HEADER HYDROLASE/DNA 27-FEB-15 4YHX TITLE CRYSTAL STRUCTURE OF LAGLIDADG MEGANUCLEASE I-GPEMI BOUND TO UNCLEAVED TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN 3/HOMING ENDONUCLEASE-LIKE FUSION COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 420-727; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (27-MER); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (27-MER); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GROSMANNIA PENICILLATA; SOURCE 3 ORGANISM_TAXID: 360150; SOURCE 4 GENE: RPS3/HEG FUSION; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE-DNA COMPLEX, LAGLIDADG, HOMING ENDONUCLEASE, MEGANUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.HALLINAN,B.K.KAISER,B.L.STODDARD REVDAT 7 27-SEP-23 4YHX 1 LINK REVDAT 6 25-DEC-19 4YHX 1 REMARK REVDAT 5 20-SEP-17 4YHX 1 JRNL REMARK REVDAT 4 15-JUN-16 4YHX 1 JRNL REVDAT 3 18-MAY-16 4YHX 1 JRNL REVDAT 2 30-MAR-16 4YHX 1 JRNL REVDAT 1 09-MAR-16 4YHX 0 JRNL AUTH A.R.LAMBERT,J.P.HALLINAN,B.W.SHEN,J.K.CHIK,J.M.BOLDUC, JRNL AUTH 2 N.KULSHINA,L.I.ROBINS,B.K.KAISER,J.JARJOUR,K.HAVENS, JRNL AUTH 3 A.M.SCHARENBERG,B.L.STODDARD JRNL TITL INDIRECT DNA SEQUENCE RECOGNITION AND ITS IMPACT ON NUCLEASE JRNL TITL 2 CLEAVAGE ACTIVITY. JRNL REF STRUCTURE V. 24 862 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27133026 JRNL DOI 10.1016/J.STR.2016.03.024 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 23084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1567 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2310 REMARK 3 NUCLEIC ACID ATOMS : 1101 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.86000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : 1.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.256 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.573 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3616 ; 0.013 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 2908 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5098 ; 1.627 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6724 ; 1.047 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 6.619 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;36.686 ;25.094 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;15.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.401 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3332 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 818 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1190 ; 2.606 ; 3.321 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1185 ; 2.591 ; 3.322 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1480 ; 3.757 ; 4.973 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4YHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24373 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG 3000, 50MM CACL2, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.99250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.94750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.99250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.94750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 VAL A 157 REMARK 465 ALA A 158 REMARK 465 SER A 159 REMARK 465 GLY A 160 REMARK 465 GLY A 161 REMARK 465 GLU A 162 REMARK 465 ARG A 163 REMARK 465 SER A 164 REMARK 465 LEU A 165 REMARK 465 ILE A 166 REMARK 465 LEU A 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 4 CG OD1 ND2 REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 ILE A 155 CG1 CG2 CD1 REMARK 470 ASN A 167 CG OD1 ND2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 511 O HOH A 614 1.82 REMARK 500 O HOH A 506 O HOH A 509 1.91 REMARK 500 O HOH A 591 O HOH A 598 2.00 REMARK 500 O HOH A 529 O HOH A 614 2.02 REMARK 500 O HOH B 107 O HOH B 143 2.02 REMARK 500 OG1 THR A 245 O HOH A 501 2.15 REMARK 500 OP2 DT B 11 O HOH B 101 2.16 REMARK 500 OP2 DT C 11 O HOH C 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 9 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DG C 9 C1' - O4' - C4' ANGL. DEV. = -7.4 DEGREES REMARK 500 DA C 16 P - O5' - C5' ANGL. DEV. = 10.6 DEGREES REMARK 500 DG C 18 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DG C 18 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C 19 O5' - P - OP2 ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 117 10.41 59.12 REMARK 500 LYS A 117 10.41 58.32 REMARK 500 ASN A 136 -118.34 45.52 REMARK 500 LYS A 194 39.47 -85.00 REMARK 500 SER A 235 -117.02 55.70 REMARK 500 ASN A 303 -120.34 64.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 18 O REMARK 620 2 GLU A 183 OE1 92.5 REMARK 620 3 HOH A 552 O 83.1 82.2 REMARK 620 4 DC B 15 OP1 176.2 84.3 94.4 REMARK 620 5 DA C 16 OP2 91.6 105.2 171.1 91.2 REMARK 620 6 HOH C 135 O 96.3 166.8 89.1 86.5 84.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 19 OE1 REMARK 620 2 GLU A 183 OE2 117.7 REMARK 620 3 DC B 15 O3' 151.2 88.3 REMARK 620 4 DA B 16 OP2 102.8 101.6 56.9 REMARK 620 5 DT C 15 O3' 65.9 158.2 94.9 98.2 REMARK 620 6 DA C 16 OP2 85.1 104.2 101.1 145.4 54.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 19 OE2 REMARK 620 2 GLY A 182 O 81.9 REMARK 620 3 HOH A 555 O 87.9 87.9 REMARK 620 4 DA B 16 OP2 99.3 85.6 169.5 REMARK 620 5 HOH B 145 O 170.1 92.6 83.7 88.4 REMARK 620 6 DT C 15 OP1 92.7 169.6 83.0 104.1 91.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 DBREF 4YHX A 1 308 UNP C7SQG1 C7SQG1_9PEZI 420 727 DBREF 4YHX B 1 27 PDB 4YHX 4YHX 1 27 DBREF 4YHX C 1 27 PDB 4YHX 4YHX 1 27 SEQADV 4YHX LYS A 51 UNP C7SQG1 ILE 470 ENGINEERED MUTATION SEQADV 4YHX GLU A 215 UNP C7SQG1 ALA 634 ENGINEERED MUTATION SEQADV 4YHX GLU A 260 UNP C7SQG1 VAL 679 ENGINEERED MUTATION SEQRES 1 A 308 PRO THR ARG ASN GLU SER ILE ASN PRO TRP VAL LEU THR SEQRES 2 A 308 GLY PHE ALA ASP ALA GLU GLY SER PHE ILE LEU ARG ILE SEQRES 3 A 308 ARG ASN ASN ASN LYS SER SER ALA GLY TYR SER THR GLU SEQRES 4 A 308 LEU GLY PHE GLN ILE THR LEU HIS LYS LYS ASP LYS SER SEQRES 5 A 308 ILE LEU GLU ASN ILE GLN SER THR TRP LYS VAL GLY VAL SEQRES 6 A 308 ILE ALA ASN SER GLY ASP ASN ALA VAL SER LEU LYS VAL SEQRES 7 A 308 THR ARG PHE GLU ASP LEU ARG VAL VAL LEU ASN HIS PHE SEQRES 8 A 308 GLU LYS TYR PRO LEU ILE THR GLN LYS LEU GLY ASP TYR SEQRES 9 A 308 LEU LEU PHE LYS GLN ALA PHE SER VAL MET GLU ASN LYS SEQRES 10 A 308 GLU HIS LEU LYS ILE GLU GLY ILE LYS ARG LEU VAL GLY SEQRES 11 A 308 ILE LYS ALA ASN LEU ASN TRP GLY LEU THR ASP GLU LEU SEQRES 12 A 308 LYS GLU ALA PHE VAL ALA SER GLY GLY GLU ASN ILE PHE SEQRES 13 A 308 VAL ALA SER GLY GLY GLU ARG SER LEU ILE ASN LYS ASN SEQRES 14 A 308 ILE PRO ASN SER GLY TRP LEU ALA GLY PHE THR SER GLY SEQRES 15 A 308 GLU GLY CYS PHE PHE VAL SER LEU ILE LYS SER LYS SER SEQRES 16 A 308 LYS LEU GLY VAL GLN VAL GLN LEU VAL PHE SER ILE THR SEQRES 17 A 308 GLN HIS ALA ARG ASP ARG GLU LEU MET ASP ASN LEU VAL SEQRES 18 A 308 THR TYR LEU GLY CYS GLY TYR ILE LYS GLU LYS LYS LYS SEQRES 19 A 308 SER GLU PHE SER TRP LEU GLU PHE VAL VAL THR LYS PHE SEQRES 20 A 308 SER ASP ILE LYS ASP LYS ILE ILE PRO VAL PHE GLN GLU SEQRES 21 A 308 ASN ASN ILE ILE GLY VAL LYS LEU GLU ASP PHE GLU ASP SEQRES 22 A 308 TRP CYS LYS VAL ALA LYS LEU ILE GLU GLU LYS LYS HIS SEQRES 23 A 308 LEU THR GLU SER GLY LEU GLU GLU ILE ARG ASN ILE LYS SEQRES 24 A 308 LEU ASN MET ASN LYS GLY ARG VAL LEU SEQRES 1 B 27 DC DC DT DT DT DC DC DG DC DT DT DA DT SEQRES 2 B 27 DT DC DA DA DC DC DC DT DT DT DA DC DC SEQRES 3 B 27 DC SEQRES 1 C 27 DG DG DT DA DA DA DG DG DG DT DT DG DA SEQRES 2 C 27 DA DT DA DA DG DC DG DG DA DA DA DG DG SEQRES 3 C 27 DG HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HETNAM CA CALCIUM ION FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *219(H2 O) HELIX 1 AA1 ASN A 8 GLU A 19 1 12 HELIX 2 AA2 ASP A 50 LYS A 62 1 13 HELIX 3 AA3 ARG A 80 TYR A 94 1 15 HELIX 4 AA4 GLN A 99 ASN A 116 1 18 HELIX 5 AA5 LYS A 117 LEU A 120 5 4 HELIX 6 AA6 LYS A 121 ALA A 133 1 13 HELIX 7 AA7 THR A 140 PHE A 147 1 8 HELIX 8 AA8 ASN A 172 GLU A 183 1 12 HELIX 9 AA9 HIS A 210 ARG A 212 5 3 HELIX 10 AB1 ASP A 213 GLY A 225 1 13 HELIX 11 AB2 LYS A 246 LYS A 253 1 8 HELIX 12 AB3 LYS A 253 ASN A 261 1 9 HELIX 13 AB4 VAL A 266 GLU A 283 1 18 HELIX 14 AB5 LYS A 284 LEU A 287 5 4 HELIX 15 AB6 THR A 288 ASN A 301 1 14 HELIX 16 AB7 MET A 302 ARG A 306 5 5 SHEET 1 AA1 4 GLY A 20 ASN A 28 0 SHEET 2 AA1 4 TYR A 36 HIS A 47 -1 O SER A 37 N ARG A 27 SHEET 3 AA1 4 ALA A 73 VAL A 78 -1 O VAL A 78 N PHE A 42 SHEET 4 AA1 4 VAL A 65 SER A 69 -1 N ALA A 67 O SER A 75 SHEET 1 AA2 4 GLY A 184 LYS A 192 0 SHEET 2 AA2 4 VAL A 199 GLN A 209 -1 O GLN A 200 N ILE A 191 SHEET 3 AA2 4 PHE A 237 VAL A 244 -1 O PHE A 242 N ILE A 207 SHEET 4 AA2 4 TYR A 228 LYS A 234 -1 N LYS A 234 O PHE A 237 LINK O ALA A 18 CA CA A 401 1555 1555 2.32 LINK OE1 GLU A 19 CA CA A 402 1555 1555 2.84 LINK OE2 GLU A 19 CA CA A 403 1555 1555 2.38 LINK O GLY A 182 CA CA A 403 1555 1555 2.36 LINK OE1 GLU A 183 CA CA A 401 1555 1555 2.32 LINK OE2 GLU A 183 CA CA A 402 1555 1555 2.17 LINK CA CA A 401 O HOH A 552 1555 1555 2.37 LINK CA CA A 401 OP1 DC B 15 1555 1555 2.30 LINK CA CA A 401 OP2 DA C 16 1555 1555 2.25 LINK CA CA A 401 O HOH C 135 1555 1555 2.30 LINK CA CA A 402 O3' DC B 15 1555 1555 2.58 LINK CA CA A 402 OP2 DA B 16 1555 1555 2.60 LINK CA CA A 402 O3' DT C 15 1555 1555 2.75 LINK CA CA A 402 OP2 DA C 16 1555 1555 2.60 LINK CA CA A 403 O HOH A 555 1555 1555 2.29 LINK CA CA A 403 OP2 DA B 16 1555 1555 2.25 LINK CA CA A 403 O HOH B 145 1555 1555 2.29 LINK CA CA A 403 OP1 DT C 15 1555 1555 2.30 SITE 1 AC1 6 ALA A 18 GLU A 183 HOH A 552 DC B 15 SITE 2 AC1 6 DA C 16 HOH C 135 SITE 1 AC2 6 GLU A 19 GLU A 183 DC B 15 DA B 16 SITE 2 AC2 6 DT C 15 DA C 16 SITE 1 AC3 6 GLU A 19 GLY A 182 HOH A 555 DA B 16 SITE 2 AC3 6 HOH B 145 DT C 15 CRYST1 151.985 39.895 73.986 90.00 90.43 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006580 0.000000 0.000049 0.00000 SCALE2 0.000000 0.025066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013516 0.00000