HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-MAR-15 4YQR TITLE CRYSTAL STRUCTURE OF TRMD, A M1G37 TRNA METHYLTRANSFERASE WITH SAM- TITLE 2 COMPETITIVE COMPOUNDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM SOURCE 3 11121 / KW20 / RD); SOURCE 4 ORGANISM_TAXID: 71421; SOURCE 5 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 6 GENE: TRMD, HI_0202; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21*(DE3)PGRO7; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRMD, SAM-BINDING, KNOT, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.ELKINS,W.G.BONNETTE,J.A.STUCKEY REVDAT 2 27-SEP-23 4YQR 1 REMARK REVDAT 1 16-MAR-16 4YQR 0 JRNL AUTH P.A.ELKINS,W.G.BONNETTE,J.A.STUCKEY JRNL TITL CRYSTAL STRUCTURE OF TRMD, A M1G37 TRNA METHYLTRANSFERASE JRNL TITL 2 WITH SAM-COMPETITIVE COMPOUNDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0551 - 4.0951 0.99 2344 149 0.1552 0.1748 REMARK 3 2 4.0951 - 3.2518 1.00 2289 146 0.1445 0.1683 REMARK 3 3 3.2518 - 2.8412 1.00 2259 143 0.1704 0.2025 REMARK 3 4 2.8412 - 2.5816 1.00 2270 144 0.1753 0.2033 REMARK 3 5 2.5816 - 2.3966 1.00 2261 144 0.1784 0.2190 REMARK 3 6 2.3966 - 2.2554 1.00 2240 142 0.1693 0.2022 REMARK 3 7 2.2554 - 2.1425 1.00 2229 142 0.1621 0.2168 REMARK 3 8 2.1425 - 2.0492 1.00 2239 141 0.1673 0.2068 REMARK 3 9 2.0492 - 1.9704 1.00 2244 143 0.1681 0.1975 REMARK 3 10 1.9704 - 1.9024 1.00 2214 141 0.1729 0.2027 REMARK 3 11 1.9024 - 1.8429 1.00 2221 141 0.1658 0.2161 REMARK 3 12 1.8429 - 1.7902 1.00 2229 141 0.1756 0.2238 REMARK 3 13 1.7902 - 1.7431 1.00 2219 142 0.1877 0.2199 REMARK 3 14 1.7431 - 1.7006 0.99 2227 141 0.2118 0.2648 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1963 REMARK 3 ANGLE : 1.319 2666 REMARK 3 CHIRALITY : 0.065 296 REMARK 3 PLANARITY : 0.007 351 REMARK 3 DIHEDRAL : 12.533 749 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -1:159) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0452 31.5196 -11.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.1060 T22: 0.1370 REMARK 3 T33: 0.1464 T12: -0.0235 REMARK 3 T13: -0.0223 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.7464 L22: 1.0553 REMARK 3 L33: 3.2615 L12: -0.3484 REMARK 3 L13: -0.5891 L23: 0.3842 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0072 S13: -0.0284 REMARK 3 S21: -0.0999 S22: -0.0120 S23: 0.1168 REMARK 3 S31: -0.0238 S32: -0.2732 S33: -0.0064 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 160:192) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7907 38.9966 22.1857 REMARK 3 T TENSOR REMARK 3 T11: 0.1629 T22: 0.2043 REMARK 3 T33: 0.1961 T12: 0.0364 REMARK 3 T13: 0.0004 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.6924 L22: 5.0835 REMARK 3 L33: 2.5613 L12: -1.1949 REMARK 3 L13: -0.7321 L23: -1.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.1752 S12: -0.1330 S13: -0.1557 REMARK 3 S21: -0.0071 S22: 0.3364 S23: 0.4155 REMARK 3 S31: -0.2580 S32: -0.5025 S33: -0.0102 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 193:214) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9147 42.1267 25.9359 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.3242 REMARK 3 T33: 0.2720 T12: 0.0971 REMARK 3 T13: 0.0521 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 3.3909 L22: 5.8382 REMARK 3 L33: 8.1962 L12: -0.3761 REMARK 3 L13: 1.5298 L23: -3.9595 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.7081 S13: -0.2611 REMARK 3 S21: 0.2922 S22: 0.2595 S23: 0.6817 REMARK 3 S31: 0.1862 S32: -0.1823 S33: -0.1225 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 215:246) REMARK 3 ORIGIN FOR THE GROUP (A): -39.1166 53.2718 16.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1856 REMARK 3 T33: 0.2127 T12: 0.0536 REMARK 3 T13: -0.0341 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 6.6511 L22: 3.5137 REMARK 3 L33: 5.0171 L12: 1.3722 REMARK 3 L13: -1.2148 L23: 0.7536 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: -0.3105 S13: 0.4027 REMARK 3 S21: -0.0986 S22: -0.0627 S23: 0.2688 REMARK 3 S31: -0.3814 S32: -0.1748 S33: 0.0381 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : UNKNOWN REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35819 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P9P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION:( 12/MG/ML IN 100MM REMARK 280 HEPES PH 7.5, 150MM NACL, 10MM MGCL2 2MM DTT) WELL SOLUTION: (20% REMARK 280 PEG3,350 AND 0.2M POTASSIUM CITRATE TRIBASIC MONOHYDRATE). 4UL REMARK 280 OF S-ADENOSYL METHIONINE IN WATER WERE ADDED TO 100UL OF PROTEIN REMARK 280 AND ALLOWED TO INCUBATE ON ICE FOR 1 HOUR BEFORE PROTEIN WAS REMARK 280 MIXED WITH WELL AT 1:1 RATIO.SEEDING USED TO IMPROVE CRYSTALS. REMARK 280 COMPOUND STOCK SOLUTIONS (EITHER 100MM OR 1M STOCKS) WERE ADDED REMARK 280 UP TO A FINAL DROP CONCENTRATION OF 4.8% DMSO. CRYSTALS WERE REMARK 280 SOAKED FOR 4-6 HOURS. 20% GLYCEROL IN WELL SOLUTION WAS USED AS REMARK 280 CRYOPROTECTANT FOR A QUICK DIP OF CRYSTAL IN LIQUID N2., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.93200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.09620 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.49667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.93200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.09620 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.49667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.93200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.09620 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.49667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.93200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.09620 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.49667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.93200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.09620 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.49667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.93200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.09620 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.49667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.19241 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 118.99333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.19241 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 118.99333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.19241 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 118.99333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.19241 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 118.99333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.19241 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 118.99333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.19241 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 118.99333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 538 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 558 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 561 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 566 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 LYS A 161A REMARK 465 GLN A 161B REMARK 465 ALA A 161C REMARK 465 SER A 161D REMARK 465 ALA A 161E REMARK 465 GLU A 161F REMARK 465 ASP A 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 NZ REMARK 470 LYS A 45 CE NZ REMARK 470 ARG A 52 NE CZ NH1 NH2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 GLN A 106 CG CD OE1 NE2 REMARK 470 GLU A 167 N CA C O REMARK 470 HIS A 200 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 206 NZ REMARK 470 GLU A 225 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 -142.79 60.13 REMARK 500 PHE A 171 4.71 -65.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4HQ A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YPW RELATED DB: PDB REMARK 900 RELATED ID: 4YPX RELATED DB: PDB REMARK 900 RELATED ID: 4YPZ RELATED DB: PDB REMARK 900 RELATED ID: 4YQ0 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ1 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ2 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ3 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ4 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ5 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ6 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ7 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ8 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ9 RELATED DB: PDB REMARK 900 RELATED ID: 4YQA RELATED DB: PDB REMARK 900 RELATED ID: 4YQB RELATED DB: PDB REMARK 900 RELATED ID: 4YQC RELATED DB: PDB REMARK 900 RELATED ID: 4YQG RELATED DB: PDB REMARK 900 RELATED ID: 4YQI RELATED DB: PDB REMARK 900 RELATED ID: 4YQJ RELATED DB: PDB REMARK 900 RELATED ID: 4YQK RELATED DB: PDB REMARK 900 RELATED ID: 4YQL RELATED DB: PDB REMARK 900 RELATED ID: 4YQN RELATED DB: PDB REMARK 900 RELATED ID: 4YQO RELATED DB: PDB REMARK 900 RELATED ID: 4YQP RELATED DB: PDB REMARK 900 RELATED ID: 4YQQ RELATED DB: PDB REMARK 900 RELATED ID: 4YQS RELATED DB: PDB REMARK 900 RELATED ID: 4YQT RELATED DB: PDB REMARK 900 RELATED ID: 4YPY RELATED DB: PDB DBREF 4YQR A 1 246 UNP P43912 TRMD_HAEIN 1 246 SEQADV 4YQR GLY A -7 UNP P43912 EXPRESSION TAG SEQADV 4YQR LEU A -6 UNP P43912 EXPRESSION TAG SEQADV 4YQR VAL A -5 UNP P43912 EXPRESSION TAG SEQADV 4YQR PRO A -4 UNP P43912 EXPRESSION TAG SEQADV 4YQR ARG A -3 UNP P43912 EXPRESSION TAG SEQADV 4YQR GLY A -2 UNP P43912 EXPRESSION TAG SEQADV 4YQR SER A -1 UNP P43912 EXPRESSION TAG SEQADV 4YQR HIS A 0 UNP P43912 EXPRESSION TAG SEQRES 1 A 254 GLY LEU VAL PRO ARG GLY SER HIS MET TRP ILE GLY VAL SEQRES 2 A 254 ILE SER LEU PHE PRO GLU MET PHE LYS ALA ILE THR GLU SEQRES 3 A 254 PHE GLY VAL THR GLY ARG ALA VAL LYS HIS ASN LEU LEU SEQRES 4 A 254 LYS VAL GLU CYS TRP ASN PRO ARG ASP PHE THR PHE ASP SEQRES 5 A 254 LYS HIS LYS THR VAL ASP ASP ARG PRO TYR GLY GLY GLY SEQRES 6 A 254 PRO GLY MET LEU MET MET VAL GLN PRO LEU ARG ASP ALA SEQRES 7 A 254 ILE HIS THR ALA LYS ALA ALA ALA GLY GLU GLY ALA LYS SEQRES 8 A 254 VAL ILE TYR LEU SER PRO GLN GLY ARG LYS LEU ASP GLN SEQRES 9 A 254 GLY GLY VAL THR GLU LEU ALA GLN ASN GLN LYS LEU ILE SEQRES 10 A 254 LEU VAL CYS GLY ARG TYR GLU GLY ILE ASP GLU ARG LEU SEQRES 11 A 254 ILE GLN THR GLU ILE ASP GLU GLU TRP SER ILE GLY ASP SEQRES 12 A 254 TYR VAL LEU THR GLY GLY GLU LEU PRO ALA MET THR LEU SEQRES 13 A 254 ILE ASP ALA VAL ALA ARG PHE ILE PRO GLY VAL LEU GLY SEQRES 14 A 254 LYS GLN ALA SER ALA GLU GLU ASP SER PHE ALA ASP GLY SEQRES 15 A 254 LEU LEU ASP CYS PRO HIS TYR THR ARG PRO GLU VAL LEU SEQRES 16 A 254 GLU GLY LEU THR VAL PRO PRO VAL LEU MET SER GLY HIS SEQRES 17 A 254 HIS GLU GLU ILE ARG LYS TRP ARG LEU LYS GLN SER LEU SEQRES 18 A 254 GLN ARG THR TRP LEU ARG ARG PRO GLU LEU LEU GLU GLY SEQRES 19 A 254 LEU ALA LEU THR ASP GLU GLN ARG LYS LEU LEU LYS GLU SEQRES 20 A 254 ALA GLN ALA GLU HIS ASN SER HET 4HQ A 301 28 HETNAM 4HQ (4-AMINO-1,2,5-OXADIAZOL-3-YL)(4-METHYLPIPERAZIN-1-YL) HETNAM 2 4HQ METHANONE FORMUL 2 4HQ C8 H13 N5 O2 FORMUL 3 HOH *168(H2 O) HELIX 1 AA1 PHE A 9 MET A 12 5 4 HELIX 2 AA2 PHE A 13 GLU A 18 1 6 HELIX 3 AA3 PHE A 19 HIS A 28 1 10 HELIX 4 AA4 ASN A 37 THR A 42 5 6 HELIX 5 AA5 MET A 63 GLY A 79 1 17 HELIX 6 AA6 ASP A 95 ALA A 103 1 9 HELIX 7 AA7 ASP A 119 ILE A 127 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 193 SER A 198 5 6 HELIX 10 AB1 HIS A 200 ARG A 220 1 21 HELIX 11 AB2 ARG A 220 GLU A 225 1 6 HELIX 12 AB3 THR A 230 ASN A 245 1 16 SHEET 1 AA1 6 LEU A 31 TRP A 36 0 SHEET 2 AA1 6 MET A 1 ILE A 6 1 N ILE A 3 O LYS A 32 SHEET 3 AA1 6 LYS A 107 VAL A 111 1 O LEU A 110 N GLY A 4 SHEET 4 AA1 6 LYS A 83 LEU A 87 1 N ILE A 85 O ILE A 109 SHEET 5 AA1 6 GLU A 129 SER A 132 1 O GLU A 129 N TYR A 86 SHEET 6 AA1 6 ARG A 92 LYS A 93 1 N ARG A 92 O SER A 132 SHEET 1 AA2 2 ASP A 50 ASP A 51 0 SHEET 2 AA2 2 LEU A 61 MET A 62 -1 O LEU A 61 N ASP A 51 SHEET 1 AA3 2 VAL A 186 LEU A 187 0 SHEET 2 AA3 2 LEU A 190 THR A 191 -1 O LEU A 190 N LEU A 187 CISPEP 1 ARG A 183 PRO A 184 0 3.02 SITE 1 AC1 12 LEU A 87 SER A 88 PRO A 89 TYR A 115 SITE 2 AC1 12 GLY A 117 SER A 132 ILE A 133 GLY A 134 SITE 3 AC1 12 TYR A 136 VAL A 137 LEU A 138 PRO A 144 CRYST1 93.864 93.864 178.490 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010654 0.006151 0.000000 0.00000 SCALE2 0.000000 0.012302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005603 0.00000