HEADER TRANSFERASE/TRANSFERASE INHIBITOR 27-FEB-15 4YHT TITLE BRAF COMPLEXED WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 449-720; COMPND 5 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 6 HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469 KEYWDS KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.M.SHEWCHUK,B.G.LAWHORN REVDAT 4 28-FEB-24 4YHT 1 JRNL REMARK REVDAT 3 22-JUN-16 4YHT 1 JRNL REVDAT 2 15-JUN-16 4YHT 1 JRNL REVDAT 1 16-MAR-16 4YHT 0 JRNL AUTH B.G.LAWHORN,J.PHILP,A.P.GRAVES,L.SHEWCHUK,D.A.HOLT, JRNL AUTH 2 G.J.GATTO,L.S.KALLANDER JRNL TITL GSK114: A SELECTIVE INHIBITOR FOR ELUCIDATING THE BIOLOGICAL JRNL TITL 2 ROLE OF TNNI3K. JRNL REF BIOORG.MED.CHEM.LETT. V. 26 3355 2016 JRNL REFN ESSN 1464-3405 JRNL PMID 27246618 JRNL DOI 10.1016/J.BMCL.2016.05.033 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 15207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4052 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.55000 REMARK 3 B22 (A**2) : -0.55000 REMARK 3 B33 (A**2) : 1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.381 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.849 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4210 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5693 ; 1.173 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 5.483 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;36.064 ;24.033 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;15.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;22.323 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 630 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3173 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2050 ; 1.616 ; 2.414 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2552 ; 2.814 ; 3.604 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2160 ; 1.733 ; 2.458 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 448 A 626 2 REMARK 3 1 B 448 B 626 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 638 ; 0.030 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 664 ; 3.510 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 638 ; 4.080 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 626 A 630 2 REMARK 3 1 B 626 B 630 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 13 ; 0.030 ; 0.500 REMARK 3 TIGHT THERMAL 2 A (A**2): 12 ; 1.950 ; 0.500 REMARK 3 MEDIUM THERMAL 2 A (A**2): 13 ; 1.320 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 631 A 661 2 REMARK 3 1 B 631 B 661 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 130 ; 0.040 ; 0.500 REMARK 3 TIGHT THERMAL 3 A (A**2): 124 ; 1.410 ; 0.500 REMARK 3 MEDIUM THERMAL 3 A (A**2): 130 ; 2.090 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 663 A 719 2 REMARK 3 1 B 663 B 719 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 210 ; 0.040 ; 0.500 REMARK 3 TIGHT THERMAL 4 A (A**2): 224 ; 1.790 ; 0.500 REMARK 3 MEDIUM THERMAL 4 A (A**2): 210 ; 2.900 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2001 A 2001 1 REMARK 3 1 B 2001 B 2001 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 5 A (A**2): 28 ; 3.290 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 448 A 2001 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4230 -22.8490 -28.2970 REMARK 3 T TENSOR REMARK 3 T11: 0.2449 T22: 0.3368 REMARK 3 T33: 0.0456 T12: -0.0225 REMARK 3 T13: -0.0172 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 1.2585 L22: 2.4152 REMARK 3 L33: 2.2727 L12: 1.2105 REMARK 3 L13: 0.7533 L23: 1.6206 REMARK 3 S TENSOR REMARK 3 S11: -0.1258 S12: 0.1742 S13: 0.0210 REMARK 3 S21: -0.0743 S22: 0.1412 S23: -0.1669 REMARK 3 S31: -0.0922 S32: 0.0287 S33: -0.0154 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 448 B 2001 REMARK 3 ORIGIN FOR THE GROUP (A): -32.4730 -43.1870 -44.0400 REMARK 3 T TENSOR REMARK 3 T11: 0.2994 T22: 0.3363 REMARK 3 T33: 0.0229 T12: -0.0320 REMARK 3 T13: -0.0005 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 1.7709 L22: 0.7653 REMARK 3 L33: 2.0023 L12: 0.7466 REMARK 3 L13: 1.4912 L23: 0.2785 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: 0.0189 S13: -0.0892 REMARK 3 S21: -0.0439 S22: 0.1175 S23: -0.0121 REMARK 3 S31: -0.0644 S32: 0.0418 S33: -0.0780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4YHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16082 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.0, 650 MM NACL, 3-6 % REMARK 280 PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.75200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.89150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.89150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.37600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.89150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.89150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.12800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.89150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.89150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.37600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.89150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.89150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 121.12800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.75200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 601 REMARK 465 ARG A 602 REMARK 465 TRP A 603 REMARK 465 SER A 604 REMARK 465 GLY A 605 REMARK 465 SER A 606 REMARK 465 HIS A 607 REMARK 465 GLN A 608 REMARK 465 PHE A 609 REMARK 465 GLU A 610 REMARK 465 GLN A 611 REMARK 465 LEU A 612 REMARK 465 SER A 613 REMARK 465 LYS A 629 REMARK 465 ASN A 630 REMARK 465 SER A 719 REMARK 465 ARG B 602 REMARK 465 TRP B 603 REMARK 465 SER B 604 REMARK 465 GLY B 605 REMARK 465 SER B 606 REMARK 465 HIS B 607 REMARK 465 GLN B 608 REMARK 465 PHE B 609 REMARK 465 GLU B 610 REMARK 465 GLN B 611 REMARK 465 LEU B 612 REMARK 465 SER B 613 REMARK 465 LYS B 629 REMARK 465 ASN B 630 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 521 CG CD CE NZ REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 LYS A 551 CD CE NZ REMARK 470 ARG A 670 NE CZ NH1 NH2 REMARK 470 LYS A 686 CD CE NZ REMARK 470 ARG A 718 CD NE CZ NH1 NH2 REMARK 470 LYS B 521 CG CD CE NZ REMARK 470 LYS B 546 CG CD CE NZ REMARK 470 LYS B 551 CD CE NZ REMARK 470 LYS B 600 CG CD CE NZ REMARK 470 SER B 601 OG REMARK 470 ARG B 718 CG CD NE CZ NH1 NH2 REMARK 470 SER B 719 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 461 NH1 - CZ - NH2 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 461 NE - CZ - NH2 ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 475 101.08 -161.24 REMARK 500 ASP A 575 31.31 -152.63 REMARK 500 ASP A 586 -9.86 63.91 REMARK 500 LEU A 587 -62.42 -99.83 REMARK 500 ASP A 593 88.64 59.89 REMARK 500 MET A 626 17.50 59.13 REMARK 500 ASP B 575 30.08 -151.87 REMARK 500 ASP B 586 -10.87 62.17 REMARK 500 LEU B 587 -60.48 -99.12 REMARK 500 ASP B 593 90.89 54.11 REMARK 500 MET B 626 16.99 56.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4EF A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4EF B 802 DBREF 4YHT A 448 719 UNP P15056 BRAF_HUMAN 449 720 DBREF 4YHT B 448 719 UNP P15056 BRAF_HUMAN 449 720 SEQADV 4YHT THR A 542 UNP P15056 ILE 543 ENGINEERED MUTATION SEQADV 4YHT ASN A 543 UNP P15056 ILE 544 ENGINEERED MUTATION SEQADV 4YHT THR A 550 UNP P15056 ILE 551 ENGINEERED MUTATION SEQADV 4YHT THR A 705 UNP P15056 LEU 706 ENGINEERED MUTATION SEQADV 4YHT THR A 715 UNP P15056 LEU 716 ENGINEERED MUTATION SEQADV 4YHT THR B 542 UNP P15056 ILE 543 ENGINEERED MUTATION SEQADV 4YHT ASN B 543 UNP P15056 ILE 544 ENGINEERED MUTATION SEQADV 4YHT THR B 550 UNP P15056 ILE 551 ENGINEERED MUTATION SEQADV 4YHT THR B 705 UNP P15056 LEU 706 ENGINEERED MUTATION SEQADV 4YHT THR B 715 UNP P15056 LEU 716 ENGINEERED MUTATION SEQRES 1 A 272 ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY GLN SEQRES 2 A 272 ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS GLY SEQRES 3 A 272 LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN VAL SEQRES 4 A 272 THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS ASN SEQRES 5 A 272 GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN ILE SEQRES 6 A 272 LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU ALA SEQRES 7 A 272 ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR HIS SEQRES 8 A 272 HIS LEU HIS THR ASN GLU THR LYS PHE GLU MET THR LYS SEQRES 9 A 272 LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY MET ASP SEQRES 10 A 272 TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU LYS SEQRES 11 A 272 SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR VAL LYS SEQRES 12 A 272 ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SER ARG TRP SEQRES 13 A 272 SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER ILE SEQRES 14 A 272 LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP LYS SEQRES 15 A 272 ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE GLY SEQRES 16 A 272 ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO TYR SEQRES 17 A 272 SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE MET VAL SEQRES 18 A 272 GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS VAL ARG SEQRES 19 A 272 SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET ALA GLU SEQRES 20 A 272 CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO THR PHE PRO SEQRES 21 A 272 GLN ILE LEU ALA SER ILE GLU THR LEU ALA ARG SER SEQRES 1 B 272 ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL GLY GLN SEQRES 2 B 272 ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR LYS GLY SEQRES 3 B 272 LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU ASN VAL SEQRES 4 B 272 THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE LYS ASN SEQRES 5 B 272 GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL ASN ILE SEQRES 6 B 272 LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN LEU ALA SEQRES 7 B 272 ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU TYR HIS SEQRES 8 B 272 HIS LEU HIS THR ASN GLU THR LYS PHE GLU MET THR LYS SEQRES 9 B 272 LEU ILE ASP ILE ALA ARG GLN THR ALA GLN GLY MET ASP SEQRES 10 B 272 TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP LEU LYS SEQRES 11 B 272 SER ASN ASN ILE PHE LEU HIS GLU ASP LEU THR VAL LYS SEQRES 12 B 272 ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SER ARG TRP SEQRES 13 B 272 SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SER ILE SEQRES 14 B 272 LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN ASP LYS SEQRES 15 B 272 ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA PHE GLY SEQRES 16 B 272 ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU PRO TYR SEQRES 17 B 272 SER ASN ILE ASN ASN ARG ASP GLN ILE ILE PHE MET VAL SEQRES 18 B 272 GLY ARG GLY TYR LEU SER PRO ASP LEU SER LYS VAL ARG SEQRES 19 B 272 SER ASN CYS PRO LYS ALA MET LYS ARG LEU MET ALA GLU SEQRES 20 B 272 CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO THR PHE PRO SEQRES 21 B 272 GLN ILE LEU ALA SER ILE GLU THR LEU ALA ARG SER HET GOL A1001 6 HET 4EF A1002 28 HET GOL B 801 6 HET 4EF B 802 28 HETNAM GOL GLYCEROL HETNAM 4EF 3-[(5-CHLORO-7H-PYRROLO[2,3-D]PYRIMIDIN-4-YL)AMINO]-N- HETNAM 2 4EF METHYL-4-(MORPHOLIN-4-YL)BENZENESULFONAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 4EF 2(C17 H19 CL N6 O3 S) FORMUL 7 HOH *72(H2 O) HELIX 1 AA1 THR A 490 ARG A 505 1 16 HELIX 2 AA2 SER A 535 THR A 542 1 8 HELIX 3 AA3 GLU A 548 LYS A 569 1 22 HELIX 4 AA4 LYS A 577 ASN A 579 5 3 HELIX 5 AA5 GLU A 585 LEU A 587 5 3 HELIX 6 AA6 SER A 615 MET A 619 5 5 HELIX 7 AA7 ALA A 620 MET A 626 1 7 HELIX 8 AA8 SER A 633 GLY A 651 1 19 HELIX 9 AA9 ASN A 660 GLY A 671 1 12 HELIX 10 AB1 ASP A 676 VAL A 680 5 5 HELIX 11 AB2 PRO A 685 LEU A 696 1 12 HELIX 12 AB3 LYS A 699 ARG A 703 5 5 HELIX 13 AB4 THR A 705 THR A 715 1 11 HELIX 14 AB5 THR B 490 ARG B 505 1 16 HELIX 15 AB6 SER B 535 THR B 542 1 8 HELIX 16 AB7 GLU B 548 LYS B 569 1 22 HELIX 17 AB8 LYS B 577 ASN B 579 5 3 HELIX 18 AB9 GLU B 585 LEU B 587 5 3 HELIX 19 AC1 SER B 615 MET B 619 5 5 HELIX 20 AC2 ALA B 620 MET B 626 1 7 HELIX 21 AC3 SER B 633 GLY B 651 1 19 HELIX 22 AC4 ASN B 660 GLY B 671 1 12 HELIX 23 AC5 ASP B 676 VAL B 680 5 5 HELIX 24 AC6 PRO B 685 LEU B 696 1 12 HELIX 25 AC7 LYS B 699 ARG B 703 5 5 HELIX 26 AC8 THR B 705 THR B 715 1 11 SHEET 1 AA1 5 THR A 457 GLY A 465 0 SHEET 2 AA1 5 GLY A 468 LYS A 474 -1 O LYS A 472 N GLN A 460 SHEET 3 AA1 5 ASP A 478 MET A 483 -1 O VAL A 479 N GLY A 473 SHEET 4 AA1 5 ALA A 525 GLN A 529 -1 O THR A 528 N ALA A 480 SHEET 5 AA1 5 PHE A 515 SER A 519 -1 N GLY A 517 O VAL A 527 SHEET 1 AA2 2 ILE A 571 ILE A 572 0 SHEET 2 AA2 2 THR A 598 VAL A 599 -1 O THR A 598 N ILE A 572 SHEET 1 AA3 2 ILE A 581 HIS A 584 0 SHEET 2 AA3 2 THR A 588 ILE A 591 -1 O THR A 588 N HIS A 584 SHEET 1 AA4 5 THR B 457 GLY B 465 0 SHEET 2 AA4 5 GLY B 468 LYS B 474 -1 O LYS B 472 N GLN B 460 SHEET 3 AA4 5 ASP B 478 MET B 483 -1 O VAL B 479 N GLY B 473 SHEET 4 AA4 5 ALA B 525 GLN B 529 -1 O THR B 528 N ALA B 480 SHEET 5 AA4 5 PHE B 515 SER B 519 -1 N GLY B 517 O VAL B 527 SHEET 1 AA5 2 ILE B 571 ILE B 572 0 SHEET 2 AA5 2 THR B 598 VAL B 599 -1 O THR B 598 N ILE B 572 SHEET 1 AA6 2 ILE B 581 HIS B 584 0 SHEET 2 AA6 2 THR B 588 ILE B 591 -1 O THR B 588 N HIS B 584 CISPEP 1 LYS A 521 PRO A 522 0 5.77 CISPEP 2 LYS B 521 PRO B 522 0 5.39 SITE 1 AC1 4 ASN A 511 ARG A 557 GLN A 561 ASP B 478 SITE 1 AC2 15 ILE A 462 VAL A 470 ALA A 480 LYS A 482 SITE 2 AC2 15 LEU A 513 THR A 528 GLN A 529 TRP A 530 SITE 3 AC2 15 CYS A 531 GLY A 533 ASN A 579 PHE A 582 SITE 4 AC2 15 ASP A 593 HOH A1114 HOH A1124 SITE 1 AC3 4 SER B 674 PRO B 675 ALA B 693 LYS B 698 SITE 1 AC4 15 ILE B 462 SER B 464 VAL B 470 ALA B 480 SITE 2 AC4 15 LYS B 482 LEU B 513 THR B 528 GLN B 529 SITE 3 AC4 15 TRP B 530 CYS B 531 GLY B 533 ASN B 579 SITE 4 AC4 15 PHE B 582 ASP B 593 HOH B 912 CRYST1 99.783 99.783 161.504 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010022 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006192 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.078417 -0.994866 -0.063966 -57.77695 1 MTRIX2 2 -0.994774 0.073879 0.070467 -48.83678 1 MTRIX3 2 -0.065379 0.069157 -0.995461 -71.07220 1