HEADER OXIDOREDUCTASE 03-MAR-15 4YJG TITLE CRYSTAL STRUCTURE OF DAAO(Y228L/R283G) VARIANT (R-3-AMINO 1- TITLE 2 PHENYLBUTANE BINDING FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO-ACID OXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-341; COMPND 5 SYNONYM: DAO; COMPND 6 EC: 1.4.3.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: D-AMINO-ACID OXIDASE; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 1-340; COMPND 13 SYNONYM: DAO; COMPND 14 EC: 1.4.3.3; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: DAO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 10 ORGANISM_COMMON: PIG; SOURCE 11 ORGANISM_TAXID: 9823; SOURCE 12 GENE: DAO; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINE OXIDASE, VARIANT OF D-AMINO ACID OXIDASE, S-METHYLBENZYLAMINE KEYWDS 2 BINDING FORM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.NAKANO,K.YASUKAWA,N.KAWAHARA,E.ISHITSUBO,H.TOKIWA,Y.ASANO REVDAT 3 08-NOV-23 4YJG 1 REMARK REVDAT 2 27-SEP-17 4YJG 1 JRNL REMARK REVDAT 1 06-APR-16 4YJG 0 JRNL AUTH S.NAKANO,K.YASUKAWA,N.KAWAHARA,E.ISHITSUBO,H.TOKIWA,Y.ASANO JRNL TITL CRYSTAL STRUCTURE OF DAAO VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1253 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1683 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.201 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5733 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5342 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7830 ; 1.497 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12244 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 679 ; 6.095 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;39.499 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 887 ;20.279 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;20.253 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 842 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6455 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1393 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 339 B 1 339 19908 0.15 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3WGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.1M TRIS-HCL (8.5), 0.2M REMARK 280 LITHIUM SULFATE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.29500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.13700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.05700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.13700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.29500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.05700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 293 OE2 GLU B 304 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 92 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 VAL B 92 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 53 119.33 -172.75 REMARK 500 CYS A 181 53.39 -119.55 REMARK 500 GLN A 190 115.92 -161.79 REMARK 500 ALA A 207 70.49 -152.02 REMARK 500 ASN A 225 53.52 -100.00 REMARK 500 PHE A 242 88.55 -152.85 REMARK 500 TYR A 314 18.47 -142.09 REMARK 500 SER B 136 -159.69 -138.71 REMARK 500 CYS B 181 54.17 -117.98 REMARK 500 ALA B 207 71.14 -150.61 REMARK 500 ASN B 225 51.64 -97.84 REMARK 500 TYR B 314 18.89 -142.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4DD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4DD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YJH RELATED DB: PDB REMARK 900 RELATED ID: 4YJF RELATED DB: PDB REMARK 900 RELATED ID: 4YJD RELATED DB: PDB DBREF 4YJG A 1 341 UNP P00371 OXDA_PIG 1 341 DBREF 4YJG B 1 340 UNP P00371 OXDA_PIG 1 340 SEQADV 4YJG LEU A 228 UNP P00371 TYR 228 ENGINEERED MUTATION SEQADV 4YJG GLY A 283 UNP P00371 ARG 283 ENGINEERED MUTATION SEQADV 4YJG LEU B 228 UNP P00371 TYR 228 ENGINEERED MUTATION SEQADV 4YJG GLY B 283 UNP P00371 ARG 283 ENGINEERED MUTATION SEQRES 1 A 341 MET ARG VAL VAL VAL ILE GLY ALA GLY VAL ILE GLY LEU SEQRES 2 A 341 SER THR ALA LEU CYS ILE HIS GLU ARG TYR HIS SER VAL SEQRES 3 A 341 LEU GLN PRO LEU ASP VAL LYS VAL TYR ALA ASP ARG PHE SEQRES 4 A 341 THR PRO PHE THR THR THR ASP VAL ALA ALA GLY LEU TRP SEQRES 5 A 341 GLN PRO TYR THR SER GLU PRO SER ASN PRO GLN GLU ALA SEQRES 6 A 341 ASN TRP ASN GLN GLN THR PHE ASN TYR LEU LEU SER HIS SEQRES 7 A 341 ILE GLY SER PRO ASN ALA ALA ASN MET GLY LEU THR PRO SEQRES 8 A 341 VAL SER GLY TYR ASN LEU PHE ARG GLU ALA VAL PRO ASP SEQRES 9 A 341 PRO TYR TRP LYS ASP MET VAL LEU GLY PHE ARG LYS LEU SEQRES 10 A 341 THR PRO ARG GLU LEU ASP MET PHE PRO ASP TYR ARG TYR SEQRES 11 A 341 GLY TRP PHE ASN THR SER LEU ILE LEU GLU GLY ARG LYS SEQRES 12 A 341 TYR LEU GLN TRP LEU THR GLU ARG LEU THR GLU ARG GLY SEQRES 13 A 341 VAL LYS PHE PHE LEU ARG LYS VAL GLU SER PHE GLU GLU SEQRES 14 A 341 VAL ALA ARG GLY GLY ALA ASP VAL ILE ILE ASN CYS THR SEQRES 15 A 341 GLY VAL TRP ALA GLY VAL LEU GLN PRO ASP PRO LEU LEU SEQRES 16 A 341 GLN PRO GLY ARG GLY GLN ILE ILE LYS VAL ASP ALA PRO SEQRES 17 A 341 TRP LEU LYS ASN PHE ILE ILE THR HIS ASP LEU GLU ARG SEQRES 18 A 341 GLY ILE TYR ASN SER PRO LEU ILE ILE PRO GLY LEU GLN SEQRES 19 A 341 ALA VAL THR LEU GLY GLY THR PHE GLN VAL GLY ASN TRP SEQRES 20 A 341 ASN GLU ILE ASN ASN ILE GLN ASP HIS ASN THR ILE TRP SEQRES 21 A 341 GLU GLY CYS CYS ARG LEU GLU PRO THR LEU LYS ASP ALA SEQRES 22 A 341 LYS ILE VAL GLY GLU TYR THR GLY PHE GLY PRO VAL ARG SEQRES 23 A 341 PRO GLN VAL ARG LEU GLU ARG GLU GLN LEU ARG PHE GLY SEQRES 24 A 341 SER SER ASN THR GLU VAL ILE HIS ASN TYR GLY HIS GLY SEQRES 25 A 341 GLY TYR GLY LEU THR ILE HIS TRP GLY CYS ALA LEU GLU SEQRES 26 A 341 VAL ALA LYS LEU PHE GLY LYS VAL LEU GLU GLU ARG ASN SEQRES 27 A 341 LEU LEU THR SEQRES 1 B 340 MET ARG VAL VAL VAL ILE GLY ALA GLY VAL ILE GLY LEU SEQRES 2 B 340 SER THR ALA LEU CYS ILE HIS GLU ARG TYR HIS SER VAL SEQRES 3 B 340 LEU GLN PRO LEU ASP VAL LYS VAL TYR ALA ASP ARG PHE SEQRES 4 B 340 THR PRO PHE THR THR THR ASP VAL ALA ALA GLY LEU TRP SEQRES 5 B 340 GLN PRO TYR THR SER GLU PRO SER ASN PRO GLN GLU ALA SEQRES 6 B 340 ASN TRP ASN GLN GLN THR PHE ASN TYR LEU LEU SER HIS SEQRES 7 B 340 ILE GLY SER PRO ASN ALA ALA ASN MET GLY LEU THR PRO SEQRES 8 B 340 VAL SER GLY TYR ASN LEU PHE ARG GLU ALA VAL PRO ASP SEQRES 9 B 340 PRO TYR TRP LYS ASP MET VAL LEU GLY PHE ARG LYS LEU SEQRES 10 B 340 THR PRO ARG GLU LEU ASP MET PHE PRO ASP TYR ARG TYR SEQRES 11 B 340 GLY TRP PHE ASN THR SER LEU ILE LEU GLU GLY ARG LYS SEQRES 12 B 340 TYR LEU GLN TRP LEU THR GLU ARG LEU THR GLU ARG GLY SEQRES 13 B 340 VAL LYS PHE PHE LEU ARG LYS VAL GLU SER PHE GLU GLU SEQRES 14 B 340 VAL ALA ARG GLY GLY ALA ASP VAL ILE ILE ASN CYS THR SEQRES 15 B 340 GLY VAL TRP ALA GLY VAL LEU GLN PRO ASP PRO LEU LEU SEQRES 16 B 340 GLN PRO GLY ARG GLY GLN ILE ILE LYS VAL ASP ALA PRO SEQRES 17 B 340 TRP LEU LYS ASN PHE ILE ILE THR HIS ASP LEU GLU ARG SEQRES 18 B 340 GLY ILE TYR ASN SER PRO LEU ILE ILE PRO GLY LEU GLN SEQRES 19 B 340 ALA VAL THR LEU GLY GLY THR PHE GLN VAL GLY ASN TRP SEQRES 20 B 340 ASN GLU ILE ASN ASN ILE GLN ASP HIS ASN THR ILE TRP SEQRES 21 B 340 GLU GLY CYS CYS ARG LEU GLU PRO THR LEU LYS ASP ALA SEQRES 22 B 340 LYS ILE VAL GLY GLU TYR THR GLY PHE GLY PRO VAL ARG SEQRES 23 B 340 PRO GLN VAL ARG LEU GLU ARG GLU GLN LEU ARG PHE GLY SEQRES 24 B 340 SER SER ASN THR GLU VAL ILE HIS ASN TYR GLY HIS GLY SEQRES 25 B 340 GLY TYR GLY LEU THR ILE HIS TRP GLY CYS ALA LEU GLU SEQRES 26 B 340 VAL ALA LYS LEU PHE GLY LYS VAL LEU GLU GLU ARG ASN SEQRES 27 B 340 LEU LEU HET 4DD A 401 11 HET FAD A 402 53 HET SO4 A 403 5 HET SO4 A 404 5 HET 4DD B 401 11 HET FAD B 402 53 HET SO4 B 403 5 HET SO4 B 404 5 HETNAM 4DD (2R)-4-PHENYLBUTAN-2-AMINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION FORMUL 3 4DD 2(C10 H15 N) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 SO4 4(O4 S 2-) FORMUL 11 HOH *52(H2 O) HELIX 1 AA1 GLY A 9 HIS A 24 1 16 HELIX 2 AA2 THR A 43 ALA A 48 1 6 HELIX 3 AA3 PRO A 62 SER A 77 1 16 HELIX 4 AA4 THR A 118 ASP A 123 1 6 HELIX 5 AA5 GLU A 140 ARG A 155 1 16 HELIX 6 AA6 SER A 166 GLY A 173 1 8 HELIX 7 AA7 THR A 182 LEU A 189 5 8 HELIX 8 AA8 ASN A 252 GLU A 267 1 16 HELIX 9 AA9 PRO A 268 ALA A 273 5 6 HELIX 10 AB1 TYR A 314 ARG A 337 1 24 HELIX 11 AB2 GLY B 9 HIS B 24 1 16 HELIX 12 AB3 THR B 43 ALA B 48 1 6 HELIX 13 AB4 ASN B 61 HIS B 78 1 18 HELIX 14 AB5 ALA B 84 MET B 87 5 4 HELIX 15 AB6 THR B 118 ASP B 123 1 6 HELIX 16 AB7 GLU B 140 ARG B 155 1 16 HELIX 17 AB8 SER B 166 GLY B 173 1 8 HELIX 18 AB9 THR B 182 LEU B 189 5 8 HELIX 19 AC1 ASN B 252 GLU B 267 1 16 HELIX 20 AC2 PRO B 268 ALA B 273 5 6 HELIX 21 AC3 TYR B 314 ARG B 337 1 24 SHEET 1 AA1 6 LYS A 158 LEU A 161 0 SHEET 2 AA1 6 ASP A 31 ALA A 36 1 N VAL A 34 O PHE A 160 SHEET 3 AA1 6 ARG A 2 ILE A 6 1 N VAL A 5 O LYS A 33 SHEET 4 AA1 6 VAL A 177 ASN A 180 1 O ILE A 179 N ILE A 6 SHEET 5 AA1 6 SER A 301 TYR A 309 1 O ASN A 308 N ASN A 180 SHEET 6 AA1 6 ARG A 290 PHE A 298 -1 N LEU A 296 O THR A 303 SHEET 1 AA2 8 LEU A 112 LYS A 116 0 SHEET 2 AA2 8 TYR A 130 LEU A 139 -1 O THR A 135 N LEU A 112 SHEET 3 AA2 8 LEU A 89 PHE A 98 -1 N VAL A 92 O SER A 136 SHEET 4 AA2 8 PHE A 213 THR A 216 1 O ILE A 215 N LEU A 97 SHEET 5 AA2 8 LEU A 228 PRO A 231 -1 O ILE A 229 N ILE A 214 SHEET 6 AA2 8 VAL A 236 VAL A 244 -1 O THR A 237 N ILE A 230 SHEET 7 AA2 8 GLN A 196 ASP A 206 -1 N ILE A 203 O LEU A 238 SHEET 8 AA2 8 LYS A 274 VAL A 285 -1 O GLY A 277 N LYS A 204 SHEET 1 AA3 6 LYS B 158 LEU B 161 0 SHEET 2 AA3 6 ASP B 31 ALA B 36 1 N VAL B 34 O LYS B 158 SHEET 3 AA3 6 ARG B 2 ILE B 6 1 N VAL B 5 O LYS B 33 SHEET 4 AA3 6 VAL B 177 ASN B 180 1 O VAL B 177 N VAL B 4 SHEET 5 AA3 6 SER B 301 TYR B 309 1 O ILE B 306 N ILE B 178 SHEET 6 AA3 6 ARG B 290 PHE B 298 -1 N GLU B 294 O VAL B 305 SHEET 1 AA4 8 LEU B 112 LYS B 116 0 SHEET 2 AA4 8 TYR B 130 LEU B 139 -1 O THR B 135 N LEU B 112 SHEET 3 AA4 8 LEU B 89 PHE B 98 -1 N THR B 90 O ILE B 138 SHEET 4 AA4 8 PHE B 213 THR B 216 1 O ILE B 215 N LEU B 97 SHEET 5 AA4 8 LEU B 228 PRO B 231 -1 O ILE B 229 N ILE B 214 SHEET 6 AA4 8 VAL B 236 VAL B 244 -1 O GLY B 239 N LEU B 228 SHEET 7 AA4 8 GLN B 196 ASP B 206 -1 N VAL B 205 O VAL B 236 SHEET 8 AA4 8 LYS B 274 VAL B 285 -1 O VAL B 276 N LYS B 204 CISPEP 1 GLN A 28 PRO A 29 0 -15.18 CISPEP 2 THR A 40 PRO A 41 0 0.39 CISPEP 3 GLN B 28 PRO B 29 0 -3.56 CISPEP 4 THR B 40 PRO B 41 0 -3.31 SITE 1 AC1 5 GLN A 53 TYR A 224 PHE A 242 GLY A 313 SITE 2 AC1 5 FAD A 402 SITE 1 AC2 32 GLY A 7 ALA A 8 GLY A 9 VAL A 10 SITE 2 AC2 32 ILE A 11 ALA A 36 ASP A 37 ARG A 38 SITE 3 AC2 32 THR A 43 THR A 44 THR A 45 ALA A 48 SITE 4 AC2 32 ALA A 49 GLY A 50 LEU A 51 ARG A 162 SITE 5 AC2 32 VAL A 164 CYS A 181 THR A 182 TRP A 185 SITE 6 AC2 32 ILE A 202 GLY A 281 HIS A 311 GLY A 312 SITE 7 AC2 32 GLY A 313 TYR A 314 GLY A 315 LEU A 316 SITE 8 AC2 32 THR A 317 4DD A 401 HOH A 505 HOH A 514 SITE 1 AC3 7 ARG A 286 GLN A 288 VAL A 289 ARG A 290 SITE 2 AC3 7 GLU A 292 ARG B 22 LYS B 328 SITE 1 AC4 3 THR A 118 PRO A 119 ARG A 120 SITE 1 AC5 5 LEU B 51 GLN B 53 TYR B 224 GLY B 313 SITE 2 AC5 5 FAD B 402 SITE 1 AC6 32 GLY B 7 ALA B 8 GLY B 9 VAL B 10 SITE 2 AC6 32 ILE B 11 ALA B 36 ASP B 37 ARG B 38 SITE 3 AC6 32 THR B 44 THR B 45 ALA B 48 ALA B 49 SITE 4 AC6 32 GLY B 50 LEU B 51 ARG B 162 VAL B 164 SITE 5 AC6 32 CYS B 181 THR B 182 GLY B 183 TRP B 185 SITE 6 AC6 32 ILE B 202 GLY B 281 HIS B 311 GLY B 312 SITE 7 AC6 32 GLY B 313 TYR B 314 GLY B 315 LEU B 316 SITE 8 AC6 32 THR B 317 4DD B 401 HOH B 507 HOH B 520 SITE 1 AC7 4 GLU B 21 HIS B 24 ARG B 155 HOH B 501 SITE 1 AC8 4 ARG A 38 LYS A 163 ARG B 142 GLN B 146 CRYST1 68.590 92.114 110.274 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014579 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009068 0.00000