HEADER HYDROLASE 02-MAR-15 4YIJ TITLE CRYSTAL STRUCTURE OF STAPHYLCOCCAL NUCLEASE VARIANT DELTA+PHS A109E AT TITLE 2 CRYOGENIC TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TNASE,MICROCOCCAL NUCLEASE,STAPHYLOCOCCAL NUCLEASE; COMPND 5 EC: 3.1.31.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: NUC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS NUCLEASE, HYPERSTABLE, PDTP, HYDROLASE, IONIZABLE GROUP EXPDTA X-RAY DIFFRACTION AUTHOR L.A.SKERRITT,P.C.BELL-UPP,J.L.SCHLESSMAN,E.B.GARCIA-MORENO REVDAT 5 27-SEP-23 4YIJ 1 LINK REVDAT 4 25-DEC-19 4YIJ 1 REMARK REVDAT 3 27-SEP-17 4YIJ 1 SOURCE REMARK REVDAT 2 27-MAY-15 4YIJ 1 REMARK REVDAT 1 18-MAR-15 4YIJ 0 JRNL AUTH L.A.SKERRITT,P.C.BELL-UPP,J.L.SCHLESSMAN,E.B.GARCIA-MORENO JRNL TITL CRYSTAL STRUCTURE OF STAPHYLCOCCAL NUCLEASE VARIANT JRNL TITL 2 DELTA+PHS A109E AT CRYOGENIC TEMPERATURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.900 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2449 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2521 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3331 ; 1.807 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5892 ; 1.854 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;34.598 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;13.276 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2686 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 508 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1135 ; 1.128 ; 0.735 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1134 ; 1.117 ; 0.733 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1432 ; 1.647 ; 1.094 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2322 -19.7139 28.0381 REMARK 3 T TENSOR REMARK 3 T11: 0.1082 T22: 0.0644 REMARK 3 T33: 0.1268 T12: 0.0246 REMARK 3 T13: 0.0291 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 13.5145 L22: 7.6748 REMARK 3 L33: 4.0635 L12: -4.6799 REMARK 3 L13: 1.7044 L23: -1.4027 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.2284 S13: -1.1774 REMARK 3 S21: -0.1606 S22: -0.0686 S23: 0.1309 REMARK 3 S31: 0.5725 S32: 0.3702 S33: 0.0770 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): -18.9097 -3.3784 33.1179 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0342 REMARK 3 T33: 0.0285 T12: -0.0066 REMARK 3 T13: 0.0147 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.2145 L22: 1.3289 REMARK 3 L33: 1.5186 L12: 0.4563 REMARK 3 L13: -0.5489 L23: 0.5276 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: -0.1219 S13: -0.0673 REMARK 3 S21: 0.1404 S22: -0.1161 S23: 0.1568 REMARK 3 S31: 0.0114 S32: -0.0921 S33: 0.0690 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5895 -1.0972 22.8764 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: 0.0628 REMARK 3 T33: 0.0294 T12: 0.0033 REMARK 3 T13: -0.0119 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.3087 L22: 1.6896 REMARK 3 L33: 0.9949 L12: 0.3574 REMARK 3 L13: -0.3688 L23: -0.3276 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: 0.0251 S13: 0.0298 REMARK 3 S21: -0.0680 S22: -0.0098 S23: 0.0797 REMARK 3 S31: -0.0909 S32: -0.0066 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9457 -17.0642 33.9091 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.0414 REMARK 3 T33: 0.0465 T12: 0.0131 REMARK 3 T13: -0.0035 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 3.0766 L22: 19.5583 REMARK 3 L33: 14.2855 L12: -1.7713 REMARK 3 L13: -1.8175 L23: 12.6220 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: -0.1308 S13: -0.1963 REMARK 3 S21: 0.4713 S22: -0.0296 S23: -0.0684 REMARK 3 S31: 0.4525 S32: 0.1817 S33: 0.0125 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4846 -7.4836 19.7932 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: 0.0254 REMARK 3 T33: 0.0131 T12: 0.0065 REMARK 3 T13: 0.0052 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.4061 L22: 0.6298 REMARK 3 L33: 1.4218 L12: 0.0475 REMARK 3 L13: -0.0928 L23: -0.1921 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.0172 S13: -0.0584 REMARK 3 S21: -0.0779 S22: -0.0472 S23: -0.0484 REMARK 3 S31: -0.0050 S32: 0.1267 S33: 0.0613 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1971 -1.5768 53.5808 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.0198 REMARK 3 T33: 0.0282 T12: -0.0017 REMARK 3 T13: -0.0009 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.8964 L22: 1.1462 REMARK 3 L33: 1.5227 L12: 0.0288 REMARK 3 L13: -0.1506 L23: -0.0614 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: -0.0086 S13: -0.0074 REMARK 3 S21: 0.0306 S22: 0.0194 S23: -0.1019 REMARK 3 S31: 0.0353 S32: 0.0669 S33: 0.0090 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6058 7.9517 41.9934 REMARK 3 T TENSOR REMARK 3 T11: 0.0613 T22: 0.0133 REMARK 3 T33: 0.0282 T12: -0.0207 REMARK 3 T13: 0.0093 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.4836 L22: 0.9287 REMARK 3 L33: 2.5985 L12: 0.0729 REMARK 3 L13: 1.0051 L23: 0.1520 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: 0.1046 S13: 0.1829 REMARK 3 S21: -0.0663 S22: 0.0460 S23: -0.0518 REMARK 3 S31: -0.2637 S32: 0.0224 S33: 0.0942 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4YIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34804 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 55.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.09 REMARK 200 R MERGE (I) : 0.02730 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.38 REMARK 200 R MERGE FOR SHELL (I) : 0.22270 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3BDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% MPD, 25MM POTASSIUM PHOSPHATE, REMARK 280 CALCIUM CHLORIDE, PDTP, PH 6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.48000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.26650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.14150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.26650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.14150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 465 ASP B 143 REMARK 465 ASN B 144 REMARK 465 ALA B 145 REMARK 465 ASP B 146 REMARK 465 SER B 147 REMARK 465 GLY B 148 REMARK 465 GLN B 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 118 40.82 -109.95 REMARK 500 ASN A 138 -109.50 59.68 REMARK 500 SER B 3 174.75 -55.39 REMARK 500 ILE B 18 -62.24 -104.75 REMARK 500 ASN B 51 103.50 -163.27 REMARK 500 ASN B 138 -108.66 62.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 19 OD1 REMARK 620 2 ASP A 19 OD2 49.0 REMARK 620 3 ASP A 21 OD1 76.0 124.7 REMARK 620 4 HOH A 350 O 155.7 154.6 79.8 REMARK 620 5 HOH A 354 O 78.8 84.7 78.7 95.0 REMARK 620 6 HOH A 365 O 87.4 93.6 88.5 93.7 163.0 REMARK 620 7 HOH A 378 O 126.4 78.4 156.6 77.9 110.1 86.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 19 OD1 REMARK 620 2 ASP B 19 OD2 49.9 REMARK 620 3 ASP B 21 OD1 76.8 126.6 REMARK 620 4 HOH B 312 O 87.3 91.1 88.1 REMARK 620 5 HOH B 344 O 155.7 153.9 79.1 94.7 REMARK 620 6 HOH B 353 O 128.5 78.7 154.7 91.5 75.7 REMARK 620 7 HOH B 360 O 79.8 87.0 80.9 164.6 93.7 103.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THP B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BDC RELATED DB: PDB REMARK 900 RELATED ID: 4OL7 RELATED DB: PDB DBREF 4YIJ A 1 149 UNP P00644 NUC_STAAU 83 231 DBREF 4YIJ B 1 149 UNP P00644 NUC_STAAU 83 231 SEQADV 4YIJ A UNP P00644 THR 126 DELETION SEQADV 4YIJ A UNP P00644 LYS 127 DELETION SEQADV 4YIJ A UNP P00644 HIS 128 DELETION SEQADV 4YIJ A UNP P00644 PRO 129 DELETION SEQADV 4YIJ A UNP P00644 LYS 130 DELETION SEQADV 4YIJ A UNP P00644 LYS 131 DELETION SEQADV 4YIJ PHE A 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 4YIJ ASN A 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 4YIJ GLU A 109 UNP P00644 ALA 191 ENGINEERED MUTATION SEQADV 4YIJ GLY A 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 4YIJ LEU A 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 4YIJ ALA A 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQADV 4YIJ B UNP P00644 THR 126 DELETION SEQADV 4YIJ B UNP P00644 LYS 127 DELETION SEQADV 4YIJ B UNP P00644 HIS 128 DELETION SEQADV 4YIJ B UNP P00644 PRO 129 DELETION SEQADV 4YIJ B UNP P00644 LYS 130 DELETION SEQADV 4YIJ B UNP P00644 LYS 131 DELETION SEQADV 4YIJ PHE B 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 4YIJ ASN B 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 4YIJ GLU B 109 UNP P00644 ALA 191 ENGINEERED MUTATION SEQADV 4YIJ GLY B 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 4YIJ LEU B 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 4YIJ ALA B 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 A 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 SER ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 A 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU GLU LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN SEQRES 1 B 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 B 143 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 B 143 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 B 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 B 143 SER ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 B 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 B 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 B 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU GLU LYS SEQRES 9 B 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 B 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 B 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET CA A 201 1 HET THP A 202 25 HET CA B 201 1 HET THP B 202 25 HETNAM CA CALCIUM ION HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE FORMUL 3 CA 2(CA 2+) FORMUL 4 THP 2(C10 H16 N2 O11 P2) FORMUL 7 HOH *276(H2 O) HELIX 1 AA1 TYR A 54 ALA A 69 1 16 HELIX 2 AA2 VAL A 99 GLN A 106 1 8 HELIX 3 AA3 HIS A 121 GLU A 135 1 15 HELIX 4 AA4 LEU A 137 SER A 141 5 5 HELIX 5 AA5 TYR B 54 ALA B 69 1 16 HELIX 6 AA6 VAL B 99 GLN B 106 1 8 HELIX 7 AA7 TYR B 115 ASN B 119 5 5 HELIX 8 AA8 HIS B 121 GLU B 135 1 15 HELIX 9 AA9 LEU B 137 SER B 141 5 5 SHEET 1 AA1 7 LYS A 97 MET A 98 0 SHEET 2 AA1 7 GLY A 88 ALA A 94 -1 N ALA A 94 O LYS A 97 SHEET 3 AA1 7 ILE A 72 GLU A 75 -1 N GLU A 73 O TYR A 93 SHEET 4 AA1 7 LYS A 9 ALA A 17 -1 N GLU A 10 O VAL A 74 SHEET 5 AA1 7 THR A 22 TYR A 27 -1 O MET A 26 N THR A 13 SHEET 6 AA1 7 GLN A 30 LEU A 36 -1 O PHE A 34 N VAL A 23 SHEET 7 AA1 7 GLY A 88 ALA A 94 1 O GLY A 88 N ARG A 35 SHEET 1 AA2 2 VAL A 39 ASP A 40 0 SHEET 2 AA2 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 SHEET 1 AA3 7 LYS B 97 MET B 98 0 SHEET 2 AA3 7 GLY B 88 ALA B 94 -1 N ALA B 94 O LYS B 97 SHEET 3 AA3 7 ILE B 72 PHE B 76 -1 N GLU B 75 O TYR B 91 SHEET 4 AA3 7 LYS B 9 ALA B 17 -1 N GLU B 10 O VAL B 74 SHEET 5 AA3 7 THR B 22 TYR B 27 -1 O MET B 26 N THR B 13 SHEET 6 AA3 7 GLN B 30 LEU B 36 -1 O PHE B 34 N VAL B 23 SHEET 7 AA3 7 GLY B 88 ALA B 94 1 O GLY B 88 N ARG B 35 SHEET 1 AA4 2 VAL B 39 ASP B 40 0 SHEET 2 AA4 2 LYS B 110 VAL B 111 -1 O LYS B 110 N ASP B 40 LINK OD1 ASP A 19 CA CA A 201 1555 1555 2.87 LINK OD2 ASP A 19 CA CA A 201 1555 1555 2.36 LINK OD1 ASP A 21 CA CA A 201 1555 1555 2.35 LINK CA CA A 201 O HOH A 350 1555 1555 2.36 LINK CA CA A 201 O HOH A 354 1555 1555 2.40 LINK CA CA A 201 O HOH A 365 1555 1555 2.35 LINK CA CA A 201 O HOH A 378 1555 1555 2.40 LINK OD1 ASP B 19 CA CA B 201 1555 1555 2.83 LINK OD2 ASP B 19 CA CA B 201 1555 1555 2.36 LINK OD1 ASP B 21 CA CA B 201 1555 1555 2.36 LINK CA CA B 201 O HOH B 312 1555 1555 2.31 LINK CA CA B 201 O HOH B 344 1555 1555 2.36 LINK CA CA B 201 O HOH B 353 1555 1555 2.41 LINK CA CA B 201 O HOH B 360 1555 1555 2.40 SITE 1 AC1 6 ASP A 19 ASP A 21 HOH A 350 HOH A 354 SITE 2 AC1 6 HOH A 365 HOH A 378 SITE 1 AC2 19 ARG A 35 ASP A 40 LYS A 84 TYR A 85 SITE 2 AC2 19 ARG A 87 LEU A 89 TYR A 113 HOH A 310 SITE 3 AC2 19 HOH A 315 HOH A 350 HOH A 359 HOH A 363 SITE 4 AC2 19 HOH A 364 HOH A 365 HOH A 366 HOH A 385 SITE 5 AC2 19 HOH A 405 HOH A 419 ARG B 105 SITE 1 AC3 6 ASP B 19 ASP B 21 HOH B 312 HOH B 344 SITE 2 AC3 6 HOH B 353 HOH B 360 SITE 1 AC4 19 ARG A 105 ALA B 1 ARG B 35 ASP B 40 SITE 2 AC4 19 LYS B 84 TYR B 85 ARG B 87 LEU B 89 SITE 3 AC4 19 TYR B 113 TYR B 115 HOH B 306 HOH B 307 SITE 4 AC4 19 HOH B 312 HOH B 315 HOH B 344 HOH B 365 SITE 5 AC4 19 HOH B 366 HOH B 377 HOH B 392 CRYST1 46.960 54.283 108.533 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021295 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009214 0.00000