HEADER TRANSCRIPTION 12-MAR-15 4YOZ TITLE P107 POCKET DOMAIN IN COMPLEX WITH HPV E7 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-LIKE PROTEIN 1,RETINOBLASTOMA-LIKE PROTEIN COMPND 3 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 391-593,UNP RESIDUES 391-593; COMPND 6 SYNONYM: 107 KDA RETINOBLASTOMA-ASSOCIATED PROTEIN,P107,PRB1,107 KDA COMPND 7 RETINOBLASTOMA-ASSOCIATED PROTEIN,P107,PRB1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HPV E7 PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS; SOURCE 10 ORGANISM_TAXID: 10566; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS POCKET PROTEIN, CYCLIN BOX, TRANSCRIPTIONAL REGULATOR, CELL CYCLE, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.J.LIBAN,K.Z.GUILEY,J.G.FELTHOUSEN,P.RAMANAN,L.LITOVCHICK,S.M.RUBIN REVDAT 6 28-FEB-24 4YOZ 1 REMARK REVDAT 5 04-DEC-19 4YOZ 1 REMARK REVDAT 4 27-SEP-17 4YOZ 1 REMARK REVDAT 3 20-SEP-17 4YOZ 1 REMARK REVDAT 2 09-SEP-15 4YOZ 1 REMARK REVDAT 1 24-JUN-15 4YOZ 0 JRNL AUTH K.Z.GUILEY,T.J.LIBAN,J.G.FELTHOUSEN,P.RAMANAN,L.LITOVCHICK, JRNL AUTH 2 S.M.RUBIN JRNL TITL STRUCTURAL MECHANISMS OF DREAM COMPLEX ASSEMBLY AND JRNL TITL 2 REGULATION. JRNL REF GENES DEV. V. 29 961 2015 JRNL REFN ISSN 1549-5477 JRNL PMID 25917549 JRNL DOI 10.1101/GAD.257568.114 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 21549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.280 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.2138 - 5.4095 0.88 1374 141 0.1974 0.2483 REMARK 3 2 5.4095 - 4.2942 0.90 1381 141 0.1689 0.2195 REMARK 3 3 4.2942 - 3.7515 0.92 1386 141 0.1600 0.1941 REMARK 3 4 3.7515 - 3.4085 0.92 1392 143 0.1762 0.2397 REMARK 3 5 3.4085 - 3.1642 0.93 1392 142 0.1941 0.2652 REMARK 3 6 3.1642 - 2.9777 0.93 1392 143 0.1996 0.2955 REMARK 3 7 2.9777 - 2.8286 0.93 1415 145 0.1897 0.2264 REMARK 3 8 2.8286 - 2.7054 0.93 1400 143 0.1738 0.2367 REMARK 3 9 2.7054 - 2.6013 0.93 1389 143 0.1718 0.2381 REMARK 3 10 2.6013 - 2.5115 0.94 1420 145 0.1809 0.2364 REMARK 3 11 2.5115 - 2.4330 0.94 1398 142 0.1858 0.2379 REMARK 3 12 2.4330 - 2.3634 0.94 1412 145 0.2045 0.2616 REMARK 3 13 2.3634 - 2.3012 0.94 1413 145 0.2101 0.2767 REMARK 3 14 2.3012 - 2.2451 0.94 1385 141 0.2180 0.2617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2952 REMARK 3 ANGLE : 0.873 3990 REMARK 3 CHIRALITY : 0.033 449 REMARK 3 PLANARITY : 0.004 499 REMARK 3 DIHEDRAL : 13.793 1097 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 389 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2829 11.1822 -7.4632 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.1722 REMARK 3 T33: 0.1881 T12: 0.0247 REMARK 3 T13: 0.0350 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 2.6840 L22: 2.2978 REMARK 3 L33: 2.1273 L12: 0.5565 REMARK 3 L13: 0.1479 L23: -0.4642 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: 0.1380 S13: -0.1063 REMARK 3 S21: -0.2403 S22: 0.0993 S23: -0.3699 REMARK 3 S31: 0.1134 S32: 0.1656 S33: -0.0635 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 454 THROUGH 580 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9673 11.9036 2.9397 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.1428 REMARK 3 T33: 0.1481 T12: 0.0146 REMARK 3 T13: -0.0085 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.3504 L22: 0.9784 REMARK 3 L33: 0.9824 L12: 0.0657 REMARK 3 L13: -0.3262 L23: -0.0882 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: -0.1137 S13: -0.1344 REMARK 3 S21: 0.0172 S22: 0.0371 S23: -0.2003 REMARK 3 S31: 0.0396 S32: 0.1074 S33: 0.0229 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 581 THROUGH 784 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0090 5.9654 18.7161 REMARK 3 T TENSOR REMARK 3 T11: 0.4941 T22: 0.4125 REMARK 3 T33: 0.2530 T12: 0.0107 REMARK 3 T13: 0.0291 T23: 0.1503 REMARK 3 L TENSOR REMARK 3 L11: 3.9279 L22: 1.8547 REMARK 3 L33: 1.9792 L12: 0.0752 REMARK 3 L13: 2.4625 L23: 0.9051 REMARK 3 S TENSOR REMARK 3 S11: 0.1523 S12: -0.1986 S13: -0.4561 REMARK 3 S21: 0.0468 S22: -0.2101 S23: -0.3450 REMARK 3 S31: 0.7875 S32: 0.2527 S33: 0.0621 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 785 THROUGH 967 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0701 25.7846 25.9786 REMARK 3 T TENSOR REMARK 3 T11: 0.3001 T22: 0.3472 REMARK 3 T33: 0.2295 T12: 0.0282 REMARK 3 T13: -0.0387 T23: -0.0937 REMARK 3 L TENSOR REMARK 3 L11: 1.6811 L22: 2.1558 REMARK 3 L33: 2.4673 L12: -0.0157 REMARK 3 L13: -0.0842 L23: 0.7572 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: -0.6001 S13: 0.2780 REMARK 3 S21: 0.4616 S22: 0.0188 S23: -0.1134 REMARK 3 S31: -0.2789 S32: 0.0376 S33: 0.0482 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8287 40.7124 30.0641 REMARK 3 T TENSOR REMARK 3 T11: 0.4110 T22: 0.7452 REMARK 3 T33: 0.5983 T12: 0.1062 REMARK 3 T13: -0.0785 T23: -0.3794 REMARK 3 L TENSOR REMARK 3 L11: 3.0469 L22: 6.9373 REMARK 3 L33: 5.9791 L12: -3.0063 REMARK 3 L13: 2.2309 L23: 1.9532 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: 0.1296 S13: 0.0971 REMARK 3 S21: -0.1143 S22: -0.0737 S23: -0.2589 REMARK 3 S31: 0.0474 S32: 0.3753 S33: 0.0841 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 57.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, AMMONIUM SULFATE, PEG 400, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.84500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.84500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1186 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 388 REMARK 465 ASN A 773 REMARK 465 ASN A 774 REMARK 465 PHE A 775 REMARK 465 GLU A 776 REMARK 465 THR A 777 REMARK 465 GLY A 778 REMARK 465 ASN A 779 REMARK 465 SER A 922 REMARK 465 ILE A 923 REMARK 465 LYS A 924 REMARK 465 GLU A 925 REMARK 465 ASP A 950 REMARK 465 LEU A 951 REMARK 465 ALA A 952 REMARK 465 ASN A 953 REMARK 465 GLN A 954 REMARK 465 ASP A 955 REMARK 465 HIS A 956 REMARK 465 MET A 957 REMARK 465 MET A 958 REMARK 465 ASP A 959 REMARK 465 ALA A 960 REMARK 465 PRO A 961 REMARK 465 HIS A 968 REMARK 465 ILE A 969 REMARK 465 LYS A 970 REMARK 465 GLN A 971 REMARK 465 GLN A 972 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 885 CG CD CE NZ REMARK 470 LYS A 948 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1170 O HOH A 1172 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 594 CA - N - CD ANGL. DEV. = -12.3 DEGREES REMARK 500 LEU B 28 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 447 -21.01 79.21 REMARK 500 PRO A 520 44.31 -89.54 REMARK 500 SER A 565 -60.18 -136.05 REMARK 500 ARG A 784 -1.17 80.42 REMARK 500 ASP A 811 72.27 44.09 REMARK 500 LEU A 884 -63.59 -100.15 REMARK 500 ILE A 937 -63.32 -128.88 REMARK 500 LEU A 947 -8.61 -45.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GUX RELATED DB: PDB REMARK 900 E7 COMPLEX WITH RB REMARK 900 RELATED ID: 4YOO RELATED DB: PDB REMARK 900 RELATED ID: 4YOS RELATED DB: PDB DBREF 4YOZ A 391 593 UNP P28749 RBL1_HUMAN 391 593 DBREF 4YOZ A 777 972 UNP P28749 RBL1_HUMAN 777 972 DBREF 4YOZ B 21 29 PDB 4YOZ 4YOZ 21 29 SEQADV 4YOZ GLY A 388 UNP P28749 EXPRESSION TAG SEQADV 4YOZ GLU A 389 UNP P28749 EXPRESSION TAG SEQADV 4YOZ PHE A 390 UNP P28749 EXPRESSION TAG SEQADV 4YOZ PRO A 594 UNP P28749 LINKER SEQADV 4YOZ ASN A 773 UNP P28749 LINKER SEQADV 4YOZ ASN A 774 UNP P28749 LINKER SEQADV 4YOZ PHE A 775 UNP P28749 LINKER SEQADV 4YOZ GLU A 776 UNP P28749 LINKER SEQADV 4YOZ ASN A 779 UNP P28749 ILE 779 CONFLICT SEQADV 4YOZ A UNP P28749 PRO 888 DELETION SEQADV 4YOZ A UNP P28749 ARG 889 DELETION SEQADV 4YOZ A UNP P28749 GLU 890 DELETION SEQADV 4YOZ A UNP P28749 VAL 891 DELETION SEQADV 4YOZ A UNP P28749 VAL 892 DELETION SEQADV 4YOZ A UNP P28749 ALA 893 DELETION SEQADV 4YOZ A UNP P28749 TYR 894 DELETION SEQADV 4YOZ A UNP P28749 ASN 895 DELETION SEQADV 4YOZ A UNP P28749 LYS 896 DELETION SEQADV 4YOZ A UNP P28749 ASN 897 DELETION SEQADV 4YOZ A UNP P28749 ILE 898 DELETION SEQADV 4YOZ A UNP P28749 ASN 899 DELETION SEQADV 4YOZ A UNP P28749 ASP 900 DELETION SEQADV 4YOZ A UNP P28749 ASP 901 DELETION SEQADV 4YOZ A UNP P28749 PHE 902 DELETION SEQADV 4YOZ A UNP P28749 GLU 903 DELETION SEQADV 4YOZ A UNP P28749 MET 904 DELETION SEQADV 4YOZ A UNP P28749 ILE 905 DELETION SEQADV 4YOZ A UNP P28749 ASP 906 DELETION SEQADV 4YOZ A UNP P28749 CYS 907 DELETION SEQADV 4YOZ A UNP P28749 ASP 908 DELETION SEQADV 4YOZ A UNP P28749 LEU 909 DELETION SEQADV 4YOZ A UNP P28749 GLU 910 DELETION SEQADV 4YOZ A UNP P28749 ASP 911 DELETION SEQADV 4YOZ A UNP P28749 ALA 912 DELETION SEQADV 4YOZ A UNP P28749 THR 913 DELETION SEQADV 4YOZ A UNP P28749 LYS 914 DELETION SEQADV 4YOZ A UNP P28749 THR 915 DELETION SEQADV 4YOZ A UNP P28749 PRO 916 DELETION SEQADV 4YOZ A UNP P28749 ASP 917 DELETION SEQADV 4YOZ A UNP P28749 CYS 918 DELETION SEQADV 4YOZ A UNP P28749 SER 919 DELETION SEQADV 4YOZ A UNP P28749 SER 920 DELETION SEQADV 4YOZ A UNP P28749 GLY 921 DELETION SEQADV 4YOZ A UNP P28749 PRO 922 DELETION SEQADV 4YOZ A UNP P28749 VAL 923 DELETION SEQRES 1 A 371 GLY GLU PHE THR GLN SER VAL SER ARG LEU GLN SER ILE SEQRES 2 A 371 VAL ALA GLY LEU LYS ASN ALA PRO SER ASP GLN LEU ILE SEQRES 3 A 371 ASN ILE PHE GLU SER CYS VAL ARG ASN PRO VAL GLU ASN SEQRES 4 A 371 ILE MET LYS ILE LEU LYS GLY ILE GLY GLU THR PHE CYS SEQRES 5 A 371 GLN HIS TYR THR GLN SER THR ASP GLU GLN PRO GLY SER SEQRES 6 A 371 HIS ILE ASP PHE ALA VAL ASN ARG LEU LYS LEU ALA GLU SEQRES 7 A 371 ILE LEU TYR TYR LYS ILE LEU GLU THR VAL MET VAL GLN SEQRES 8 A 371 GLU THR ARG ARG LEU HIS GLY MET ASP MET SER VAL LEU SEQRES 9 A 371 LEU GLU GLN ASP ILE PHE HIS ARG SER LEU MET ALA CYS SEQRES 10 A 371 CYS LEU GLU ILE VAL LEU PHE ALA TYR SER SER PRO ARG SEQRES 11 A 371 THR PHE PRO TRP ILE ILE GLU VAL LEU ASN LEU GLN PRO SEQRES 12 A 371 PHE TYR PHE TYR LYS VAL ILE GLU VAL VAL ILE ARG SER SEQRES 13 A 371 GLU GLU GLY LEU SER ARG ASP MET VAL LYS HIS LEU ASN SEQRES 14 A 371 SER ILE GLU GLU GLN ILE LEU GLU SER LEU ALA TRP SER SEQRES 15 A 371 HIS ASP SER ALA LEU TRP GLU ALA LEU GLN VAL SER ALA SEQRES 16 A 371 ASN LYS VAL PRO THR CYS GLU GLU VAL ILE PHE PRO ASN SEQRES 17 A 371 ASN PHE GLU THR GLY ASN ASN ARG PRO LYS ARG THR GLY SEQRES 18 A 371 SER LEU ALA LEU PHE TYR ARG LYS VAL TYR HIS LEU ALA SEQRES 19 A 371 SER VAL ARG LEU ARG ASP LEU CYS LEU LYS LEU ASP VAL SEQRES 20 A 371 SER ASN GLU LEU ARG ARG LYS ILE TRP THR CYS PHE GLU SEQRES 21 A 371 PHE THR LEU VAL HIS CYS PRO ASP LEU MET LYS ASP ARG SEQRES 22 A 371 HIS LEU ASP GLN LEU LEU LEU CYS ALA PHE TYR ILE MET SEQRES 23 A 371 ALA LYS VAL THR LYS GLU GLU ARG THR PHE GLN GLU ILE SEQRES 24 A 371 MET LYS SER TYR ARG ASN GLN PRO GLN ALA ASN SER HIS SEQRES 25 A 371 VAL TYR ARG SER VAL LEU LEU LYS SER ILE LYS GLU GLU SEQRES 26 A 371 ARG GLY ASP LEU ILE LYS PHE TYR ASN THR ILE TYR VAL SEQRES 27 A 371 GLY ARG VAL LYS SER PHE ALA LEU LYS TYR ASP LEU ALA SEQRES 28 A 371 ASN GLN ASP HIS MET MET ASP ALA PRO PRO LEU SER PRO SEQRES 29 A 371 PHE PRO HIS ILE LYS GLN GLN SEQRES 1 B 9 ASP LEU TYR CYS TYR GLU GLN LEU ASN HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *111(H2 O) HELIX 1 AA1 THR A 391 VAL A 401 1 11 HELIX 2 AA2 SER A 409 SER A 418 1 10 HELIX 3 AA3 PRO A 423 THR A 443 1 21 HELIX 4 AA4 HIS A 453 GLN A 478 1 26 HELIX 5 AA5 GLU A 479 HIS A 484 1 6 HELIX 6 AA6 MET A 488 GLU A 493 1 6 HELIX 7 AA7 GLN A 494 TYR A 513 1 20 HELIX 8 AA8 PRO A 520 LEU A 526 1 7 HELIX 9 AA9 GLN A 529 TYR A 534 1 6 HELIX 10 AB1 TYR A 534 GLU A 544 1 11 HELIX 11 AB2 SER A 548 SER A 565 1 18 HELIX 12 AB3 LEU A 566 SER A 569 5 4 HELIX 13 AB4 SER A 572 SER A 581 1 10 HELIX 14 AB5 THR A 587 ILE A 592 1 6 HELIX 15 AB6 ARG A 784 LEU A 810 1 27 HELIX 16 AB7 SER A 813 CYS A 831 1 19 HELIX 17 AB8 PRO A 832 LYS A 836 5 5 HELIX 18 AB9 HIS A 839 THR A 855 1 17 HELIX 19 AC1 THR A 860 ARG A 869 1 10 HELIX 20 AC2 SER A 876 SER A 881 1 6 HELIX 21 AC3 ASP A 929 ILE A 937 1 9 HELIX 22 AC4 ILE A 937 LEU A 947 1 11 SHEET 1 AA1 2 VAL A 882 LEU A 883 0 SHEET 2 AA1 2 ARG A 927 GLY A 928 -1 O GLY A 928 N VAL A 882 CISPEP 1 PHE A 519 PRO A 520 0 4.00 CISPEP 2 LEU B 28 ASN B 29 0 8.57 SITE 1 AC1 6 TYR A 442 ARG A 460 ARG A 482 LEU A 483 SITE 2 AC1 6 SER A 515 ARG A 517 SITE 1 AC2 3 ARG A 396 SER A 548 ARG A 549 SITE 1 AC3 3 ARG A 817 ARG A 818 GLN B 27 SITE 1 AC4 3 ARG A 784 GLY A 786 SER A 787 CRYST1 99.690 76.550 74.680 90.00 120.32 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010031 0.000000 0.005866 0.00000 SCALE2 0.000000 0.013063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015512 0.00000