HEADER HYDROLASE 09-MAR-15 4YN5 TITLE CATALYTIC DOMAIN OF BACILLUS SP. JAMB-750 GH26 ENDO-BETA-1,4-MANNANASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNAN ENDO-1,4-BETA-MANNOSIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-432; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. JAMB750; SOURCE 3 ORGANISM_TAXID: 253629; SOURCE 4 GENE: MAN26A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET-A KEYWDS GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHIMANE,Y.OHTA,R.USAMI,Y.HATADA REVDAT 3 20-MAR-24 4YN5 1 REMARK REVDAT 2 29-JAN-20 4YN5 1 JRNL REMARK REVDAT 1 09-MAR-16 4YN5 0 JRNL AUTH Y.SHIMANE,N.TAKEDA,Y.OHTA,T.KUMASAKA,S.SHIMAMURA, JRNL AUTH 2 H.MINEGISHI,R.USAMI,Y.HATADA JRNL TITL CRYSTAL STRUCTURE OF BACILLUS SP. JAMB-750 GH26 JRNL TITL 2 ENDO-BETA-1,4-MANNANASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 34223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1800 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2618 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3098 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.724 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3208 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4375 ; 1.623 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 6.413 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;38.755 ;25.172 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 480 ;14.693 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2564 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1593 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2187 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 260 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.798 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1990 ; 1.019 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3118 ; 1.506 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1417 ; 2.612 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1254 ; 3.724 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36155 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5% (W/V) PEG 8000, 0.1 M SODIUM REMARK 280 CACODYLATE, 0.2 M SODIUM ACETATE, PH 6.9, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.52400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.26200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.89300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 7.63100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.15500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ARG A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 MET A 5 REMARK 465 THR A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 GLN A 9 REMARK 465 GLN A 10 REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 ARG A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 TYR A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 ASP A 19 REMARK 465 ASP A 20 REMARK 465 LYS A 21 REMARK 465 ASP A 22 REMARK 465 ARG A 23 REMARK 465 TRP A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 GLU A 27 REMARK 465 SER A 28 REMARK 465 LYS A 29 REMARK 465 GLU A 421 REMARK 465 GLN A 422 REMARK 465 GLU A 423 REMARK 465 PRO A 424 REMARK 465 PHE A 425 REMARK 465 MET A 426 REMARK 465 HIS A 427 REMARK 465 ILE A 428 REMARK 465 VAL A 429 REMARK 465 THR A 430 REMARK 465 PRO A 431 REMARK 465 THR A 432 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 647 O HOH A 652 1.35 REMARK 500 O HOH A 606 O HOH A 634 1.43 REMARK 500 O HOH A 656 O HOH A 743 1.50 REMARK 500 OE2 GLU A 398 O HOH A 695 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 602 O HOH A 616 3565 1.15 REMARK 500 O HOH A 605 O HOH A 632 6654 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 390 CB - CG - CD2 ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 287 -167.33 -78.69 REMARK 500 ASN A 291 67.05 -150.58 REMARK 500 LYS A 317 -169.12 -116.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 501 DBREF 4YN5 A 27 432 UNP Q2ACI1 Q2ACI1_9BACI 27 432 SEQADV 4YN5 MET A -9 UNP Q2ACI1 INITIATING METHIONINE SEQADV 4YN5 ARG A -8 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 GLY A -7 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 SER A -6 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 HIS A -5 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 HIS A -4 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 HIS A -3 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 HIS A -2 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 HIS A -1 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 HIS A 0 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 GLY A 1 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 MET A 2 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 ALA A 3 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 SER A 4 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 MET A 5 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 THR A 6 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 GLY A 7 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 GLY A 8 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 GLN A 9 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 GLN A 10 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 MET A 11 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 GLY A 12 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 ARG A 13 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 ASP A 14 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 LEU A 15 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 TYR A 16 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 ASP A 17 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 ASP A 18 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 ASP A 19 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 ASP A 20 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 LYS A 21 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 ASP A 22 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 ARG A 23 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 TRP A 24 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 GLY A 25 UNP Q2ACI1 EXPRESSION TAG SEQADV 4YN5 SER A 26 UNP Q2ACI1 EXPRESSION TAG SEQRES 1 A 442 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 442 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 442 ASP ASP ASP ASP LYS ASP ARG TRP GLY SER GLU SER LYS SEQRES 4 A 442 ILE PRO LYS ASP SER GLU GLY GLN SER PHE LYS LEU VAL SEQRES 5 A 442 ASP SER ASN ALA SER THR LEU THR LYS SER LEU TYR ALA SEQRES 6 A 442 TYR LEU GLN ASP THR SER GLY ARG GLN ILE LEU PHE GLY SEQRES 7 A 442 HIS GLN HIS ALA VAL ASP GLU GLY LEU THR LEU THR ASN SEQRES 8 A 442 SER GLY ASP ARG VAL GLY SER THR GLN SER GLU VAL LYS SEQRES 9 A 442 ASN ALA VAL GLY ASP TYR PRO ALA ILE PHE GLY TRP ASP SEQRES 10 A 442 THR LEU SER LEU ASP GLY TYR GLU LYS PRO GLY ASN GLU SEQRES 11 A 442 LYS ASN SER GLN ALA GLN ASN ARG ALA ASN VAL VAL GLN SEQRES 12 A 442 SER MET ARG THR VAL HIS GLU LEU GLY GLY ILE ILE ALA SEQRES 13 A 442 LEU SER MET HIS PRO GLU ASN PHE VAL THR GLY ASN GLN SEQRES 14 A 442 TYR ASN ASP THR SER GLY ASP VAL VAL LYS ASN ILE LEU SEQRES 15 A 442 PRO ASP GLY SER HIS HIS GLU VAL PHE ASN ALA TRP LEU SEQRES 16 A 442 ASP ASN ILE ALA ALA PHE ALA HIS GLU LEU THR ASP GLN SEQRES 17 A 442 SER THR GLY GLU LEU ILE PRO VAL ILE PHE ARG PRO PHE SEQRES 18 A 442 HIS GLU GLN ASN GLY GLY TRP PHE TRP TRP GLY ALA GLN SEQRES 19 A 442 THR THR THR ALA SER GLU TYR LYS ALA LEU TYR ARG TYR SEQRES 20 A 442 THR VAL ASP TYR LEU ARG ASP VAL LYS GLY VAL ASN ASN SEQRES 21 A 442 PHE LEU TYR ALA PHE SER PRO ASN ALA PRO PHE ASP GLY SEQRES 22 A 442 ASN LEU THR GLN TYR LEU ARG THR TYR PRO GLY ASP GLN SEQRES 23 A 442 TYR VAL ASP ILE PHE GLY LEU ASP GLN TYR ASP ASN LYS SEQRES 24 A 442 ALA ASN ALA GLY GLN ALA THR PHE LEU ASN GLY LEU THR SEQRES 25 A 442 GLN ASP LEU ALA MET ILE SER LYS LEU ALA ASP GLU LYS SEQRES 26 A 442 GLY LYS ILE ALA ALA PHE THR GLU TYR GLY TYR SER PRO SEQRES 27 A 442 GLN GLY PHE ASN GLU THR GLY ASN TYR LEU GLN TRP TYR SEQRES 28 A 442 THR ALA VAL LEU GLU ALA ILE LYS LYS ASP PRO ASN ALA SEQRES 29 A 442 SER ARG ILE ALA TYR MET GLN THR TRP ALA ASN PHE GLY SEQRES 30 A 442 TYR PRO THR ASN MET PHE VAL PRO TYR ARG ASP VAL ASN SEQRES 31 A 442 GLY ASN LEU GLY GLY ASP HIS GLU LEU LEU PRO ASN PHE SEQRES 32 A 442 VAL GLU PHE TYR GLU ASP ASP TYR ALA ALA PHE LEU THR SEQRES 33 A 442 GLU ALA SER GLY TRP ASN LEU TYR GLN ASP ILE SER THR SEQRES 34 A 442 ILE GLU GLN GLU PRO PHE MET HIS ILE VAL THR PRO THR HET CAC A 501 5 HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 2 CAC C2 H6 AS O2 1- FORMUL 3 HOH *238(H2 O) HELIX 1 AA1 SER A 47 SER A 61 1 15 HELIX 2 AA2 SER A 91 GLY A 98 1 8 HELIX 3 AA3 LEU A 109 LEU A 111 5 3 HELIX 4 AA4 SER A 123 GLY A 142 1 20 HELIX 5 AA5 ASP A 166 LEU A 172 1 7 HELIX 6 AA6 HIS A 177 LEU A 195 1 19 HELIX 7 AA7 THR A 227 ASP A 244 1 18 HELIX 8 AA8 ASN A 264 ARG A 270 1 7 HELIX 9 AA9 GLY A 274 VAL A 278 5 5 HELIX 10 AB1 GLN A 294 GLY A 316 1 23 HELIX 11 AB2 GLN A 339 LYS A 350 1 12 HELIX 12 AB3 ASN A 353 ILE A 357 5 5 HELIX 13 AB4 LEU A 389 ASP A 399 1 11 HELIX 14 AB5 LEU A 405 SER A 409 5 5 SHEET 1 AA1 2 SER A 38 PHE A 39 0 SHEET 2 AA1 2 SER A 418 THR A 419 1 O SER A 418 N PHE A 39 SHEET 1 AA210 ALA A 402 ALA A 403 0 SHEET 2 AA210 ILE A 65 GLN A 70 1 N PHE A 67 O ALA A 403 SHEET 3 AA210 TYR A 359 THR A 362 1 O MET A 360 N GLY A 68 SHEET 4 AA210 ILE A 318 GLY A 325 1 N PHE A 321 O TYR A 359 SHEET 5 AA210 ILE A 280 TYR A 286 1 N PHE A 281 O ILE A 318 SHEET 6 AA210 PHE A 251 PHE A 255 1 N PHE A 255 O GLY A 282 SHEET 7 AA210 VAL A 206 ARG A 209 1 N PHE A 208 O LEU A 252 SHEET 8 AA210 ILE A 144 SER A 148 1 N LEU A 147 O ILE A 207 SHEET 9 AA210 ILE A 103 ASP A 107 1 N PHE A 104 O ILE A 144 SHEET 10 AA210 ILE A 65 GLN A 70 1 N HIS A 69 O GLY A 105 CISPEP 1 LYS A 116 PRO A 117 0 -0.73 CISPEP 2 ALA A 259 PRO A 260 0 1.59 CISPEP 3 TYR A 368 PRO A 369 0 2.19 SITE 1 AC1 7 HIS A 150 HIS A 212 GLU A 213 PHE A 219 SITE 2 AC1 7 GLU A 323 TRP A 363 HOH A 777 CRYST1 124.403 124.403 45.786 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008038 0.004641 0.000000 0.00000 SCALE2 0.000000 0.009282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021841 0.00000