEET 1 AA2 5 THR A 32 TRP A 34 0 SHEET 2 AA2 5 CYS A 126 GLY A 136 1 O LYS A 128 N TRP A 34 SHEET 3 AA2 5 GLY A 114 ARG A 121 -1 N TYR A 116 O ILE A 131 SHEET 4 AA2 5 SER A 73 LYS A 78 -1 N MET A 75 O VAL A 119 SHEET 5 AA2 5 GLU A 87 PRO A 88 -1 O GLU A 87 N LYS A 78 SHEET 1 AA3 3 VAL A 49 LYS A 52 0 SHEET 2 AA3 3 SER A 102 PHE A 105 -1 O PHE A 105 N VAL A 49 SHEET 3 AA3 3 MET A 96 GLU A 99 -1 N GLU A 99 O SER A 102 SHEET 1 AA4 4 TYR A 150 GLU A 155 0 SHEET 2 AA4 4 VAL A 224 THR A 234 1 O THR A 228 N TYR A 150 SHEET 3 AA4 4 GLY A 212 LYS A 219 -1 N TYR A 214 O THR A 229 SHEET 4 AA4 4 LEU A 180 LYS A 183 -1 N LEU A 180 O GLU A 217 SHEET 1 AA5 3 LYS A 160 SER A 163 0 SHEET 2 AA5 3 THR A 200 ILE A 203 -1 O LEU A 201 N ILE A 162 SHEET 3 AA5 3 ILE A 194 LYS A 197 -1 N LYS A 197 O THR A 200 SHEET 1 AA6 4 LYS A 243 TYR A 246 0 SHEET 2 AA6 4 ALA A 263 PHE A 270 -1 O ARG A 268 N TYR A 246 SHEET 3 AA6 4 GLU A 312 VAL A 321 -1 O LEU A 319 N LEU A 265 SHEET 4 AA6 4 VAL A 298 GLU A 300 -1 N TRP A 299 O ILE A 320 SHEET 1 AA7 4 LYS A 243 TYR A 246 0 SHEET 2 AA7 4 ALA A 263 PHE A 270 -1 O ARG A 268 N TYR A 246 SHEET 3 AA7 4 GLU A 312 VAL A 321 -1 O LEU A 319 N LEU A 265 SHEET 4 AA7 4 ARG A 304 HIS A 309 -1 N ARG A 304 O SER A 316 SHEET 1 AA8 5 THR A 253 GLU A 256 0 SHEET 2 AA8 5 ARG A 342 HIS A 350 1 O LEU A 348 N GLN A 255 SHEET 3 AA8 5 ASN A 331 GLU A 337 -1 N TYR A 332 O VAL A 347 SHEET 4 AA8 5 LEU A 280 LYS A 285 -1 N MET A 284 O SER A 333 SHEET 5 AA8 5 LYS A 288 PHE A 289 -1 O LYS A 288 N LYS A 285 SHEET 1 AA9 5 LYS B 40 LEU B 44 0 SHEET 2 AA9 5 CYS B 126 GLY B 136 1 O THR B 134 N TYR B 41 SHEET 3 AA9 5 GLY B 114 ARG B 121 -1 N TYR B 116 O ILE B 131 SHEET 4 AA9 5 SER B 73 LYS B 78 -1 N MET B 75 O VAL B 119 SHEET 5 AA9 5 GLU B 87 PRO B 88 -1 O GLU B 87 N LYS B 78 SHEET 1 AB1 3 VAL B 49 LYS B 52 0 SHEET 2 AB1 3 SER B 102 PHE B 105 -1 O ILE B 103 N ILE B 51 SHEET 3 AB1 3 MET B 96 GLU B 99 -1 N GLU B 99 O SER B 102 SHEET 1 AB2 4 TYR B 150 GLU B 155 0 SHEET 2 AB2 4 VAL B 224 THR B 234 1 O THR B 228 N TYR B 150 SHEET 3 AB2 4 GLY B 212 LYS B 219 -1 N TYR B 214 O THR B 229 SHEET 4 AB2 4 ILE B 179 LYS B 183 -1 N LEU B 180 O GLU B 217 SHEET 1 AB3 3 LYS B 160 SER B 163 0 SHEET 2 AB3 3 THR B 200 ILE B 203 -1 O LEU B 201 N ILE B 162 SHEET 3 AB3 3 ILE B 194 LYS B 197 -1 N VAL B 195 O LEU B 202 SHEET 1 AB4 4 LYS B 243 TYR B 246 0 SHEET 2 AB4 4 ALA B 263 PHE B 270 -1 O ARG B 268 N LEU B 245 SHEET 3 AB4 4 GLU B 312 VAL B 321 -1 O LEU B 319 N LEU B 265 SHEET 4 AB4 4 VAL B 298 GLU B 300 -1 N TRP B 299 O ILE B 320 SHEET 1 AB5 4 LYS B 243 TYR B 246 0 SHEET 2 AB5 4 ALA B 263 PHE B 270 -1 O ARG B 268 N LEU B 245 SHEET 3 AB5 4 GLU B 312 VAL B 321 -1 O LEU B 319 N LEU B 265 SHEET 4 AB5 4 ARG B 304 HIS B 309 -1 N ARG B 304 O SER B 316 SHEET 1 AB6 5 THR B 253 GLU B 256 0 SHEET 2 AB6 5 ARG B 342 HIS B 350 1 O LEU B 348 N GLN B 255 SHEET 3 AB6 5 ASN B 331 GLU B 337 -1 N TYR B 332 O VAL B 347 SHEET 4 AB6 5 LEU B 280 LYS B 285 -1 N TYR B 282 O TYR B 335 SHEET 5 AB6 5 LYS B 288 PHE B 289 -1 O LYS B 288 N LYS B 285 SSBOND 1 CYS A 31 CYS A 126 1555 1555 2.03 SSBOND 2 CYS A 53 CYS A 118 1555 1555 2.03 SSBOND 3 CYS A 143 CYS A 185 1555 1555 2.03 SSBOND 4 CYS A 164 CYS A 216 1555 1555 2.03 SSBOND 5 CYS A 267 CYS A 334 1555 1555 2.03 SSBOND 6 CYS B 31 CYS B 126 1555 1555 2.03 SSBOND 7 CYS B 53 CYS B 118 1555 1555 2.03 SSBOND 8 CYS B 143 CYS B 185 1555 1555 2.04 SSBOND 9 CYS B 164 CYS B 216 1555 1555 2.03 SSBOND 10 CYS B 267 CYS B 334 1555 1555 2.03 LINK ND2 ASN A 122 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 138 C1 NAG A 404 1555 1555 1.44 LINK ND2 ASN A 213 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 264 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 138 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 213 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN B 264 C1 NAG H 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.46 LINK O6 BMA E 3 C1 MAN E 5 1555 1555 1.46 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.43 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.45 LINK O3 BMA G 3 C1 MAN G 4 1555 1555 1.44 LINK O6 BMA G 3 C1 MAN G 5 1555 1555 1.44 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 LINK O4 NAG H 2 C1 BMA H 3 1555 1555 1.44 LINK O3 BMA H 3 C1 MAN H 4 1555 1555 1.45 CISPEP 1 ARG A 106 PRO A 107 0 -5.30 CISPEP 2 TYR A 246 PRO A 247 0 -6.30 CISPEP 3 ARG B 106 PRO B 107 0 -7.09 CISPEP 4 LEU B 172 PRO B 173 0 1.72 CISPEP 5 TYR B 246 PRO B 247 0 -4.88 CRYST1 102.454 102.454 222.712 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004490 0.00000