HEADER SOLUTE BINDING PROTEIN 11-MAR-15 4YO7 TITLE CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN TITLE 2 (IPR025997) FROM BACILLUS HALODURANS C-125 (BH2323, TARGET EFI- TITLE 3 511484) WITH BOUND MYO-INOSITOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER (SUGAR-BINDING PROTEIN); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-323; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125; SOURCE 5 GENE: BH2323; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL GENOMICS, SOLUTE BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.YADAVA,M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH, AUTHOR 2 J.KOSS,S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA, AUTHOR 3 S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL,K.L.WHALEN,J.A.GERLT, AUTHOR 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 16-OCT-24 4YO7 1 SOURCE REMARK LINK REVDAT 1 25-MAR-15 4YO7 0 JRNL AUTH U.YADAVA,M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO, JRNL AUTH 2 J.BENACH,J.KOSS,S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN, JRNL AUTH 3 S.CHAMALA,S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL, JRNL AUTH 4 K.L.WHALEN,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING JRNL TITL 2 PROTEIN (IPR025997) FROM BACILLUS HALODURANS C-125 (BH2323, JRNL TITL 3 TARGET EFI-511484) WITH BOUND MYO-INOSITOL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 35122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.5417 - 3.9792 0.99 2795 131 0.1582 0.1619 REMARK 3 2 3.9792 - 3.1605 1.00 2689 133 0.1336 0.1744 REMARK 3 3 3.1605 - 2.7616 1.00 2672 118 0.1324 0.1726 REMARK 3 4 2.7616 - 2.5094 0.99 2655 130 0.1263 0.1444 REMARK 3 5 2.5094 - 2.3297 0.99 2596 153 0.1218 0.1712 REMARK 3 6 2.3297 - 2.1924 0.99 2582 146 0.1173 0.1576 REMARK 3 7 2.1924 - 2.0827 0.99 2572 163 0.1178 0.1641 REMARK 3 8 2.0827 - 1.9921 0.99 2603 136 0.1248 0.1484 REMARK 3 9 1.9921 - 1.9154 0.98 2563 146 0.1393 0.1864 REMARK 3 10 1.9154 - 1.8493 0.98 2562 122 0.1537 0.1786 REMARK 3 11 1.8493 - 1.7915 0.95 2467 133 0.1675 0.2087 REMARK 3 12 1.7915 - 1.7403 0.91 2413 130 0.1684 0.1885 REMARK 3 13 1.7403 - 1.7000 0.84 2193 119 0.1859 0.2115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2237 REMARK 3 ANGLE : 1.218 3000 REMARK 3 CHIRALITY : 0.052 353 REMARK 3 PLANARITY : 0.006 405 REMARK 3 DIHEDRAL : 13.844 832 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.1654 -1.3848 32.7779 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.1076 REMARK 3 T33: 0.1377 T12: 0.0227 REMARK 3 T13: -0.0091 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.4025 L22: 1.1987 REMARK 3 L33: 0.7621 L12: 0.1721 REMARK 3 L13: 0.0218 L23: 0.6417 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.0041 S13: -0.0614 REMARK 3 S21: 0.1048 S22: 0.0564 S23: -0.2309 REMARK 3 S31: 0.0920 S32: 0.1046 S33: -0.0549 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4145 7.2413 36.0887 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.0675 REMARK 3 T33: 0.0752 T12: -0.0162 REMARK 3 T13: 0.0150 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.4385 L22: 0.9753 REMARK 3 L33: 0.5635 L12: 0.0896 REMARK 3 L13: 0.1437 L23: 0.3162 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: -0.0201 S13: 0.0047 REMARK 3 S21: 0.0512 S22: -0.0393 S23: 0.0700 REMARK 3 S31: -0.0507 S32: -0.0272 S33: 0.0074 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6017 26.9489 47.6081 REMARK 3 T TENSOR REMARK 3 T11: 0.1149 T22: 0.1103 REMARK 3 T33: 0.0956 T12: -0.0246 REMARK 3 T13: 0.0020 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.6305 L22: 1.1659 REMARK 3 L33: 1.0423 L12: -0.0437 REMARK 3 L13: -0.0802 L23: 0.0699 REMARK 3 S TENSOR REMARK 3 S11: 0.0741 S12: -0.0766 S13: 0.0209 REMARK 3 S21: 0.2513 S22: -0.0147 S23: -0.0759 REMARK 3 S31: -0.1167 S32: 0.0934 S33: -0.0537 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.2420 8.6066 51.5656 REMARK 3 T TENSOR REMARK 3 T11: 0.2711 T22: 0.1182 REMARK 3 T33: 0.0027 T12: -0.0352 REMARK 3 T13: -0.0740 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.3254 L22: 1.0816 REMARK 3 L33: 0.7166 L12: 0.0246 REMARK 3 L13: 0.1464 L23: 0.5225 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: -0.2588 S13: -0.1257 REMARK 3 S21: 0.7303 S22: -0.0222 S23: -0.0836 REMARK 3 S31: 0.2357 S32: 0.0538 S33: -0.0493 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35728 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: FLAT TETRAGONAL PLATE WITH SOME THICKNESS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, REMARK 280 10 MM MYO-INOSITOL); RESERVOIR (0.2 M MAGNISIUM CHLORIDE, 0.1M REMARK 280 SODIUM CACODYLATE, PH 6.50, 50%(W/V) PEG 200); CRYOPROTECTION REMARK 280 100% RESERVOIR, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.07750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.92250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.16850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.07750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.92250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.16850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.07750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.92250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.16850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.07750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.92250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.16850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 551 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 572 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 588 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 593 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 595 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 VAL A 8 REMARK 465 ASP A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 THR A 12 REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 LEU A 15 REMARK 465 TYR A 16 REMARK 465 PHE A 17 REMARK 465 GLN A 18 REMARK 465 SER A 19 REMARK 465 MSE A 20 REMARK 465 ALA A 21 REMARK 465 CYS A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 GLY A 26 REMARK 465 GLU A 27 REMARK 465 THR A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 ASP A 31 REMARK 465 GLY A 32 REMARK 465 ASN A 33 REMARK 465 GLY A 34 REMARK 465 GLU A 35 REMARK 465 SER A 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 501 O HOH A 513 1.96 REMARK 500 OE2 GLU A 174 O HOH A 501 2.04 REMARK 500 O HOH A 502 O HOH A 605 2.05 REMARK 500 O HOH A 514 O HOH A 612 2.05 REMARK 500 O HOH A 501 O HOH A 521 2.06 REMARK 500 O HOH A 561 O HOH A 605 2.06 REMARK 500 O HOH A 612 O HOH A 616 2.08 REMARK 500 O HOH A 612 O HOH A 648 2.09 REMARK 500 O HOH A 611 O HOH A 612 2.10 REMARK 500 O HOH A 609 O HOH A 618 2.14 REMARK 500 O HOH A 502 O HOH A 596 2.15 REMARK 500 O HOH A 507 O HOH A 605 2.17 REMARK 500 O HOH A 511 O HOH A 713 2.17 REMARK 500 O HOH A 716 O HOH A 725 2.18 REMARK 500 O HOH A 603 O HOH A 745 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 578 O HOH A 578 3756 2.06 REMARK 500 O HOH A 575 O HOH A 612 2655 2.06 REMARK 500 O HOH A 530 O HOH A 605 2655 2.07 REMARK 500 O HOH A 515 O HOH A 605 2655 2.08 REMARK 500 O HOH A 606 O HOH A 612 2655 2.10 REMARK 500 O HOH A 502 O HOH A 515 2655 2.15 REMARK 500 O HOH A 516 O HOH A 603 3656 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 52 66.06 -103.31 REMARK 500 ASN A 130 -38.50 69.97 REMARK 500 PHE A 207 18.91 56.75 REMARK 500 ASP A 259 -38.94 138.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 38 O REMARK 620 2 HOH A 501 O 71.8 REMARK 620 3 HOH A 513 O 96.3 47.5 REMARK 620 4 HOH A 521 O 90.7 50.3 88.6 REMARK 620 5 HOH A 559 O 88.2 130.1 92.4 178.5 REMARK 620 6 HOH A 567 O 171.1 112.2 81.7 97.9 83.3 REMARK 620 7 HOH A 568 O 90.4 131.2 171.6 86.2 92.8 92.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 191 O REMARK 620 2 HIS A 194 O 81.0 REMARK 620 3 LEU A 197 O 104.9 87.3 REMARK 620 4 HOH A 653 O 97.3 178.3 93.5 REMARK 620 5 HOH A 656 O 96.0 83.7 155.6 96.2 REMARK 620 6 HOH A 682 O 175.2 98.3 79.8 83.4 79.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 250 O REMARK 620 2 VAL A 253 O 89.6 REMARK 620 3 HOH A 730 O 127.5 103.6 REMARK 620 4 HOH A 743 O 130.5 96.7 98.6 REMARK 620 5 HOH A 790 O 91.9 172.0 81.6 76.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 522 O REMARK 620 2 HOH A 522 O 124.7 REMARK 620 3 HOH A 532 O 82.2 84.1 REMARK 620 4 HOH A 532 O 84.1 82.2 150.3 REMARK 620 5 HOH A 572 O 62.4 62.3 75.1 75.2 REMARK 620 6 HOH A 572 O 62.3 62.4 75.2 75.1 0.0 REMARK 620 7 HOH A 586 O 85.7 139.5 73.4 131.6 137.6 137.6 REMARK 620 8 HOH A 586 O 139.5 85.7 131.6 73.4 137.6 137.6 84.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue INS A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-511484 RELATED DB: TARGETTRACK DBREF 4YO7 A 21 323 UNP Q9KAG4 Q9KAG4_BACHD 21 323 SEQADV 4YO7 MSE A -2 UNP Q9KAG4 INITIATING METHIONINE SEQADV 4YO7 HIS A -1 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 HIS A 0 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 HIS A 1 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 HIS A 2 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 HIS A 3 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 HIS A 4 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 SER A 5 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 SER A 6 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 GLY A 7 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 VAL A 8 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 ASP A 9 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 LEU A 10 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 GLY A 11 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 THR A 12 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 GLU A 13 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 ASN A 14 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 LEU A 15 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 TYR A 16 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 PHE A 17 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 GLN A 18 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 SER A 19 UNP Q9KAG4 EXPRESSION TAG SEQADV 4YO7 MSE A 20 UNP Q9KAG4 EXPRESSION TAG SEQRES 1 A 326 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 326 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ALA CYS GLY SEQRES 3 A 326 SER GLY GLY GLU THR SER GLY ASP GLY ASN GLY GLU SER SEQRES 4 A 326 THR GLY ASP SER GLY GLN LYS VAL ILE GLY VAL SER ILE SEQRES 5 A 326 SER ASN LEU ASP GLU PHE LEU THR TYR MSE GLN ASP ALA SEQRES 6 A 326 MSE LYS GLU GLU ALA ALA ASN TYR PRO ASP PHE GLU PHE SEQRES 7 A 326 ILE PHE SER ASP ALA GLN ASN ASP SER THR GLN GLN MSE SEQRES 8 A 326 ALA GLN VAL GLU ASN PHE ILE SER ARG ASN VAL ASP ALA SEQRES 9 A 326 ILE ILE VAL ASN PRO VAL ASP THR THR SER ALA VAL ASP SEQRES 10 A 326 ILE VAL ASN MSE VAL ASN ASP ALA GLY ILE PRO ILE ILE SEQRES 11 A 326 ILE ALA ASN ARG THR PHE ASP GLY VAL ASP GLN ALA THR SEQRES 12 A 326 ALA PHE VAL GLY SER GLU SER ILE GLN SER GLY LEU LEU SEQRES 13 A 326 GLN MSE GLU GLU VAL ALA LYS LEU LEU ASN ASN GLU GLY SEQRES 14 A 326 ASN ILE ALA ILE MSE ASP GLY GLU LEU GLY HIS GLU ALA SEQRES 15 A 326 GLN ILE MSE ARG THR GLU GLY ASN LYS GLN ILE ILE GLU SEQRES 16 A 326 GLU HIS ASP GLY LEU GLU VAL VAL LEU GLN GLY THR ALA SEQRES 17 A 326 LYS PHE ASP ARG SER GLU GLY MSE ARG LEU MSE GLU ASN SEQRES 18 A 326 TRP LEU ASN SER GLY THR GLU ILE ASP ALA VAL VAL ALA SEQRES 19 A 326 ASN ASN ASP GLU MSE ALA LEU GLY ALA ILE LEU ALA LEU SEQRES 20 A 326 GLU ALA VAL GLY LYS LEU ASP ASP VAL ILE VAL ALA GLY SEQRES 21 A 326 ILE ASP ALA THR PRO ALA ALA LEU GLU ALA MSE LYS GLU SEQRES 22 A 326 GLY LYS LEU ASP VAL THR VAL PHE GLN ASP ALA LYS GLY SEQRES 23 A 326 GLN GLY ALA THR SER VAL LYS VAL ALA VAL GLN ALA ALA SEQRES 24 A 326 ASN GLY GLU ASP VAL GLU ASP ALA MSE ILE PRO TYR GLU SEQRES 25 A 326 LEU VAL THR PRO GLU ASN VAL GLU GLU TYR GLU ALA LYS SEQRES 26 A 326 TYR MODRES 4YO7 MSE A 59 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 63 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 88 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 118 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 155 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 171 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 182 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 213 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 216 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 236 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 268 MET MODIFIED RESIDUE MODRES 4YO7 MSE A 305 MET MODIFIED RESIDUE HET MSE A 59 10 HET MSE A 63 17 HET MSE A 88 17 HET MSE A 118 17 HET MSE A 155 17 HET MSE A 171 17 HET MSE A 182 17 HET MSE A 213 17 HET MSE A 216 17 HET MSE A 236 17 HET MSE A 268 16 HET MSE A 305 17 HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET CL A 404 1 HET INS A 405 12 HET NA A 406 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM INS 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE HETNAM NA SODIUM ION HETSYN INS MYO-INOSITOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 MG 3(MG 2+) FORMUL 5 CL CL 1- FORMUL 6 INS C6 H12 O6 FORMUL 7 NA NA 1+ FORMUL 8 HOH *295(H2 O) HELIX 1 AA1 ASP A 53 ALA A 68 1 16 HELIX 2 AA2 ASP A 83 ASN A 98 1 16 HELIX 3 AA3 ASP A 108 GLY A 123 1 16 HELIX 4 AA4 GLY A 135 ALA A 139 5 5 HELIX 5 AA5 GLU A 146 LEU A 162 1 17 HELIX 6 AA6 HIS A 177 GLU A 193 1 17 HELIX 7 AA7 ASP A 208 SER A 222 1 15 HELIX 8 AA8 ASN A 233 VAL A 247 1 15 HELIX 9 AA9 GLY A 248 VAL A 253 5 6 HELIX 10 AB1 THR A 261 GLU A 270 1 10 HELIX 11 AB2 ASP A 280 ASN A 297 1 18 HELIX 12 AB3 ASN A 315 ALA A 321 1 7 SHEET 1 AA1 6 PHE A 73 ASP A 79 0 SHEET 2 AA1 6 LYS A 43 ILE A 49 1 N VAL A 47 O ILE A 76 SHEET 3 AA1 6 ALA A 101 VAL A 104 1 O ILE A 103 N SER A 48 SHEET 4 AA1 6 ILE A 126 ALA A 129 1 O ILE A 127 N ILE A 102 SHEET 5 AA1 6 ALA A 141 GLY A 144 1 O ALA A 141 N ILE A 128 SHEET 6 AA1 6 ALA A 304 MSE A 305 1 O ALA A 304 N PHE A 142 SHEET 1 AA2 4 LEU A 197 THR A 204 0 SHEET 2 AA2 4 GLY A 166 ASP A 172 1 N ILE A 168 O GLU A 198 SHEET 3 AA2 4 ALA A 228 ALA A 231 1 O VAL A 230 N ALA A 169 SHEET 4 AA2 4 ILE A 254 ALA A 256 1 O ILE A 254 N VAL A 229 SHEET 1 AA3 2 THR A 276 PHE A 278 0 SHEET 2 AA3 2 GLU A 309 VAL A 311 -1 O GLU A 309 N PHE A 278 LINK C TYR A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N GLN A 60 1555 1555 1.33 LINK C ALA A 62 N MSE A 63 1555 1555 1.34 LINK C MSE A 63 N LYS A 64 1555 1555 1.33 LINK C GLN A 87 N MSE A 88 1555 1555 1.34 LINK C MSE A 88 N ALA A 89 1555 1555 1.33 LINK C ASN A 117 N MSE A 118 1555 1555 1.32 LINK C MSE A 118 N VAL A 119 1555 1555 1.34 LINK C GLN A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N GLU A 156 1555 1555 1.33 LINK C ILE A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N ASP A 172 1555 1555 1.33 LINK C ILE A 181 N MSE A 182 1555 1555 1.33 LINK C MSE A 182 N ARG A 183 1555 1555 1.33 LINK C GLY A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N ARG A 214 1555 1555 1.34 LINK C LEU A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N GLU A 217 1555 1555 1.33 LINK C GLU A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N ALA A 237 1555 1555 1.33 LINK C ALA A 267 N MSE A 268 1555 1555 1.33 LINK C MSE A 268 N LYS A 269 1555 1555 1.33 LINK C ALA A 304 N MSE A 305 1555 1555 1.33 LINK C MSE A 305 N ILE A 306 1555 1555 1.32 LINK O GLY A 38 MG MG A 401 1555 1555 2.08 LINK O ILE A 191 NA NA A 406 1555 1555 2.45 LINK O HIS A 194 NA NA A 406 1555 1555 2.43 LINK O LEU A 197 NA NA A 406 1555 1555 2.37 LINK O LEU A 250 MG MG A 402 1555 1555 2.24 LINK O VAL A 253 MG MG A 402 1555 1555 2.29 LINK MG MG A 401 O HOH A 501 1555 7645 2.63 LINK MG MG A 401 O HOH A 513 1555 7645 2.05 LINK MG MG A 401 O HOH A 521 1555 7645 2.05 LINK MG MG A 401 O HOH A 559 1555 1555 2.09 LINK MG MG A 401 O HOH A 567 1555 7645 2.13 LINK MG MG A 401 O HOH A 568 1555 1555 2.06 LINK MG MG A 402 O HOH A 730 1555 1555 2.09 LINK MG MG A 402 O HOH A 743 1555 1555 2.10 LINK MG MG A 402 O HOH A 790 1555 1555 2.09 LINK MG MG A 403 O HOH A 522 1555 1555 2.05 LINK MG MG A 403 O HOH A 522 1555 2655 2.05 LINK MG MG A 403 O HOH A 532 1555 1555 2.13 LINK MG MG A 403 O HOH A 532 1555 2655 2.13 LINK MG MG A 403 O HOH A 572 1555 1555 2.07 LINK MG MG A 403 O HOH A 572 1555 2655 2.07 LINK MG MG A 403 O HOH A 586 1555 1555 2.04 LINK MG MG A 403 O HOH A 586 1555 2655 2.04 LINK NA NA A 406 O HOH A 653 1555 1555 2.36 LINK NA NA A 406 O HOH A 656 1555 1555 2.39 LINK NA NA A 406 O HOH A 682 1555 1555 2.49 SITE 1 AC1 7 GLY A 38 HOH A 501 HOH A 513 HOH A 521 SITE 2 AC1 7 HOH A 559 HOH A 567 HOH A 568 SITE 1 AC2 6 LEU A 250 VAL A 253 ASP A 274 HOH A 730 SITE 2 AC2 6 HOH A 743 HOH A 790 SITE 1 AC3 4 HOH A 522 HOH A 532 HOH A 572 HOH A 586 SITE 1 AC4 3 ASP A 53 GLU A 54 HOH A 629 SITE 1 AC5 12 ASP A 53 PHE A 55 LEU A 56 ASN A 130 SITE 2 AC5 12 ARG A 131 ARG A 183 ASN A 233 ASP A 259 SITE 3 AC5 12 GLN A 279 HOH A 621 HOH A 626 HOH A 628 SITE 1 AC6 6 ILE A 191 HIS A 194 LEU A 197 HOH A 653 SITE 2 AC6 6 HOH A 656 HOH A 682 CRYST1 68.155 79.845 118.337 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014672 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008450 0.00000