HEADER OXIDOREDUCTASE 03-MAR-15 4YJF TITLE CRYSTAL STRUCTURE OF DAAO(Y228L/R283G) VARIANT (S-METHYLBENZYLAMINE TITLE 2 BINDING FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO-ACID OXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-341; COMPND 5 SYNONYM: DAO; COMPND 6 EC: 1.4.3.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: D-AMINO-ACID OXIDASE; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 1-339; COMPND 13 SYNONYM: DAO; COMPND 14 EC: 1.4.3.3; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: DAO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 10 ORGANISM_COMMON: PIG; SOURCE 11 ORGANISM_TAXID: 9823; SOURCE 12 GENE: DAO; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINE OXIDASE, VARIANT OF D-AMINO ACID OXIDASE, S-METHYLBENZYLAMINE KEYWDS 2 BINDING FORM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.NAKANO,K.YASUKAWA,N.KAWAHARA,E.ISHITSUBO,H.TOKIWA,Y.ASANO REVDAT 3 08-NOV-23 4YJF 1 REMARK REVDAT 2 27-SEP-17 4YJF 1 JRNL REMARK REVDAT 1 06-APR-16 4YJF 0 JRNL AUTH S.NAKANO,K.YASUKAWA,N.KAWAHARA,E.ISHITSUBO,H.TOKIWA,Y.ASANO JRNL TITL CRYSTAL STRUCTURE OF DAAO VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 32833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1730 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2314 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5433 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.797 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5733 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5339 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7829 ; 1.484 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12233 ; 0.801 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 678 ; 6.067 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;38.745 ;23.582 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 891 ;19.131 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;18.456 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 840 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6458 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1400 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 338 B 1 338 20283 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34607 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 23.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3WGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.1M TRIS-HCL(PH 8.5), REMARK 280 0.2M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.42200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.08900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.98650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.08900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.42200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.98650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 HIS A 20 NH2 ARG A 155 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 92 CB - CA - C ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG A 286 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 286 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 VAL B 92 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG B 286 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 53 119.09 -170.81 REMARK 500 SER A 136 -155.23 -135.99 REMARK 500 GLN A 190 117.02 -161.94 REMARK 500 ALA A 207 66.28 -152.10 REMARK 500 ASN A 225 53.63 -102.28 REMARK 500 PHE A 242 81.09 -161.90 REMARK 500 GLN B 53 117.71 -167.56 REMARK 500 VAL B 111 -178.82 -67.63 REMARK 500 SER B 136 -154.86 -136.27 REMARK 500 GLN B 190 112.31 -161.38 REMARK 500 ALA B 207 66.61 -150.93 REMARK 500 ASN B 225 54.67 -103.70 REMARK 500 PHE B 242 85.04 -163.99 REMARK 500 ASN B 308 83.16 -151.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 98B A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 98B B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YJH RELATED DB: PDB REMARK 900 RELATED ID: 4YJG RELATED DB: PDB REMARK 900 RELATED ID: 4YJD RELATED DB: PDB DBREF 4YJF A 1 341 UNP P00371 OXDA_PIG 1 341 DBREF 4YJF B 1 339 UNP P00371 OXDA_PIG 1 339 SEQADV 4YJF LEU A 228 UNP P00371 TYR 228 ENGINEERED MUTATION SEQADV 4YJF GLY A 283 UNP P00371 ARG 283 ENGINEERED MUTATION SEQADV 4YJF LEU B 228 UNP P00371 TYR 228 ENGINEERED MUTATION SEQADV 4YJF GLY B 283 UNP P00371 ARG 283 ENGINEERED MUTATION SEQRES 1 A 341 MET ARG VAL VAL VAL ILE GLY ALA GLY VAL ILE GLY LEU SEQRES 2 A 341 SER THR ALA LEU CYS ILE HIS GLU ARG TYR HIS SER VAL SEQRES 3 A 341 LEU GLN PRO LEU ASP VAL LYS VAL TYR ALA ASP ARG PHE SEQRES 4 A 341 THR PRO PHE THR THR THR ASP VAL ALA ALA GLY LEU TRP SEQRES 5 A 341 GLN PRO TYR THR SER GLU PRO SER ASN PRO GLN GLU ALA SEQRES 6 A 341 ASN TRP ASN GLN GLN THR PHE ASN TYR LEU LEU SER HIS SEQRES 7 A 341 ILE GLY SER PRO ASN ALA ALA ASN MET GLY LEU THR PRO SEQRES 8 A 341 VAL SER GLY TYR ASN LEU PHE ARG GLU ALA VAL PRO ASP SEQRES 9 A 341 PRO TYR TRP LYS ASP MET VAL LEU GLY PHE ARG LYS LEU SEQRES 10 A 341 THR PRO ARG GLU LEU ASP MET PHE PRO ASP TYR ARG TYR SEQRES 11 A 341 GLY TRP PHE ASN THR SER LEU ILE LEU GLU GLY ARG LYS SEQRES 12 A 341 TYR LEU GLN TRP LEU THR GLU ARG LEU THR GLU ARG GLY SEQRES 13 A 341 VAL LYS PHE PHE LEU ARG LYS VAL GLU SER PHE GLU GLU SEQRES 14 A 341 VAL ALA ARG GLY GLY ALA ASP VAL ILE ILE ASN CYS THR SEQRES 15 A 341 GLY VAL TRP ALA GLY VAL LEU GLN PRO ASP PRO LEU LEU SEQRES 16 A 341 GLN PRO GLY ARG GLY GLN ILE ILE LYS VAL ASP ALA PRO SEQRES 17 A 341 TRP LEU LYS ASN PHE ILE ILE THR HIS ASP LEU GLU ARG SEQRES 18 A 341 GLY ILE TYR ASN SER PRO LEU ILE ILE PRO GLY LEU GLN SEQRES 19 A 341 ALA VAL THR LEU GLY GLY THR PHE GLN VAL GLY ASN TRP SEQRES 20 A 341 ASN GLU ILE ASN ASN ILE GLN ASP HIS ASN THR ILE TRP SEQRES 21 A 341 GLU GLY CYS CYS ARG LEU GLU PRO THR LEU LYS ASP ALA SEQRES 22 A 341 LYS ILE VAL GLY GLU TYR THR GLY PHE GLY PRO VAL ARG SEQRES 23 A 341 PRO GLN VAL ARG LEU GLU ARG GLU GLN LEU ARG PHE GLY SEQRES 24 A 341 SER SER ASN THR GLU VAL ILE HIS ASN TYR GLY HIS GLY SEQRES 25 A 341 GLY TYR GLY LEU THR ILE HIS TRP GLY CYS ALA LEU GLU SEQRES 26 A 341 VAL ALA LYS LEU PHE GLY LYS VAL LEU GLU GLU ARG ASN SEQRES 27 A 341 LEU LEU THR SEQRES 1 B 339 MET ARG VAL VAL VAL ILE GLY ALA GLY VAL ILE GLY LEU SEQRES 2 B 339 SER THR ALA LEU CYS ILE HIS GLU ARG TYR HIS SER VAL SEQRES 3 B 339 LEU GLN PRO LEU ASP VAL LYS VAL TYR ALA ASP ARG PHE SEQRES 4 B 339 THR PRO PHE THR THR THR ASP VAL ALA ALA GLY LEU TRP SEQRES 5 B 339 GLN PRO TYR THR SER GLU PRO SER ASN PRO GLN GLU ALA SEQRES 6 B 339 ASN TRP ASN GLN GLN THR PHE ASN TYR LEU LEU SER HIS SEQRES 7 B 339 ILE GLY SER PRO ASN ALA ALA ASN MET GLY LEU THR PRO SEQRES 8 B 339 VAL SER GLY TYR ASN LEU PHE ARG GLU ALA VAL PRO ASP SEQRES 9 B 339 PRO TYR TRP LYS ASP MET VAL LEU GLY PHE ARG LYS LEU SEQRES 10 B 339 THR PRO ARG GLU LEU ASP MET PHE PRO ASP TYR ARG TYR SEQRES 11 B 339 GLY TRP PHE ASN THR SER LEU ILE LEU GLU GLY ARG LYS SEQRES 12 B 339 TYR LEU GLN TRP LEU THR GLU ARG LEU THR GLU ARG GLY SEQRES 13 B 339 VAL LYS PHE PHE LEU ARG LYS VAL GLU SER PHE GLU GLU SEQRES 14 B 339 VAL ALA ARG GLY GLY ALA ASP VAL ILE ILE ASN CYS THR SEQRES 15 B 339 GLY VAL TRP ALA GLY VAL LEU GLN PRO ASP PRO LEU LEU SEQRES 16 B 339 GLN PRO GLY ARG GLY GLN ILE ILE LYS VAL ASP ALA PRO SEQRES 17 B 339 TRP LEU LYS ASN PHE ILE ILE THR HIS ASP LEU GLU ARG SEQRES 18 B 339 GLY ILE TYR ASN SER PRO LEU ILE ILE PRO GLY LEU GLN SEQRES 19 B 339 ALA VAL THR LEU GLY GLY THR PHE GLN VAL GLY ASN TRP SEQRES 20 B 339 ASN GLU ILE ASN ASN ILE GLN ASP HIS ASN THR ILE TRP SEQRES 21 B 339 GLU GLY CYS CYS ARG LEU GLU PRO THR LEU LYS ASP ALA SEQRES 22 B 339 LYS ILE VAL GLY GLU TYR THR GLY PHE GLY PRO VAL ARG SEQRES 23 B 339 PRO GLN VAL ARG LEU GLU ARG GLU GLN LEU ARG PHE GLY SEQRES 24 B 339 SER SER ASN THR GLU VAL ILE HIS ASN TYR GLY HIS GLY SEQRES 25 B 339 GLY TYR GLY LEU THR ILE HIS TRP GLY CYS ALA LEU GLU SEQRES 26 B 339 VAL ALA LYS LEU PHE GLY LYS VAL LEU GLU GLU ARG ASN SEQRES 27 B 339 LEU HET FAD A 401 53 HET SO4 A 402 5 HET SO4 A 403 5 HET 98B A 404 9 HET FAD B 401 53 HET SO4 B 402 5 HET SO4 B 403 5 HET 98B B 404 9 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM 98B (1S)-1-PHENYLETHANAMINE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 SO4 4(O4 S 2-) FORMUL 6 98B 2(C8 H11 N) FORMUL 11 HOH *54(H2 O) HELIX 1 AA1 GLY A 9 HIS A 24 1 16 HELIX 2 AA2 THR A 43 ALA A 48 1 6 HELIX 3 AA3 PRO A 62 SER A 77 1 16 HELIX 4 AA4 ALA A 84 MET A 87 5 4 HELIX 5 AA5 THR A 118 PHE A 125 1 8 HELIX 6 AA6 GLU A 140 ARG A 155 1 16 HELIX 7 AA7 SER A 166 GLY A 173 1 8 HELIX 8 AA8 THR A 182 LEU A 189 5 8 HELIX 9 AA9 ASN A 252 GLU A 267 1 16 HELIX 10 AB1 PRO A 268 ALA A 273 5 6 HELIX 11 AB2 HIS A 311 GLY A 313 5 3 HELIX 12 AB3 TYR A 314 ARG A 337 1 24 HELIX 13 AB4 GLY B 9 HIS B 24 1 16 HELIX 14 AB5 THR B 43 ALA B 48 1 6 HELIX 15 AB6 ASN B 61 HIS B 78 1 18 HELIX 16 AB7 ALA B 84 MET B 87 5 4 HELIX 17 AB8 THR B 118 MET B 124 1 7 HELIX 18 AB9 GLU B 140 ARG B 155 1 16 HELIX 19 AC1 SER B 166 GLY B 173 1 8 HELIX 20 AC2 THR B 182 VAL B 184 5 3 HELIX 21 AC3 TRP B 185 GLN B 190 1 6 HELIX 22 AC4 ASN B 252 GLU B 267 1 16 HELIX 23 AC5 PRO B 268 ALA B 273 5 6 HELIX 24 AC6 HIS B 311 GLY B 313 5 3 HELIX 25 AC7 TYR B 314 ARG B 337 1 24 SHEET 1 AA1 6 LYS A 158 LEU A 161 0 SHEET 2 AA1 6 ASP A 31 ALA A 36 1 N VAL A 34 O LYS A 158 SHEET 3 AA1 6 ARG A 2 ILE A 6 1 N VAL A 3 O ASP A 31 SHEET 4 AA1 6 VAL A 177 ASN A 180 1 O ILE A 179 N ILE A 6 SHEET 5 AA1 6 SER A 301 TYR A 309 1 O GLU A 304 N ILE A 178 SHEET 6 AA1 6 ARG A 290 PHE A 298 -1 N ARG A 290 O TYR A 309 SHEET 1 AA2 8 LEU A 112 LYS A 116 0 SHEET 2 AA2 8 TYR A 130 LEU A 139 -1 O THR A 135 N LEU A 112 SHEET 3 AA2 8 LEU A 89 PHE A 98 -1 N VAL A 92 O SER A 136 SHEET 4 AA2 8 PHE A 213 THR A 216 1 O ILE A 215 N LEU A 97 SHEET 5 AA2 8 LEU A 228 PRO A 231 -1 O ILE A 229 N ILE A 214 SHEET 6 AA2 8 VAL A 236 GLY A 239 -1 O THR A 237 N ILE A 230 SHEET 7 AA2 8 GLN A 196 ASP A 206 -1 N VAL A 205 O VAL A 236 SHEET 8 AA2 8 GLN A 243 VAL A 244 -1 O GLN A 243 N ARG A 199 SHEET 1 AA3 8 LEU A 112 LYS A 116 0 SHEET 2 AA3 8 TYR A 130 LEU A 139 -1 O THR A 135 N LEU A 112 SHEET 3 AA3 8 LEU A 89 PHE A 98 -1 N VAL A 92 O SER A 136 SHEET 4 AA3 8 PHE A 213 THR A 216 1 O ILE A 215 N LEU A 97 SHEET 5 AA3 8 LEU A 228 PRO A 231 -1 O ILE A 229 N ILE A 214 SHEET 6 AA3 8 VAL A 236 GLY A 239 -1 O THR A 237 N ILE A 230 SHEET 7 AA3 8 GLN A 196 ASP A 206 -1 N VAL A 205 O VAL A 236 SHEET 8 AA3 8 LYS A 274 VAL A 285 -1 O VAL A 285 N GLN A 196 SHEET 1 AA4 6 LYS B 158 LEU B 161 0 SHEET 2 AA4 6 ASP B 31 ALA B 36 1 N VAL B 34 O LYS B 158 SHEET 3 AA4 6 ARG B 2 ILE B 6 1 N VAL B 3 O ASP B 31 SHEET 4 AA4 6 VAL B 177 ASN B 180 1 O ILE B 179 N ILE B 6 SHEET 5 AA4 6 SER B 301 TYR B 309 1 O GLU B 304 N ILE B 178 SHEET 6 AA4 6 ARG B 290 PHE B 298 -1 N LEU B 296 O THR B 303 SHEET 1 AA5 8 LEU B 112 LYS B 116 0 SHEET 2 AA5 8 TYR B 130 LEU B 139 -1 O PHE B 133 N ARG B 115 SHEET 3 AA5 8 LEU B 89 PHE B 98 -1 N VAL B 92 O SER B 136 SHEET 4 AA5 8 PHE B 213 THR B 216 1 O ILE B 215 N LEU B 97 SHEET 5 AA5 8 LEU B 228 PRO B 231 -1 O ILE B 229 N ILE B 214 SHEET 6 AA5 8 VAL B 236 GLY B 239 -1 O THR B 237 N ILE B 230 SHEET 7 AA5 8 GLN B 196 ASP B 206 -1 N VAL B 205 O VAL B 236 SHEET 8 AA5 8 GLN B 243 VAL B 244 -1 O GLN B 243 N ARG B 199 SHEET 1 AA6 8 LEU B 112 LYS B 116 0 SHEET 2 AA6 8 TYR B 130 LEU B 139 -1 O PHE B 133 N ARG B 115 SHEET 3 AA6 8 LEU B 89 PHE B 98 -1 N VAL B 92 O SER B 136 SHEET 4 AA6 8 PHE B 213 THR B 216 1 O ILE B 215 N LEU B 97 SHEET 5 AA6 8 LEU B 228 PRO B 231 -1 O ILE B 229 N ILE B 214 SHEET 6 AA6 8 VAL B 236 GLY B 239 -1 O THR B 237 N ILE B 230 SHEET 7 AA6 8 GLN B 196 ASP B 206 -1 N VAL B 205 O VAL B 236 SHEET 8 AA6 8 LYS B 274 VAL B 285 -1 O GLY B 277 N LYS B 204 CISPEP 1 THR A 40 PRO A 41 0 1.89 CISPEP 2 GLN B 28 PRO B 29 0 -2.95 CISPEP 3 THR B 40 PRO B 41 0 1.44 SITE 1 AC1 34 GLY A 7 ALA A 8 GLY A 9 VAL A 10 SITE 2 AC1 34 ILE A 11 ALA A 36 ASP A 37 ARG A 38 SITE 3 AC1 34 THR A 43 THR A 44 THR A 45 ALA A 48 SITE 4 AC1 34 ALA A 49 GLY A 50 LEU A 51 ARG A 162 SITE 5 AC1 34 VAL A 164 CYS A 181 THR A 182 GLY A 183 SITE 6 AC1 34 TRP A 185 ILE A 202 GLY A 281 GLY A 312 SITE 7 AC1 34 GLY A 313 TYR A 314 GLY A 315 LEU A 316 SITE 8 AC1 34 THR A 317 98B A 404 HOH A 505 HOH A 506 SITE 9 AC1 34 HOH A 517 HOH A 522 SITE 1 AC2 7 ARG A 286 GLN A 288 VAL A 289 GLU A 292 SITE 2 AC2 7 HOH A 525 ARG B 22 LYS B 328 SITE 1 AC3 3 THR A 118 PRO A 119 ARG A 120 SITE 1 AC4 5 ALA A 49 TYR A 224 ILE A 230 GLY A 313 SITE 2 AC4 5 FAD A 401 SITE 1 AC5 33 GLY B 7 ALA B 8 GLY B 9 VAL B 10 SITE 2 AC5 33 ILE B 11 ALA B 36 ASP B 37 ARG B 38 SITE 3 AC5 33 THR B 43 THR B 44 THR B 45 ALA B 48 SITE 4 AC5 33 ALA B 49 GLY B 50 LEU B 51 ARG B 162 SITE 5 AC5 33 VAL B 164 CYS B 181 THR B 182 GLY B 183 SITE 6 AC5 33 TRP B 185 GLY B 281 GLY B 312 GLY B 313 SITE 7 AC5 33 TYR B 314 GLY B 315 LEU B 316 THR B 317 SITE 8 AC5 33 98B B 404 HOH B 507 HOH B 508 HOH B 519 SITE 9 AC5 33 HOH B 523 SITE 1 AC6 2 HIS B 24 ARG B 155 SITE 1 AC7 4 ARG A 38 LYS A 163 ARG B 142 GLN B 146 SITE 1 AC8 4 TYR B 224 ILE B 230 GLY B 313 FAD B 401 CRYST1 68.844 91.973 110.178 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009076 0.00000