HEADER PROTEIN TRANSPORT 04-MAR-15 4YK8 TITLE CRYSTAL STRUCTURE OF THE ATG101-ATG13 COMPLEX FROM FISSION YEAST COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEIOTICALLY UP-REGULATED GENE 66 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN 101; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AUTOPHAGY PROTEIN 13; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 32-269; COMPND 10 SYNONYM: MEIOTICALLY UP-REGULATED GENE 78 PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: MUG66, ATG101, SPAC25H1.03; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 15 24843); SOURCE 16 ORGANISM_COMMON: FISSION YEAST; SOURCE 17 ORGANISM_TAXID: 284812; SOURCE 18 STRAIN: 972 / ATCC 24843; SOURCE 19 GENE: ATG13, MUG78, SPAC4F10.07C; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS AUTOPHAGY, HORMA, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR H.SUZUKI,N.N.NODA REVDAT 5 20-MAR-24 4YK8 1 REMARK REVDAT 4 05-FEB-20 4YK8 1 SOURCE REMARK REVDAT 3 22-JUL-15 4YK8 1 JRNL REVDAT 2 10-JUN-15 4YK8 1 JRNL REVDAT 1 03-JUN-15 4YK8 0 JRNL AUTH H.SUZUKI,T.KAIZUKA,N.MIZUSHIMA,N.N.NODA JRNL TITL STRUCTURE OF THE ATG101-ATG13 COMPLEX REVEALS ESSENTIAL JRNL TITL 2 ROLES OF ATG101 IN AUTOPHAGY INITIATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 572 2015 JRNL REFN ESSN 1545-9985 JRNL PMID 26030876 JRNL DOI 10.1038/NSMB.3036 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3348694.600 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 10666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 562 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1691 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 74 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.045 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2643 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.79000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : 11.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 32.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.54 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.49 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.920 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.650 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.020 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.720 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.700 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 77.61 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR/PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR/DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR/WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR/ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR/CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR/PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR/DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR/WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR/ION.TOP REMARK 3 TOPOLOGY FILE 5 : CNS_TOPPAR/CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4YK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 1.0070 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11052 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 43.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM CHLORIDE, 0.1M TRIS-HCL PH REMARK 280 8.0, 0.2% D-FRUCTOSE 1,6-DIPHOSPHATE TRISODIUM SALT OCTAHYDRATE, REMARK 280 0.2% GLYCEROL PHOSPHATE DISODIUM SALT HYDRATE, 0.2% L-O- REMARK 280 PHOSPHOSERINE, 0.2% PHYTIC ACID SODIUM SALT HYDRATE, 0.02 M REMARK 280 HEPES SODIUM PH 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.91100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.69450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.91100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.69450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 75 REMARK 465 GLY A 76 REMARK 465 PRO A 162 REMARK 465 THR A 163 REMARK 465 SER A 164 REMARK 465 THR A 165 REMARK 465 GLU A 166 REMARK 465 GLY A 167 REMARK 465 TRP A 168 REMARK 465 GLY A 169 REMARK 465 SER A 170 REMARK 465 LEU A 171 REMARK 465 LEU A 172 REMARK 465 LYS A 173 REMARK 465 ARG A 174 REMARK 465 MET A 175 REMARK 465 ILE A 176 REMARK 465 ILE A 177 REMARK 465 GLU A 178 REMARK 465 ASN A 179 REMARK 465 VAL A 180 REMARK 465 SER A 181 REMARK 465 GLY A 182 REMARK 465 GLY A 183 REMARK 465 ASP A 184 REMARK 465 GLY B 28 REMARK 465 PRO B 29 REMARK 465 HIS B 30 REMARK 465 MET B 31 REMARK 465 SER B 32 REMARK 465 VAL B 33 REMARK 465 VAL B 62 REMARK 465 PHE B 63 REMARK 465 GLY B 64 REMARK 465 THR B 65 REMARK 465 SER B 66 REMARK 465 ARG B 67 REMARK 465 PRO B 68 REMARK 465 ARG B 69 REMARK 465 LYS B 122 REMARK 465 ASN B 123 REMARK 465 GLN B 124 REMARK 465 THR B 125 REMARK 465 LEU B 126 REMARK 465 SER B 127 REMARK 465 VAL B 128 REMARK 465 SER B 129 REMARK 465 ASP B 130 REMARK 465 GLY B 131 REMARK 465 THR B 132 REMARK 465 HIS B 133 REMARK 465 SER B 134 REMARK 465 HIS B 135 REMARK 465 ALA B 136 REMARK 465 ILE B 137 REMARK 465 ASN B 138 REMARK 465 PHE B 139 REMARK 465 ASN B 140 REMARK 465 ASN B 141 REMARK 465 MET B 142 REMARK 465 SER B 143 REMARK 465 THR B 144 REMARK 465 MET B 145 REMARK 465 PRO B 164 REMARK 465 LEU B 165 REMARK 465 GLY B 204 REMARK 465 THR B 205 REMARK 465 SER B 206 REMARK 465 VAL B 218 REMARK 465 LEU B 219 REMARK 465 ILE B 230 REMARK 465 SER B 231 REMARK 465 ASP B 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 ASN A 99 CG OD1 ND2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 160 CG1 CG2 REMARK 470 ASN B 61 CG OD1 ND2 REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 ILE B 82 CG1 CG2 CD1 REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 ILE B 94 CG1 CG2 CD1 REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 SER B 101 OG REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 ILE B 117 CG1 CG2 CD1 REMARK 470 SER B 118 OG REMARK 470 ASP B 119 CG OD1 OD2 REMARK 470 LEU B 120 CG CD1 CD2 REMARK 470 SER B 121 OG REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 LEU B 161 CG CD1 CD2 REMARK 470 SER B 162 OG REMARK 470 THR B 163 OG1 CG2 REMARK 470 GLU B 166 CG CD OE1 OE2 REMARK 470 LEU B 167 CG CD1 CD2 REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 SER B 195 OG REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 ILE B 197 CG1 CG2 CD1 REMARK 470 HIS B 198 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 LEU B 200 CG CD1 CD2 REMARK 470 ARG B 201 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 203 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 LEU B 213 CG CD1 CD2 REMARK 470 THR B 215 OG1 CG2 REMARK 470 ASP B 216 CG OD1 OD2 REMARK 470 SER B 220 OG REMARK 470 PHE B 223 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 227 OG REMARK 470 SER B 232 OG REMARK 470 SER B 233 OG REMARK 470 LEU B 234 CG CD1 CD2 REMARK 470 SER B 236 OG REMARK 470 SER B 237 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 145 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 CYS B 47 CA - CB - SG ANGL. DEV. = 11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 34 151.38 -48.24 REMARK 500 LEU A 44 -130.00 65.43 REMARK 500 LEU A 139 -117.37 -119.73 REMARK 500 ARG A 140 72.77 -103.64 REMARK 500 SER A 141 -53.88 -139.64 REMARK 500 PRO B 102 137.22 -36.44 REMARK 500 SER B 103 13.03 92.00 REMARK 500 ILE B 117 49.31 -94.42 REMARK 500 LEU B 149 -66.62 -92.63 REMARK 500 GLU B 159 -90.50 -77.28 REMARK 500 LYS B 208 144.81 -175.83 REMARK 500 SER B 214 147.38 -174.33 REMARK 500 LEU B 224 106.07 -56.75 REMARK 500 PRO B 225 -175.81 -60.54 REMARK 500 SER B 236 84.19 61.47 REMARK 500 PRO B 249 12.11 -67.32 REMARK 500 CYS B 263 115.74 -162.37 REMARK 500 PHE B 265 -125.25 56.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 4YK8 A 1 184 UNP O13978 MUG66_SCHPO 1 184 DBREF 4YK8 B 32 269 UNP O36019 ATG13_SCHPO 32 269 SEQADV 4YK8 GLY A -2 UNP O13978 EXPRESSION TAG SEQADV 4YK8 PRO A -1 UNP O13978 EXPRESSION TAG SEQADV 4YK8 HIS A 0 UNP O13978 EXPRESSION TAG SEQADV 4YK8 GLY B 28 UNP O36019 EXPRESSION TAG SEQADV 4YK8 PRO B 29 UNP O36019 EXPRESSION TAG SEQADV 4YK8 HIS B 30 UNP O36019 EXPRESSION TAG SEQADV 4YK8 MET B 31 UNP O36019 EXPRESSION TAG SEQRES 1 A 187 GLY PRO HIS MET THR ASN THR VAL THR ILE GLU LEU LYS SEQRES 2 A 187 ILE GLY TYR LYS TYR ALA ALA GLU VAL VAL LYS ALA VAL SEQRES 3 A 187 LEU GLY VAL ILE LEU PHE HIS ARG GLN PHE SER THR VAL SEQRES 4 A 187 PRO ALA ARG THR ILE ASP VAL LEU ASP ILE THR VAL PRO SEQRES 5 A 187 THR LEU VAL GLY ALA GLU LEU ASN GLU GLN LEU ALA THR SEQRES 6 A 187 LYS ALA ALA GLU PHE ILE ASP THR ILE ARG ASN GLU ALA SEQRES 7 A 187 GLY ALA ASN GLY GLN MET ILE LEU LEU LEU TYR GLU ARG SEQRES 8 A 187 SER PRO LYS LYS SER TRP PHE GLY LYS GLY ASN THR ILE SEQRES 9 A 187 PRO TRP GLU GLN TRP ILE LEU HIS THR THR ILE LEU GLU SEQRES 10 A 187 GLU GLY ASP SER TYR GLN GLU SER SER LEU SER LEU GLU SEQRES 11 A 187 ALA ALA VAL GLU GLN ILE VAL GLN ALA VAL ASN LEU ARG SEQRES 12 A 187 SER LEU SER TYR LEU PRO PRO VAL ALA MET ASP SER GLY SEQRES 13 A 187 ASN TYR PRO TYR GLU ILE VAL THR PRO THR SER THR GLU SEQRES 14 A 187 GLY TRP GLY SER LEU LEU LYS ARG MET ILE ILE GLU ASN SEQRES 15 A 187 VAL SER GLY GLY ASP SEQRES 1 B 242 GLY PRO HIS MET SER VAL GLY GLY ARG SER ALA LYS LEU SEQRES 2 B 242 GLY GLN VAL ILE HIS HIS CYS PHE TYR LYS THR GLY LEU SEQRES 3 B 242 ILE ILE LEU GLU SER ARG LEU ASN VAL PHE GLY THR SER SEQRES 4 B 242 ARG PRO ARG GLU SER SER LYS ASN ASN LYS TRP PHE ASN SEQRES 5 B 242 LEU GLU ILE VAL GLU THR GLU LEU TYR ALA GLU GLN PHE SEQRES 6 B 242 LYS ILE TRP LYS ASN ILE GLU LEU SER PRO SER ARG LYS SEQRES 7 B 242 ILE PRO PRO MET VAL LEU HIS THR TYR LEU ASP ILE SER SEQRES 8 B 242 ASP LEU SER LYS ASN GLN THR LEU SER VAL SER ASP GLY SEQRES 9 B 242 THR HIS SER HIS ALA ILE ASN PHE ASN ASN MET SER THR SEQRES 10 B 242 MET LYS ILE VAL LEU GLU ARG TRP ILE VAL ASN LEU ASP SEQRES 11 B 242 GLY GLU ALA LEU SER THR PRO LEU GLU LEU ALA VAL LEU SEQRES 12 B 242 TYR LYS LYS LEU VAL VAL LEU PHE ARG SER LEU TYR THR SEQRES 13 B 242 TYR THR HIS LEU MET PRO LEU TRP LYS LEU LYS SER LYS SEQRES 14 B 242 ILE HIS LYS LEU ARG ALA HIS GLY THR SER LEU LYS VAL SEQRES 15 B 242 GLY CYS ALA LEU SER THR ASP ASP VAL LEU SER ASN ASP SEQRES 16 B 242 PHE LEU PRO ILE SER ALA PRO ILE SER SER SER LEU GLY SEQRES 17 B 242 SER SER ILE ALA THR PHE SER PHE SER PRO VAL GLY THR SEQRES 18 B 242 PRO ALA GLY ASP PHE ARG ILE SER VAL GLN TYR ARG LYS SEQRES 19 B 242 ASN CYS HIS PHE GLU VAL HIS ASP HELIX 1 AA1 TYR A 15 HIS A 30 1 16 HELIX 2 AA2 GLY A 53 GLU A 74 1 22 HELIX 3 AA3 SER A 89 TRP A 94 1 6 HELIX 4 AA4 SER A 118 ASN A 138 1 21 HELIX 5 AA5 GLY B 35 SER B 58 1 24 HELIX 6 AA6 LYS B 76 PHE B 78 5 3 HELIX 7 AA7 THR B 85 ILE B 98 1 14 HELIX 8 AA8 LEU B 167 HIS B 186 1 20 HELIX 9 AA9 MET B 188 LEU B 200 1 13 SHEET 1 AA1 4 ASN A 3 GLY A 12 0 SHEET 2 AA1 4 GLU A 104 LEU A 113 1 O HIS A 109 N LEU A 9 SHEET 3 AA1 4 ASN A 78 LEU A 85 -1 N MET A 81 O LEU A 108 SHEET 4 AA1 4 TYR A 157 VAL A 160 -1 O GLU A 158 N LEU A 84 SHEET 1 AA2 2 VAL A 36 PRO A 37 0 SHEET 2 AA2 2 LEU B 80 GLU B 81 1 O GLU B 81 N VAL A 36 SHEET 1 AA3 2 THR A 40 VAL A 43 0 SHEET 2 AA3 2 ILE A 46 PRO A 49 -1 O VAL A 48 N ILE A 41 SHEET 1 AA4 5 CYS B 211 SER B 214 0 SHEET 2 AA4 5 MET B 109 THR B 113 -1 N HIS B 112 O ALA B 212 SHEET 3 AA4 5 GLU B 150 ASP B 157 -1 O VAL B 154 N MET B 109 SHEET 4 AA4 5 GLY B 251 ARG B 260 -1 O SER B 256 N ILE B 153 SHEET 5 AA4 5 ILE B 238 SER B 242 -1 N ALA B 239 O TYR B 259 SHEET 1 AA5 5 CYS B 211 SER B 214 0 SHEET 2 AA5 5 MET B 109 THR B 113 -1 N HIS B 112 O ALA B 212 SHEET 3 AA5 5 GLU B 150 ASP B 157 -1 O VAL B 154 N MET B 109 SHEET 4 AA5 5 GLY B 251 ARG B 260 -1 O SER B 256 N ILE B 153 SHEET 5 AA5 5 VAL B 246 THR B 248 -1 N VAL B 246 O PHE B 253 CRYST1 73.822 83.389 91.113 90.00 106.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013546 0.000000 0.003942 0.00000 SCALE2 0.000000 0.011992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011431 0.00000