HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-MAR-15 4YNE TITLE (R)-2-PHENYLPYRROLIDINE SUBSTITUTE IMIDAZOPYRIDAZINES: A NEW CLASS OF TITLE 2 POTENT AND SELECTIVE PAN-TRK INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEUROTROPHIC TYROSINE KINASE RECEPTOR TYPE 1,TRK1- COMPND 5 TRANSFORMING TYROSINE KINASE PROTEIN,TROPOMYOSIN-RELATED KINASE A, COMPND 6 TYROSINE KINASE RECEPTOR,TYROSINE KINASE RECEPTOR A,TRK-A,GP140TRK, COMPND 7 P140-TRKA; COMPND 8 EC: 2.7.10.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NTRK1, MTC, TRK, TRKA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1-HM KEYWDS KINASE, TRK, INHIBITOR, ONCOLOGY, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KREUSCH,P.RUCKER,V.MOLTENI,J.LOREN REVDAT 2 27-SEP-23 4YNE 1 SOURCE REMARK REVDAT 1 03-JUN-15 4YNE 0 JRNL AUTH H.S.CHOI,P.V.RUCKER,Z.WANG,Y.FAN,P.ALBAUGH,G.CHOPIUK, JRNL AUTH 2 F.GESSIER,F.SUN,F.ADRIAN,G.LIU,T.HOOD,N.LI,Y.JIA,J.CHE, JRNL AUTH 3 S.MCCORMACK,A.LI,J.LI,A.STEFFY,A.CULAZZO,C.TOMPKINS,V.PHUNG, JRNL AUTH 4 A.KREUSCH,M.LU,B.HU,A.CHAUDHARY,M.PRASHAD,T.TUNTLAND,B.LIU, JRNL AUTH 5 J.HARRIS,H.M.SEIDEL,J.LOREN,V.MOLTENI JRNL TITL (R)-2-PHENYLPYRROLIDINE SUBSTITUTED IMIDAZOPYRIDAZINES: A JRNL TITL 2 NEW CLASS OF POTENT AND SELECTIVE PAN-TRK INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 6 562 2015 JRNL REFN ISSN 1948-5875 JRNL PMID 26005534 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00050 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1000 - 4.4957 0.99 2617 116 0.1734 0.2204 REMARK 3 2 4.4957 - 3.5696 1.00 2548 126 0.1586 0.1623 REMARK 3 3 3.5696 - 3.1187 1.00 2501 148 0.1901 0.2184 REMARK 3 4 3.1187 - 2.8337 1.00 2512 139 0.1934 0.2379 REMARK 3 5 2.8337 - 2.6307 1.00 2519 126 0.2013 0.2605 REMARK 3 6 2.6307 - 2.4757 1.00 2443 149 0.1931 0.2156 REMARK 3 7 2.4757 - 2.3517 1.00 2483 128 0.1982 0.2833 REMARK 3 8 2.3517 - 2.2493 1.00 2477 138 0.2089 0.2304 REMARK 3 9 2.2493 - 2.1628 1.00 2491 143 0.2150 0.2532 REMARK 3 10 2.1628 - 2.0882 1.00 2457 126 0.2305 0.2481 REMARK 3 11 2.0882 - 2.0229 0.99 2475 135 0.2562 0.2874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2314 REMARK 3 ANGLE : 1.057 3141 REMARK 3 CHIRALITY : 0.050 335 REMARK 3 PLANARITY : 0.005 399 REMARK 3 DIHEDRAL : 13.982 816 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -25.6387 -42.9463 -19.4055 REMARK 3 T TENSOR REMARK 3 T11: 0.3802 T22: 0.2920 REMARK 3 T33: 0.2725 T12: 0.0466 REMARK 3 T13: 0.0393 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 4.2519 L22: 1.9296 REMARK 3 L33: 4.0990 L12: 0.7625 REMARK 3 L13: 0.8591 L23: 0.1315 REMARK 3 S TENSOR REMARK 3 S11: -0.2090 S12: -0.0792 S13: 0.0846 REMARK 3 S21: -0.1791 S22: -0.0313 S23: 0.0772 REMARK 3 S31: -0.3414 S32: 0.1636 S33: 0.1902 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 34.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.57500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3V5Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M (NH4)2SO4, 0.1M CITRATE PH 5.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 52.87350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.52653 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 68.22800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 52.87350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.52653 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 68.22800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 52.87350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.52653 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.22800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 52.87350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.52653 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.22800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 52.87350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.52653 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 68.22800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 52.87350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.52653 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.22800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.05306 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 136.45600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 61.05306 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 136.45600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 61.05306 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 136.45600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 61.05306 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 136.45600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 61.05306 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 136.45600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 61.05306 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 136.45600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 ALA A -6 REMARK 465 MET A -5 REMARK 465 GLU A 535 REMARK 465 GLN A 536 REMARK 465 ALA A 549 REMARK 465 SER A 550 REMARK 465 GLU A 551 REMARK 465 SER A 552 REMARK 465 ALA A 553 REMARK 465 SER A 672 REMARK 465 ARG A 673 REMARK 465 ASP A 674 REMARK 465 ILE A 675 REMARK 465 TYR A 676 REMARK 465 VAL A 683 REMARK 465 GLY A 684 REMARK 465 GLY A 685 REMARK 465 ARG A 686 REMARK 465 VAL A 794 REMARK 465 LEU A 795 REMARK 465 GLY A 796 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 506 CG CD CE NZ REMARK 470 ASP A 537 CG OD1 OD2 REMARK 470 LYS A 538 CG CD CE NZ REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 GLU A 548 CG CD OE1 OE2 REMARK 470 ARG A 554 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 555 CG CD OE1 NE2 REMARK 470 ARG A 583 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 607 CG OD1 OD2 REMARK 470 LYS A 609 CG CD CE NZ REMARK 470 LEU A 611 CG CD1 CD2 REMARK 470 ARG A 702 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 750 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 769 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 532 -66.39 -91.27 REMARK 500 LYS A 547 -70.32 -59.96 REMARK 500 ASP A 650 53.77 -150.12 REMARK 500 ALA A 787 78.94 -151.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 949 DISTANCE = 6.40 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4EK A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 807 DBREF 4YNE A 502 796 UNP P04629 NTRK1_HUMAN 502 796 SEQADV 4YNE GLY A -7 UNP P04629 EXPRESSION TAG SEQADV 4YNE ALA A -6 UNP P04629 EXPRESSION TAG SEQADV 4YNE MET A -5 UNP P04629 EXPRESSION TAG SEQADV 4YNE GLY A -4 UNP P04629 EXPRESSION TAG SEQADV 4YNE SER A -3 UNP P04629 EXPRESSION TAG SEQADV 4YNE GLY A -2 UNP P04629 EXPRESSION TAG SEQADV 4YNE ILE A -1 UNP P04629 EXPRESSION TAG SEQADV 4YNE ARG A 0 UNP P04629 EXPRESSION TAG SEQRES 1 A 303 GLY ALA MET GLY SER GLY ILE ARG VAL HIS HIS ILE LYS SEQRES 2 A 303 ARG ARG ASP ILE VAL LEU LYS TRP GLU LEU GLY GLU GLY SEQRES 3 A 303 ALA PHE GLY LYS VAL PHE LEU ALA GLU CYS HIS ASN LEU SEQRES 4 A 303 LEU PRO GLU GLN ASP LYS MET LEU VAL ALA VAL LYS ALA SEQRES 5 A 303 LEU LYS GLU ALA SER GLU SER ALA ARG GLN ASP PHE GLN SEQRES 6 A 303 ARG GLU ALA GLU LEU LEU THR MET LEU GLN HIS GLN HIS SEQRES 7 A 303 ILE VAL ARG PHE PHE GLY VAL CYS THR GLU GLY ARG PRO SEQRES 8 A 303 LEU LEU MET VAL PHE GLU TYR MET ARG HIS GLY ASP LEU SEQRES 9 A 303 ASN ARG PHE LEU ARG SER HIS GLY PRO ASP ALA LYS LEU SEQRES 10 A 303 LEU ALA GLY GLY GLU ASP VAL ALA PRO GLY PRO LEU GLY SEQRES 11 A 303 LEU GLY GLN LEU LEU ALA VAL ALA SER GLN VAL ALA ALA SEQRES 12 A 303 GLY MET VAL TYR LEU ALA GLY LEU HIS PHE VAL HIS ARG SEQRES 13 A 303 ASP LEU ALA THR ARG ASN CYS LEU VAL GLY GLN GLY LEU SEQRES 14 A 303 VAL VAL LYS ILE GLY ASP PHE GLY MET SER ARG ASP ILE SEQRES 15 A 303 TYR SER THR ASP TYR TYR ARG VAL GLY GLY ARG THR MET SEQRES 16 A 303 LEU PRO ILE ARG TRP MET PRO PRO GLU SER ILE LEU TYR SEQRES 17 A 303 ARG LYS PHE THR THR GLU SER ASP VAL TRP SER PHE GLY SEQRES 18 A 303 VAL VAL LEU TRP GLU ILE PHE THR TYR GLY LYS GLN PRO SEQRES 19 A 303 TRP TYR GLN LEU SER ASN THR GLU ALA ILE ASP CYS ILE SEQRES 20 A 303 THR GLN GLY ARG GLU LEU GLU ARG PRO ARG ALA CYS PRO SEQRES 21 A 303 PRO GLU VAL TYR ALA ILE MET ARG GLY CYS TRP GLN ARG SEQRES 22 A 303 GLU PRO GLN GLN ARG HIS SER ILE LYS ASP VAL HIS ALA SEQRES 23 A 303 ARG LEU GLN ALA LEU ALA GLN ALA PRO PRO VAL TYR LEU SEQRES 24 A 303 ASP VAL LEU GLY HET 4EK A 801 27 HET SO4 A 802 5 HET SO4 A 803 5 HET SO4 A 804 5 HET SO4 A 805 5 HET SO4 A 806 5 HET GOL A 807 6 HETNAM 4EK 6-[(2R)-2-(3-FLUOROPHENYL)PYRROLIDIN-1-YL]-3-(PYRIDIN- HETNAM 2 4EK 2-YL)IMIDAZO[1,2-B]PYRIDAZINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 4EK C21 H18 F N5 FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *78(H2 O) HELIX 1 AA1 LYS A 506 ARG A 508 5 3 HELIX 2 AA2 GLN A 555 LEU A 567 1 13 HELIX 3 AA3 ASP A 596 HIS A 604 1 9 HELIX 4 AA4 GLY A 623 LEU A 644 1 22 HELIX 5 AA5 ALA A 652 ARG A 654 5 3 HELIX 6 AA6 GLN A 660 LEU A 662 5 3 HELIX 7 AA7 PRO A 690 MET A 694 5 5 HELIX 8 AA8 PRO A 695 ARG A 702 1 8 HELIX 9 AA9 THR A 705 THR A 722 1 18 HELIX 10 AB1 SER A 732 GLY A 743 1 12 HELIX 11 AB2 PRO A 753 TRP A 764 1 12 HELIX 12 AB3 GLU A 767 ARG A 771 5 5 HELIX 13 AB4 SER A 773 ALA A 787 1 15 SHEET 1 AA1 5 ILE A 510 GLY A 519 0 SHEET 2 AA1 5 GLY A 522 CYS A 529 -1 O VAL A 524 N LEU A 516 SHEET 3 AA1 5 MET A 539 ALA A 545 -1 O VAL A 543 N PHE A 525 SHEET 4 AA1 5 LEU A 586 GLU A 590 -1 O PHE A 589 N ALA A 542 SHEET 5 AA1 5 PHE A 575 CYS A 579 -1 N PHE A 576 O VAL A 588 SHEET 1 AA2 2 CYS A 656 VAL A 658 0 SHEET 2 AA2 2 VAL A 664 ILE A 666 -1 O LYS A 665 N LEU A 657 CISPEP 1 HIS A 530 ASN A 531 0 -3.34 CISPEP 2 ARG A 583 PRO A 584 0 0.78 CISPEP 3 GLY A 613 GLY A 614 0 3.15 SITE 1 AC1 12 PHE A 521 ALA A 542 PHE A 589 GLU A 590 SITE 2 AC1 12 MET A 592 ARG A 654 ASN A 655 CYS A 656 SITE 3 AC1 12 LEU A 657 GLY A 667 ASP A 668 HOH A 930 SITE 1 AC2 4 THR A 722 LYS A 725 ARG A 750 HOH A 920 SITE 1 AC3 4 ARG A 0 HIS A 503 HIS A 504 HOH A 949 SITE 1 AC4 5 ARG A 602 ASP A 607 TYR A 723 LYS A 725 SITE 2 AC4 5 HOH A 973 SITE 1 AC5 3 GLN A 633 GLY A 661 LEU A 662 SITE 1 AC6 5 HIS A 571 SER A 632 GLN A 633 HIS A 778 SITE 2 AC6 5 GLN A 782 SITE 1 AC7 7 LYS A 544 GLU A 560 ASP A 668 PHE A 669 SITE 2 AC7 7 GLY A 670 MET A 671 HOH A 929 CRYST1 105.747 105.747 204.684 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009457 0.005460 0.000000 0.00000 SCALE2 0.000000 0.010919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004886 0.00000