HEADER OXIDOREDUCTASE 13-MAR-15 4YQE TITLE CRYSTAL STRUCTURE OF E. COLI WRBA IN COMPLEX WITH BENZOQUINONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P)H DEHYDROGENASE (QUINONE); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FLAVOPROTEIN WRBA,NAD(P)H:QUINONE OXIDOREDUCTASE, NQO, COMPND 5 NAD(P)H:QUINONE OXIDOREDUCTASE; COMPND 6 EC: 1.6.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: WRBA, B1004, JW0989; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVIN MONONUCLEOTIDE, NAD(P)H DEHYDROGENASE (QUINONE), OXIDATION- KEYWDS 2 REDUCTION, PROTEIN BINDING, REPRESSOR PROTEINS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.DEGTJARIK,J.BRYNDA,O.ETTRICHOVA,J.CAREY,I.KUTA SMATANOVA,R.ETTRICH REVDAT 7 23-OCT-24 4YQE 1 REMARK REVDAT 6 10-JAN-24 4YQE 1 REMARK REVDAT 5 31-JAN-18 4YQE 1 REMARK REVDAT 4 22-JUN-16 4YQE 1 JRNL REVDAT 3 08-JUN-16 4YQE 1 JRNL REVDAT 2 01-JUN-16 4YQE 1 JRNL REVDAT 1 25-MAY-16 4YQE 0 JRNL AUTH O.DEGTJARIK,J.BRYNDA,O.ETTRICHOVA,M.KUTY,D.SINHA, JRNL AUTH 2 I.KUTA SMATANOVA,J.CAREY,R.ETTRICH,D.REHA JRNL TITL QUANTUM CALCULATIONS INDICATE EFFECTIVE ELECTRON TRANSFER JRNL TITL 2 BETWEEN FMN AND BENZOQUINONE IN A NEW CRYSTAL STRUCTURE OF JRNL TITL 3 ESCHERICHIA COLI WRBA. JRNL REF J.PHYS.CHEM.B V. 120 4867 2016 JRNL REFN ISSN 1089-5647 JRNL PMID 27183467 JRNL DOI 10.1021/ACS.JPCB.5B11958 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 71491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3763 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5162 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.1580 REMARK 3 BIN FREE R VALUE SET COUNT : 272 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.046 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.394 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3061 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2841 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4195 ; 1.642 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6568 ; 1.117 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 5.576 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;34.375 ;24.174 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 467 ;10.971 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.897 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3537 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 681 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1562 ; 2.511 ; 1.923 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1561 ; 2.502 ; 1.922 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1958 ; 2.998 ; 2.889 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5901 ; 3.235 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 64 ;28.296 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5982 ;11.336 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 197 B 1 197 10228 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4YQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000205598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDSAPP 0.21 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141939 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 42.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.630 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.1.03 REMARK 200 STARTING MODEL: 2RG1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES/IMIDAZOL, 12.5 % PEG 1000, REMARK 280 12.5% PEG 3350, 12.5% MPD, 0.2M 1,6-HEXANEDIOL, 0.2 M 1-BUTANOL, REMARK 280 0.2 M (RS)-1,2-PROPANEDIOL, 0.2 M 2-PROPANOL, 0.2 M 1,4- REMARK 280 BUTANEDIOL, 0.2 M 1,3-PROPANEDIOL, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.99600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.58950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.58950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.49800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.58950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.58950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.49400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.58950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.58950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.49800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.58950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.58950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 127.49400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.99600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 DIHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = D2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 144 REMARK 465 GLN A 145 REMARK 465 GLU A 146 REMARK 465 LEU A 147 REMARK 465 PHE A 148 REMARK 465 ASP A 149 REMARK 465 VAL A 150 REMARK 465 SER A 151 REMARK 465 GLN A 152 REMARK 465 VAL A 153 REMARK 465 ARG A 154 REMARK 465 VAL B 153 REMARK 465 ARG B 154 REMARK 465 GLY B 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 115 14.86 -159.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLQ A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLQ B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues MHO A 10 REMARK 800 through TYR A 11 bound to SER A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues MHO B 10 REMARK 800 through TYR B 11 bound to SER B 9 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RG1 RELATED DB: PDB REMARK 900 WRBA APOPROTEIN REMARK 900 RELATED ID: 2R96 RELATED DB: PDB REMARK 900 WRBA IN COMPLEX WITH FMN REMARK 900 RELATED ID: 2R97 RELATED DB: PDB REMARK 900 WRBA IN COMPLEX WITH FMN REMARK 900 RELATED ID: 3ZHO RELATED DB: PDB REMARK 900 WRBA IN COMPLEX WITH FMN AT 1.2 A RESOLUTION DBREF 4YQE A 1 197 UNP P0A8G6 NQOR_ECOLI 2 198 DBREF 4YQE B 1 197 UNP P0A8G6 NQOR_ECOLI 2 198 SEQRES 1 A 197 ALA LYS VAL LEU VAL LEU TYR TYR SER MHO TYR GLY HIS SEQRES 2 A 197 ILE GLU THR MET ALA ARG ALA VAL ALA GLU GLY ALA SER SEQRES 3 A 197 LYS VAL ASP GLY ALA GLU VAL VAL VAL LYS ARG VAL PRO SEQRES 4 A 197 GLU THR MET PRO PRO GLN LEU PHE GLU LYS ALA GLY GLY SEQRES 5 A 197 LYS THR GLN THR ALA PRO VAL ALA THR PRO GLN GLU LEU SEQRES 6 A 197 ALA ASP TYR ASP ALA ILE ILE PHE GLY THR PRO THR ARG SEQRES 7 A 197 PHE GLY ASN MET SER GLY GLN MET ARG THR PHE LEU ASP SEQRES 8 A 197 GLN THR GLY GLY LEU TRP ALA SER GLY ALA LEU TYR GLY SEQRES 9 A 197 LYS LEU ALA SER VAL PHE SER SER THR GLY THR GLY GLY SEQRES 10 A 197 GLY GLN GLU GLN THR ILE THR SER THR TRP THR THR LEU SEQRES 11 A 197 ALA HIS HIS GLY MET VAL ILE VAL PRO ILE GLY TYR ALA SEQRES 12 A 197 ALA GLN GLU LEU PHE ASP VAL SER GLN VAL ARG GLY GLY SEQRES 13 A 197 THR PRO TYR GLY ALA THR THR ILE ALA GLY GLY ASP GLY SEQRES 14 A 197 SER ARG GLN PRO SER GLN GLU GLU LEU SER ILE ALA ARG SEQRES 15 A 197 TYR GLN GLY GLU TYR VAL ALA GLY LEU ALA VAL LYS LEU SEQRES 16 A 197 ASN GLY SEQRES 1 B 197 ALA LYS VAL LEU VAL LEU TYR TYR SER MHO TYR GLY HIS SEQRES 2 B 197 ILE GLU THR MET ALA ARG ALA VAL ALA GLU GLY ALA SER SEQRES 3 B 197 LYS VAL ASP GLY ALA GLU VAL VAL VAL LYS ARG VAL PRO SEQRES 4 B 197 GLU THR MET PRO PRO GLN LEU PHE GLU LYS ALA GLY GLY SEQRES 5 B 197 LYS THR GLN THR ALA PRO VAL ALA THR PRO GLN GLU LEU SEQRES 6 B 197 ALA ASP TYR ASP ALA ILE ILE PHE GLY THR PRO THR ARG SEQRES 7 B 197 PHE GLY ASN MET SER GLY GLN MET ARG THR PHE LEU ASP SEQRES 8 B 197 GLN THR GLY GLY LEU TRP ALA SER GLY ALA LEU TYR GLY SEQRES 9 B 197 LYS LEU ALA SER VAL PHE SER SER THR GLY THR GLY GLY SEQRES 10 B 197 GLY GLN GLU GLN THR ILE THR SER THR TRP THR THR LEU SEQRES 11 B 197 ALA HIS HIS GLY MET VAL ILE VAL PRO ILE GLY TYR ALA SEQRES 12 B 197 ALA GLN GLU LEU PHE ASP VAL SER GLN VAL ARG GLY GLY SEQRES 13 B 197 THR PRO TYR GLY ALA THR THR ILE ALA GLY GLY ASP GLY SEQRES 14 B 197 SER ARG GLN PRO SER GLN GLU GLU LEU SER ILE ALA ARG SEQRES 15 B 197 TYR GLN GLY GLU TYR VAL ALA GLY LEU ALA VAL LYS LEU SEQRES 16 B 197 ASN GLY HET MHO A 10 9 HET MHO B 10 9 HET FMN A 201 31 HET PLQ A 202 8 HET PLQ B 201 8 HET FMN B 202 31 HETNAM MHO S-OXYMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM PLQ 1,4-BENZOQUINONE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN PLQ CYCLOHEXA-2,5-DIENE-1,4-DIONE; QUINONE RING OF THE HETSYN 2 PLQ PLASTOQUINONE 9 FORMUL 1 MHO 2(C5 H11 N O3 S) FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 PLQ 2(C6 H4 O2) FORMUL 7 HOH *224(H2 O) HELIX 1 AA1 GLY A 12 LYS A 27 1 16 HELIX 2 AA2 PRO A 43 ALA A 50 1 8 HELIX 3 AA3 PRO A 62 TYR A 68 5 7 HELIX 4 AA4 SER A 83 ASP A 91 1 9 HELIX 5 AA5 THR A 93 GLY A 100 1 8 HELIX 6 AA6 GLY A 118 HIS A 133 1 16 HELIX 7 AA7 SER A 174 GLY A 197 1 24 HELIX 8 AA8 GLY B 12 LYS B 27 1 16 HELIX 9 AA9 PRO B 43 ALA B 50 1 8 HELIX 10 AB1 PRO B 62 TYR B 68 5 7 HELIX 11 AB2 SER B 83 ASP B 91 1 9 HELIX 12 AB3 THR B 93 GLY B 100 1 8 HELIX 13 AB4 GLY B 118 HIS B 133 1 16 HELIX 14 AB5 ALA B 144 PHE B 148 5 5 HELIX 15 AB6 SER B 174 GLY B 197 1 24 SHEET 1 AA1 5 GLU A 32 ARG A 37 0 SHEET 2 AA1 5 LYS A 2 TYR A 7 1 N VAL A 5 O VAL A 34 SHEET 3 AA1 5 ALA A 70 PRO A 76 1 O ILE A 72 N LEU A 4 SHEET 4 AA1 5 LEU A 106 THR A 113 1 O SER A 108 N PHE A 73 SHEET 5 AA1 5 VAL A 136 ILE A 137 1 O VAL A 136 N ALA A 107 SHEET 1 AA2 5 GLU A 32 ARG A 37 0 SHEET 2 AA2 5 LYS A 2 TYR A 7 1 N VAL A 5 O VAL A 34 SHEET 3 AA2 5 ALA A 70 PRO A 76 1 O ILE A 72 N LEU A 4 SHEET 4 AA2 5 LEU A 106 THR A 113 1 O SER A 108 N PHE A 73 SHEET 5 AA2 5 THR A 162 ILE A 164 1 O THR A 163 N THR A 113 SHEET 1 AA3 5 GLU B 32 ARG B 37 0 SHEET 2 AA3 5 LYS B 2 TYR B 7 1 N VAL B 5 O VAL B 34 SHEET 3 AA3 5 ALA B 70 PRO B 76 1 O ILE B 72 N LEU B 4 SHEET 4 AA3 5 LEU B 106 SER B 112 1 O SER B 108 N PHE B 73 SHEET 5 AA3 5 VAL B 136 ILE B 137 1 O VAL B 136 N ALA B 107 LINK C SER A 9 N MHO A 10 1555 1555 1.33 LINK C MHO A 10 N TYR A 11 1555 1555 1.34 LINK C SER B 9 N MHO B 10 1555 1555 1.33 LINK C MHO B 10 N TYR B 11 1555 1555 1.34 SITE 1 AC1 22 SER A 9 MHO A 10 TYR A 11 GLY A 12 SITE 2 AC1 22 HIS A 13 ILE A 14 PRO A 76 THR A 77 SITE 3 AC1 22 ARG A 78 PHE A 79 GLY A 80 SER A 112 SITE 4 AC1 22 THR A 113 GLY A 114 THR A 115 GLY A 116 SITE 5 AC1 22 GLY A 117 HOH A 328 HOH A 329 ASP B 91 SITE 6 AC1 22 HIS B 132 PLQ B 201 SITE 1 AC2 5 TRP A 97 HIS A 132 TYR A 142 PHE B 79 SITE 2 AC2 5 FMN B 202 SITE 1 AC3 5 PHE A 79 FMN A 201 TRP B 97 HIS B 132 SITE 2 AC3 5 TYR B 142 SITE 1 AC4 22 ASP A 91 HIS A 132 PLQ A 202 SER B 9 SITE 2 AC4 22 MHO B 10 TYR B 11 GLY B 12 HIS B 13 SITE 3 AC4 22 ILE B 14 PRO B 76 THR B 77 ARG B 78 SITE 4 AC4 22 PHE B 79 GLY B 80 SER B 112 THR B 113 SITE 5 AC4 22 GLY B 114 THR B 115 GLY B 116 GLY B 117 SITE 6 AC4 22 HOH B 304 HOH B 312 SITE 1 AC5 16 TYR A 8 SER A 9 GLY A 12 HIS A 13 SITE 2 AC5 16 PHE A 47 ALA A 50 GLY A 51 GLY A 52 SITE 3 AC5 16 LYS A 53 ARG A 78 FMN A 201 HOH A 331 SITE 4 AC5 16 HOH A 340 HOH A 341 HOH A 370 HOH A 388 SITE 1 AC6 13 TYR B 8 SER B 9 GLY B 12 HIS B 13 SITE 2 AC6 13 MET B 42 PHE B 47 ALA B 50 GLY B 51 SITE 3 AC6 13 GLY B 52 LYS B 53 ARG B 78 FMN B 202 SITE 4 AC6 13 HOH B 336 CRYST1 61.179 61.179 169.992 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005883 0.00000