HEADER TRANSFERASE/TRANSFERASE INHIBITOR 03-MAR-15 4YJN TITLE CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) IN TITLE 2 COMPLEX WITH INHIBITOR UW1639 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-507; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, CALCIUM-BINDING, ATP- KEYWDS 2 BINDING, BUMPED KINASE INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MERRITT REVDAT 5 27-SEP-23 4YJN 1 REMARK REVDAT 4 11-DEC-19 4YJN 1 REMARK REVDAT 3 20-SEP-17 4YJN 1 REMARK REVDAT 2 06-JAN-16 4YJN 1 JRNL REVDAT 1 25-NOV-15 4YJN 0 JRNL AUTH W.HUANG,K.K.OJO,Z.ZHANG,K.RIVAS,R.S.VIDADALA,S.SCHEELE, JRNL AUTH 2 A.E.DEROCHER,R.CHOI,M.A.HULVERSON,L.K.BARRETT,I.BRUZUAL, JRNL AUTH 3 L.K.SIDDARAMAIAH,K.M.KERCHNER,M.D.KURNICK,G.M.FREIBERG, JRNL AUTH 4 D.KEMPF,W.G.HOL,E.A.MERRITT,G.NECKERMANN,E.L.DE HOSTOS, JRNL AUTH 5 N.ISOHERRANEN,D.J.MALY,M.PARSONS,J.S.DOGGETT, JRNL AUTH 6 W.C.VAN VOORHIS,E.FAN JRNL TITL SAR STUDIES OF 5-AMINOPYRAZOLE-4-CARBOXAMIDE ANALOGUES AS JRNL TITL 2 POTENT AND SELECTIVE INHIBITORS OF TOXOPLASMA GONDII CDPK1. JRNL REF ACS MED.CHEM.LETT. V. 6 1184 2015 JRNL REFN ISSN 1948-5875 JRNL PMID 26693272 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00319 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, REMARK 1 AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, REMARK 1 AUTH 3 A.J.NAPULI,D.J.MALY,C.L.M.J.VERLINDE,F.S.BUCKNER,M.PARSONS, REMARK 1 AUTH 4 W.G.J.HOL,E.A.MERRITT,W.C.VAN VOORHIS REMARK 1 TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A REMARK 1 TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS REMARK 1 REF NAT.STRUCT.MOL.BIOL V. 17 602 2010 REMARK 1 REFN ISSN 1545-9993 REMARK 1 REFERENCE 2 REMARK 1 AUTH Z.ZHANG,K.K.OJO,R.VIDADALA,E.HUANG,J.A.GEIGER,S.SCHEELE, REMARK 1 AUTH 2 R.CHOI,M.C.REID,K.KEYLOUN,M.PARSONS,E.A.MERRITT,D.J.MALY, REMARK 1 AUTH 3 C.L.M.J.VERLINDE,W.C.VAN VOORHIS,E.FAN REMARK 1 TITL POTENT AND SELECTIVE INHIBITORS OF CDPK1 FROM T. GONDII AND REMARK 1 TITL 2 C. PARVUM BASED ON A 5-AMINOPYRAZOLE-4-CARBOXAMIDE SCAFFOLD REMARK 1 REF ACS MED.CHEM.LETT. V. 5 40 2014 REMARK 1 REFN ISSN 1948-5875 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 11891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 610 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 884 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.52000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : 2.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.68000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.384 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.329 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.625 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3803 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3660 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5128 ; 1.598 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8446 ; 0.854 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 6.017 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;37.567 ;24.804 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;17.730 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.313 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4366 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 844 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 1.358 ; 2.636 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1854 ; 1.357 ; 2.636 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2318 ; 2.330 ; 3.950 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0893 -19.5327 -40.6823 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.2888 REMARK 3 T33: 0.1710 T12: 0.0466 REMARK 3 T13: -0.1273 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 4.8491 L22: 7.6297 REMARK 3 L33: 4.3765 L12: 2.9502 REMARK 3 L13: 1.5210 L23: 2.0972 REMARK 3 S TENSOR REMARK 3 S11: -0.0988 S12: -0.0761 S13: 0.3515 REMARK 3 S21: -0.4841 S22: -0.0758 S23: 0.1360 REMARK 3 S31: -0.5059 S32: -0.0326 S33: 0.1746 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0611 -18.2851 -17.5657 REMARK 3 T TENSOR REMARK 3 T11: 0.0303 T22: 0.2224 REMARK 3 T33: 0.1458 T12: -0.0210 REMARK 3 T13: -0.0469 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 1.5603 L22: 2.4928 REMARK 3 L33: 3.6145 L12: 0.0853 REMARK 3 L13: 0.3902 L23: 1.3100 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: -0.1195 S13: -0.0691 REMARK 3 S21: 0.0856 S22: -0.1261 S23: 0.1134 REMARK 3 S31: 0.1893 S32: -0.2674 S33: 0.0529 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8765 -6.8887 -33.3185 REMARK 3 T TENSOR REMARK 3 T11: 0.0725 T22: 0.3105 REMARK 3 T33: 0.3083 T12: -0.0384 REMARK 3 T13: -0.0302 T23: -0.0721 REMARK 3 L TENSOR REMARK 3 L11: 1.7460 L22: 2.2400 REMARK 3 L33: 3.1614 L12: -0.0149 REMARK 3 L13: 0.6917 L23: -0.3158 REMARK 3 S TENSOR REMARK 3 S11: -0.1346 S12: 0.1602 S13: 0.0775 REMARK 3 S21: -0.3481 S22: -0.0289 S23: 0.1501 REMARK 3 S31: -0.0964 S32: -0.1197 S33: 0.1634 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 380 A 412 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8479 -11.2350 -50.8038 REMARK 3 T TENSOR REMARK 3 T11: 0.5870 T22: 0.4723 REMARK 3 T33: 0.6643 T12: 0.0620 REMARK 3 T13: -0.0626 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 8.7454 L22: 6.0196 REMARK 3 L33: 7.5390 L12: 2.5300 REMARK 3 L13: 2.9342 L23: 2.4356 REMARK 3 S TENSOR REMARK 3 S11: 0.3762 S12: -0.2257 S13: -0.5620 REMARK 3 S21: 0.4035 S22: -0.1524 S23: -0.6927 REMARK 3 S31: 0.0323 S32: 0.5475 S33: -0.2238 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 413 A 441 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2057 -6.9096 -47.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.9029 T22: 0.6602 REMARK 3 T33: 0.7198 T12: 0.0832 REMARK 3 T13: -0.1138 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.5239 L22: 2.9243 REMARK 3 L33: 8.9481 L12: 1.9525 REMARK 3 L13: -0.9774 L23: 2.5429 REMARK 3 S TENSOR REMARK 3 S11: 0.1633 S12: -0.0114 S13: 0.5388 REMARK 3 S21: -0.0079 S22: -0.4854 S23: 0.6373 REMARK 3 S31: 0.4475 S32: -0.8362 S33: 0.3222 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 442 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6486 2.7004 -20.4144 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: 0.2182 REMARK 3 T33: 0.2136 T12: -0.0067 REMARK 3 T13: -0.0549 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 6.7133 L22: 3.2653 REMARK 3 L33: 7.2628 L12: 1.4423 REMARK 3 L13: -2.4811 L23: -1.0474 REMARK 3 S TENSOR REMARK 3 S11: 0.1404 S12: -0.1831 S13: 0.7141 REMARK 3 S21: -0.0386 S22: 0.1848 S23: 0.1326 REMARK 3 S31: -0.5292 S32: 0.0022 S33: -0.3252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4YJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 72.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.21500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 1.74900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ONA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.275 M AMMONIUM REMARK 280 CITRATE, 5 MM DTT, 2 MM UW1639, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.32000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 MET A 28 REMARK 465 MET A 29 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 GLN A 315 REMARK 465 ILE A 316 REMARK 465 SER A 317 REMARK 465 VAL A 318 REMARK 465 ASP A 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 266 CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 ASP A 415 CG OD1 OD2 REMARK 470 PHE A 416 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 85 O LYS A 391 1.83 REMARK 500 OD1 ASP A 394 OG SER A 396 1.86 REMARK 500 OD1 ASP A 412 NZ LYS A 418 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -17.88 80.91 REMARK 500 ARG A 173 -39.12 80.16 REMARK 500 GLU A 270 37.53 -98.53 REMARK 500 LEU A 289 33.39 -98.25 REMARK 500 LYS A 391 -81.84 -80.33 REMARK 500 MET A 397 54.64 -100.18 REMARK 500 ASP A 473 137.11 -38.44 REMARK 500 VAL A 484 -70.38 -72.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UW4 A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ONA RELATED DB: PDB DBREF 4YJN A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507 SEQADV 4YJN GLY A 24 UNP Q9BJF5 EXPRESSION TAG SEQADV 4YJN PRO A 25 UNP Q9BJF5 EXPRESSION TAG SEQADV 4YJN GLY A 26 UNP Q9BJF5 EXPRESSION TAG SEQADV 4YJN SER A 27 UNP Q9BJF5 EXPRESSION TAG SEQADV 4YJN MET A 28 UNP Q9BJF5 EXPRESSION TAG SEQADV 4YJN MET A 29 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 484 GLY PRO GLY SER MET MET ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MET HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER MET ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MET ARG MET LYS GLY GLN ASP ALA SER MET LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN HET UW4 A 601 28 HETNAM UW4 5-AMINO-1-TERT-BUTYL-3-[2-(CYCLOBUTYLOXY)QUINOLIN-6- HETNAM 2 UW4 YL]-1H-PYRAZOLE-4-CARBOXAMIDE FORMUL 2 UW4 C21 H25 N5 O2 FORMUL 3 HOH *29(H2 O) HELIX 1 AA1 ILE A 46 ARG A 50 1 5 HELIX 2 AA2 ASP A 92 LEU A 106 1 15 HELIX 3 AA3 GLU A 135 SER A 142 1 8 HELIX 4 AA4 SER A 147 ASN A 168 1 22 HELIX 5 AA5 LYS A 176 GLU A 178 5 3 HELIX 6 AA6 GLY A 197 PHE A 202 1 6 HELIX 7 AA7 LYS A 207 ILE A 212 1 6 HELIX 8 AA8 ALA A 219 GLY A 225 1 7 HELIX 9 AA9 LYS A 230 GLY A 246 1 17 HELIX 10 AB1 ASN A 254 GLY A 265 1 12 HELIX 11 AB2 LEU A 271 VAL A 277 5 7 HELIX 12 AB3 SER A 278 LEU A 289 1 12 HELIX 13 AB4 VAL A 292 ARG A 296 5 5 HELIX 14 AB5 SER A 298 ASP A 304 1 7 HELIX 15 AB6 HIS A 305 THR A 312 1 8 HELIX 16 AB7 LEU A 323 ASP A 368 1 46 HELIX 17 AB8 ASP A 376 LYS A 391 1 16 HELIX 18 AB9 ASP A 399 VAL A 414 1 16 HELIX 19 AC1 TYR A 424 ASP A 451 1 28 HELIX 20 AC2 SER A 460 SER A 470 1 11 HELIX 21 AC3 ASP A 473 ASP A 485 1 13 HELIX 22 AC4 PHE A 494 LEU A 504 1 11 SHEET 1 AA1 5 TYR A 51 GLY A 60 0 SHEET 2 AA1 5 GLY A 63 ASP A 70 -1 O VAL A 65 N GLY A 58 SHEET 3 AA1 5 GLU A 76 SER A 83 -1 O CYS A 77 N CYS A 68 SHEET 4 AA1 5 TYR A 123 GLY A 128 -1 O LEU A 126 N LYS A 80 SHEET 5 AA1 5 LEU A 114 GLU A 119 -1 N PHE A 118 O TYR A 125 SHEET 1 AA2 2 LEU A 180 LEU A 182 0 SHEET 2 AA2 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 AA3 2 GLN A 374 LEU A 375 0 SHEET 2 AA3 2 ILE A 422 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 AA4 2 LYS A 457 SER A 459 0 SHEET 2 AA4 2 GLU A 491 ASP A 493 -1 O VAL A 492 N ILE A 458 SITE 1 AC1 14 LEU A 57 GLY A 58 VAL A 65 ALA A 78 SITE 2 AC1 14 MET A 112 LEU A 114 LEU A 126 GLU A 129 SITE 3 AC1 14 VAL A 130 TYR A 131 ASP A 195 PHE A 196 SITE 4 AC1 14 LEU A 198 HOH A 727 CRYST1 48.300 72.640 65.710 90.00 99.72 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020704 0.000000 0.003546 0.00000 SCALE2 0.000000 0.013767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015440 0.00000