HEADER OXIDOREDUCTASE 11-MAR-15 4YOF TITLE DOSS GAFA DOMAIN REDUCED NITRIC OXIDE BOUND CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REDOX SENSOR HISTIDINE KINASE RESPONSE REGULATOR DEVS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 63-210; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN CDC 1551 / SOURCE 3 OSHKOSH); SOURCE 4 ORGANISM_TAXID: 83331; SOURCE 5 STRAIN: CDC 1551 / OSHKOSH; SOURCE 6 ATCC: 25618; SOURCE 7 GENE: DEVS, DOSS, MT3218; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS DOSS, TUBERCULOSIS, HEME, GAS SENSOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MADRONA REVDAT 6 29-NOV-23 4YOF 1 REMARK LINK REVDAT 5 11-DEC-19 4YOF 1 JRNL REVDAT 4 22-NOV-17 4YOF 1 JRNL REMARK REVDAT 3 10-AUG-16 4YOF 1 JRNL REVDAT 2 15-JUN-16 4YOF 1 JRNL REVDAT 1 23-MAR-16 4YOF 0 JRNL AUTH D.BASUDHAR,Y.MADRONA,S.KANDEL,J.N.LAMPE,C.R.NISHIDA, JRNL AUTH 2 P.R.DE MONTELLANO JRNL TITL ANALYSIS OF CYTOCHROME P450 CYP119 LIGAND-DEPENDENT JRNL TITL 2 CONFORMATIONAL DYNAMICS BY TWO-DIMENSIONAL NMR AND X-RAY JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF J.BIOL.CHEM. V. 290 10000 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25670859 JRNL DOI 10.1074/JBC.M114.627935 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 22572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1437 - 3.9496 0.95 2563 142 0.1600 0.2028 REMARK 3 2 3.9496 - 3.1355 1.00 2559 135 0.1708 0.1951 REMARK 3 3 3.1355 - 2.7393 1.00 2518 155 0.1972 0.2457 REMARK 3 4 2.7393 - 2.4889 1.00 2526 129 0.2049 0.2415 REMARK 3 5 2.4889 - 2.3105 1.00 2490 140 0.2011 0.2346 REMARK 3 6 2.3105 - 2.1743 1.00 2485 137 0.1998 0.2725 REMARK 3 7 2.1743 - 2.0654 1.00 2499 125 0.2081 0.2344 REMARK 3 8 2.0654 - 1.9755 1.00 2458 126 0.2174 0.2767 REMARK 3 9 1.9755 - 1.8995 0.98 2473 127 0.2467 0.2883 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2347 REMARK 3 ANGLE : 1.193 3229 REMARK 3 CHIRALITY : 0.052 351 REMARK 3 PLANARITY : 0.006 419 REMARK 3 DIHEDRAL : 14.572 843 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 61:90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0317 79.1467 -1.1415 REMARK 3 T TENSOR REMARK 3 T11: 0.3622 T22: 0.2441 REMARK 3 T33: 0.2607 T12: 0.0298 REMARK 3 T13: -0.1063 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.7051 L22: 0.1865 REMARK 3 L33: 0.4065 L12: -0.0194 REMARK 3 L13: -0.1671 L23: 0.2764 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.2255 S13: -0.0398 REMARK 3 S21: -0.1733 S22: -0.0221 S23: 0.0660 REMARK 3 S31: -0.4210 S32: -0.0914 S33: -0.0012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 91:101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6770 90.3425 -1.7515 REMARK 3 T TENSOR REMARK 3 T11: 0.5578 T22: 0.2339 REMARK 3 T33: 0.4378 T12: 0.1509 REMARK 3 T13: -0.2410 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.4857 L22: 0.7002 REMARK 3 L33: 1.2173 L12: -0.2224 REMARK 3 L13: -0.2072 L23: -0.3471 REMARK 3 S TENSOR REMARK 3 S11: -0.2439 S12: -0.0234 S13: 0.3981 REMARK 3 S21: -0.2934 S22: -0.3714 S23: -0.0382 REMARK 3 S31: -0.4740 S32: -0.2635 S33: -1.1180 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 102:173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0023 86.4907 7.2935 REMARK 3 T TENSOR REMARK 3 T11: 0.1861 T22: 0.2249 REMARK 3 T33: 0.2574 T12: -0.0180 REMARK 3 T13: -0.0496 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.4967 L22: 1.1324 REMARK 3 L33: 0.8322 L12: 0.2375 REMARK 3 L13: 0.1471 L23: 0.1920 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: -0.0201 S13: 0.2417 REMARK 3 S21: -0.2025 S22: 0.0646 S23: 0.0540 REMARK 3 S31: -0.1259 S32: 0.0158 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 174:204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0934 76.9272 -2.2320 REMARK 3 T TENSOR REMARK 3 T11: 0.3618 T22: 0.2613 REMARK 3 T33: 0.2024 T12: -0.0064 REMARK 3 T13: -0.0073 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.4017 L22: 0.9494 REMARK 3 L33: 1.0236 L12: 0.6605 REMARK 3 L13: 0.4635 L23: 0.2664 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: 0.1397 S13: -0.1352 REMARK 3 S21: -0.3683 S22: 0.1570 S23: -0.1713 REMARK 3 S31: 0.1089 S32: 0.3715 S33: 0.0411 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 63:92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1752 70.0949 -20.4697 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.3196 REMARK 3 T33: 0.3346 T12: -0.0347 REMARK 3 T13: -0.0852 T23: 0.0792 REMARK 3 L TENSOR REMARK 3 L11: 0.3835 L22: 0.5755 REMARK 3 L33: 0.9116 L12: -0.0646 REMARK 3 L13: -0.6035 L23: 0.1709 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: 0.2596 S13: 0.2116 REMARK 3 S21: -0.0667 S22: -0.0514 S23: -0.1012 REMARK 3 S31: -0.1917 S32: -0.0066 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 93:153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7511 59.3899 -24.9832 REMARK 3 T TENSOR REMARK 3 T11: 0.2786 T22: 0.2815 REMARK 3 T33: 0.2540 T12: -0.0554 REMARK 3 T13: -0.0029 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 0.1776 L22: 0.9569 REMARK 3 L33: 0.9979 L12: -0.4012 REMARK 3 L13: 0.3217 L23: -0.5933 REMARK 3 S TENSOR REMARK 3 S11: -0.0571 S12: 0.2131 S13: 0.0403 REMARK 3 S21: -0.1176 S22: 0.0523 S23: 0.0944 REMARK 3 S31: 0.2370 S32: -0.2080 S33: -0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 154:163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9750 66.4136 -14.0068 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.3651 REMARK 3 T33: 0.2042 T12: -0.0088 REMARK 3 T13: -0.0005 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.0523 L22: 0.0706 REMARK 3 L33: 0.1064 L12: 0.0584 REMARK 3 L13: -0.0357 L23: -0.0755 REMARK 3 S TENSOR REMARK 3 S11: 0.0920 S12: 0.1534 S13: -0.1888 REMARK 3 S21: 0.3167 S22: -0.2769 S23: 0.1405 REMARK 3 S31: 0.1262 S32: -0.2551 S33: 0.0017 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 164:203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4251 66.9974 -13.1992 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.2290 REMARK 3 T33: 0.2384 T12: 0.0039 REMARK 3 T13: -0.0688 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.2064 L22: 0.7125 REMARK 3 L33: 0.7009 L12: 0.3790 REMARK 3 L13: 0.0983 L23: 0.5018 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: -0.1464 S13: -0.0409 REMARK 3 S21: 0.3375 S22: -0.0907 S23: 0.0313 REMARK 3 S31: -0.1028 S32: -0.1724 S33: -0.0230 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978550 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23788 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% (WT/VOL) PEG 4000, 0.2M CALCIUM REMARK 280 ACETATE, 0.1M TRIS-HCL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.79650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.32250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.42350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.32250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.79650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.42350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 57 REMARK 465 ALA A 58 REMARK 465 MET A 59 REMARK 465 SER A 60 REMARK 465 VAL A 162 REMARK 465 ARG A 163 REMARK 465 ASP A 164 REMARK 465 GLU A 165 REMARK 465 LEU A 205 REMARK 465 TYR A 206 REMARK 465 GLN A 207 REMARK 465 GLN A 208 REMARK 465 ALA A 209 REMARK 465 LYS A 210 REMARK 465 GLY B 57 REMARK 465 ALA B 58 REMARK 465 MET B 59 REMARK 465 SER B 60 REMARK 465 ASP B 61 REMARK 465 PRO B 62 REMARK 465 ARG B 204 REMARK 465 LEU B 205 REMARK 465 TYR B 206 REMARK 465 GLN B 207 REMARK 465 GLN B 208 REMARK 465 ALA B 209 REMARK 465 LYS B 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 94 O HOH A 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 148 -5.92 74.86 REMARK 500 ARG A 153 -77.23 -121.37 REMARK 500 TYR B 148 -5.40 73.50 REMARK 500 ARG B 153 -76.89 -123.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 149 NE2 REMARK 620 2 HEM A 301 NA 97.0 REMARK 620 3 HEM A 301 NB 92.2 91.0 REMARK 620 4 HEM A 301 NC 91.6 171.4 89.5 REMARK 620 5 HEM A 301 ND 92.2 88.8 175.6 90.0 REMARK 620 6 NO A 302 N 176.3 80.2 90.2 91.2 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 149 NE2 REMARK 620 2 HEM B 301 NA 91.6 REMARK 620 3 HEM B 301 NB 90.6 88.1 REMARK 620 4 HEM B 301 NC 91.7 176.6 92.4 REMARK 620 5 HEM B 301 ND 94.0 88.6 174.4 90.6 REMARK 620 6 NO B 302 N 175.6 85.5 86.0 91.2 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YNR RELATED DB: PDB REMARK 900 4YNR CONTAINS THE SAME PROTEIN BOUND TO CARBON MONOXIDE REMARK 900 RELATED ID: 2W3D RELATED DB: PDB REMARK 900 2W3D CONTAINS THE OXIDIZED FORM OF THE SAME PROTEIN NOT BOUND TO REMARK 900 LIGAND. REMARK 900 RELATED ID: 2W3F RELATED DB: PDB REMARK 900 2W3F CONTAINS THE SAME PROTEIN (ALSO REDUCED) NOT BOUND TO A LIGAND. DBREF 4YOF A 63 210 UNP P9WGK2 DEVS_MYCTO 63 210 DBREF 4YOF B 63 210 UNP P9WGK2 DEVS_MYCTO 63 210 SEQADV 4YOF GLY A 57 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF ALA A 58 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF MET A 59 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF SER A 60 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF ASP A 61 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF PRO A 62 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF GLY B 57 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF ALA B 58 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF MET B 59 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF SER B 60 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF ASP B 61 UNP P9WGK2 EXPRESSION TAG SEQADV 4YOF PRO B 62 UNP P9WGK2 EXPRESSION TAG SEQRES 1 A 154 GLY ALA MET SER ASP PRO ASP LEU GLU ALA THR LEU ARG SEQRES 2 A 154 ALA ILE VAL HIS SER ALA THR SER LEU VAL ASP ALA ARG SEQRES 3 A 154 TYR GLY ALA MET GLU VAL HIS ASP ARG GLN HIS ARG VAL SEQRES 4 A 154 LEU HIS PHE VAL TYR GLU GLY ILE ASP GLU GLU THR VAL SEQRES 5 A 154 ARG ARG ILE GLY HIS LEU PRO LYS GLY LEU GLY VAL ILE SEQRES 6 A 154 GLY LEU LEU ILE GLU ASP PRO LYS PRO LEU ARG LEU ASP SEQRES 7 A 154 ASP VAL SER ALA HIS PRO ALA SER ILE GLY PHE PRO PRO SEQRES 8 A 154 TYR HIS PRO PRO MET ARG THR PHE LEU GLY VAL PRO VAL SEQRES 9 A 154 ARG VAL ARG ASP GLU SER PHE GLY THR LEU TYR LEU THR SEQRES 10 A 154 ASP LYS THR ASN GLY GLN PRO PHE SER ASP ASP ASP GLU SEQRES 11 A 154 VAL LEU VAL GLN ALA LEU ALA ALA ALA ALA GLY ILE ALA SEQRES 12 A 154 VAL ALA ASN ALA ARG LEU TYR GLN GLN ALA LYS SEQRES 1 B 154 GLY ALA MET SER ASP PRO ASP LEU GLU ALA THR LEU ARG SEQRES 2 B 154 ALA ILE VAL HIS SER ALA THR SER LEU VAL ASP ALA ARG SEQRES 3 B 154 TYR GLY ALA MET GLU VAL HIS ASP ARG GLN HIS ARG VAL SEQRES 4 B 154 LEU HIS PHE VAL TYR GLU GLY ILE ASP GLU GLU THR VAL SEQRES 5 B 154 ARG ARG ILE GLY HIS LEU PRO LYS GLY LEU GLY VAL ILE SEQRES 6 B 154 GLY LEU LEU ILE GLU ASP PRO LYS PRO LEU ARG LEU ASP SEQRES 7 B 154 ASP VAL SER ALA HIS PRO ALA SER ILE GLY PHE PRO PRO SEQRES 8 B 154 TYR HIS PRO PRO MET ARG THR PHE LEU GLY VAL PRO VAL SEQRES 9 B 154 ARG VAL ARG ASP GLU SER PHE GLY THR LEU TYR LEU THR SEQRES 10 B 154 ASP LYS THR ASN GLY GLN PRO PHE SER ASP ASP ASP GLU SEQRES 11 B 154 VAL LEU VAL GLN ALA LEU ALA ALA ALA ALA GLY ILE ALA SEQRES 12 B 154 VAL ALA ASN ALA ARG LEU TYR GLN GLN ALA LYS HET HEM A 301 43 HET NO A 302 2 HET HEM B 301 43 HET NO B 302 2 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM NO NITRIC OXIDE HETSYN HEM HEME HETSYN NO NITROGEN MONOXIDE FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 NO 2(N O) FORMUL 7 HOH *123(H2 O) HELIX 1 AA1 ASP A 61 VAL A 79 1 19 HELIX 2 AA2 ASP A 104 GLY A 112 1 9 HELIX 3 AA3 LEU A 118 ASP A 127 1 10 HELIX 4 AA4 ASP A 135 HIS A 139 5 5 HELIX 5 AA5 SER A 182 ASN A 202 1 21 HELIX 6 AA6 LEU B 64 VAL B 79 1 16 HELIX 7 AA7 ASP B 104 GLY B 112 1 9 HELIX 8 AA8 LEU B 118 ASP B 127 1 10 HELIX 9 AA9 ASP B 135 HIS B 139 5 5 HELIX 10 AB1 SER B 182 ASN B 202 1 21 SHEET 1 AA1 5 VAL A 95 GLU A 101 0 SHEET 2 AA1 5 ALA A 81 HIS A 89 -1 N VAL A 88 O LEU A 96 SHEET 3 AA1 5 GLY A 168 LYS A 175 -1 O TYR A 171 N ALA A 85 SHEET 4 AA1 5 PHE A 155 VAL A 160 -1 N VAL A 160 O GLY A 168 SHEET 5 AA1 5 LEU A 131 LEU A 133 -1 N LEU A 131 O GLY A 157 SHEET 1 AA2 5 VAL B 95 GLU B 101 0 SHEET 2 AA2 5 ALA B 81 HIS B 89 -1 N VAL B 88 O LEU B 96 SHEET 3 AA2 5 SER B 166 LYS B 175 -1 O PHE B 167 N HIS B 89 SHEET 4 AA2 5 PHE B 155 ARG B 161 -1 N LEU B 156 O LEU B 172 SHEET 5 AA2 5 LEU B 131 LEU B 133 -1 N LEU B 131 O GLY B 157 LINK NE2 HIS A 149 FE HEM A 301 1555 1555 2.08 LINK FE HEM A 301 N NO A 302 1555 1555 1.67 LINK NE2 HIS B 149 FE HEM B 301 1555 1555 2.08 LINK FE HEM B 301 N NO B 302 1555 1555 1.70 CISPEP 1 ALA A 203 ARG A 204 0 4.10 SITE 1 AC1 23 GLY A 84 GLU A 101 ILE A 103 ILE A 111 SITE 2 AC1 23 HIS A 113 PRO A 115 LYS A 116 GLY A 117 SITE 3 AC1 23 LEU A 118 GLY A 119 VAL A 120 SER A 142 SITE 4 AC1 23 ILE A 143 GLY A 144 PHE A 145 PRO A 146 SITE 5 AC1 23 HIS A 149 MET A 152 TYR A 171 THR A 173 SITE 6 AC1 23 NO A 302 HOH A 433 HOH A 458 SITE 1 AC2 5 PHE A 98 PRO A 115 TYR A 171 HEM A 301 SITE 2 AC2 5 HOH A 432 SITE 1 AC3 23 GLY B 84 PHE B 98 TYR B 100 GLU B 101 SITE 2 AC3 23 ILE B 103 HIS B 113 LEU B 114 PRO B 115 SITE 3 AC3 23 LYS B 116 GLY B 117 LEU B 118 GLY B 119 SITE 4 AC3 23 VAL B 120 SER B 142 ILE B 143 GLY B 144 SITE 5 AC3 23 PRO B 146 HIS B 149 MET B 152 TYR B 171 SITE 6 AC3 23 THR B 173 NO B 302 HOH B 459 SITE 1 AC4 4 PRO B 115 TYR B 171 HEM B 301 HOH B 459 CRYST1 33.593 78.847 110.645 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029768 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009038 0.00000