HEADER    TRANSFERASE/DNA                         14-MAR-15   4YR3              
TITLE     MUTANT HUMAN DNA POLYMERASE ETA R61M INSERTING DCTP OPPOSITE TEMPLATE 
TITLE    2 G                                                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE ETA;                                        
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: RAD30 HOMOLOG A,XERODERMA PIGMENTOSUM VARIANT TYPE PROTEIN; 
COMPND   5 EC: 2.7.7.7;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: DNA (5'-D(P*TP*GP*AP*TP*GP*AP*CP*GP*CP*T)-3');             
COMPND  10 CHAIN: T;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 MOL_ID: 3;                                                           
COMPND  13 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3');                    
COMPND  14 CHAIN: P;                                                            
COMPND  15 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: POLH, RAD30, RAD30A, XPV;                                      
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG';        
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 866768;                                     
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 SYNTHETIC: YES;                                                      
SOURCE  10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  11 ORGANISM_TAXID: 32630;                                               
SOURCE  12 MOL_ID: 3;                                                           
SOURCE  13 SYNTHETIC: YES;                                                      
SOURCE  14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  15 ORGANISM_TAXID: 32630                                                
KEYWDS    DCTP TEMPLATE G, TRANSFERASE-DNA COMPLEX                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.SU,A.PATRA,J.M.HARP,M.EGLI,F.P.GUENGERICH                           
REVDAT   6   27-SEP-23 4YR3    1       LINK                                     
REVDAT   5   04-DEC-19 4YR3    1       REMARK                                   
REVDAT   4   20-SEP-17 4YR3    1       SOURCE JRNL   REMARK                     
REVDAT   3   08-JUL-15 4YR3    1       JRNL                                     
REVDAT   2   20-MAY-15 4YR3    1       JRNL                                     
REVDAT   1   13-MAY-15 4YR3    0                                                
JRNL        AUTH   Y.SU,A.PATRA,J.M.HARP,M.EGLI,F.P.GUENGERICH                  
JRNL        TITL   ROLES OF RESIDUES ARG-61 AND GLN-38 OF HUMAN DNA POLYMERASE  
JRNL        TITL 2 ETA IN BYPASS OF DEOXYGUANOSINE AND                          
JRNL        TITL 3 7,8-DIHYDRO-8-OXO-2'-DEOXYGUANOSINE.                         
JRNL        REF    J.BIOL.CHEM.                  V. 290 15921 2015              
JRNL        REFN                   ESSN 1083-351X                               
JRNL        PMID   25947374                                                     
JRNL        DOI    10.1074/JBC.M115.653691                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.00 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: DEV_1839)                     
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 49.36                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.350                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 30389                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.178                           
REMARK   3   R VALUE            (WORKING SET) : 0.176                           
REMARK   3   FREE R VALUE                     : 0.219                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.840                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1471                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 49.3700 -  4.4440    0.99     2696   127  0.1854 0.2193        
REMARK   3     2  4.4440 -  3.5276    0.99     2662   130  0.1442 0.1660        
REMARK   3     3  3.5276 -  3.0818    0.99     2656   128  0.1549 0.2131        
REMARK   3     4  3.0818 -  2.8000    0.99     2657   124  0.1821 0.2259        
REMARK   3     5  2.8000 -  2.5994    0.99     2609   142  0.1769 0.2137        
REMARK   3     6  2.5994 -  2.4461    0.99     2655   121  0.1889 0.2401        
REMARK   3     7  2.4461 -  2.3236    0.99     2576   173  0.1784 0.2286        
REMARK   3     8  2.3236 -  2.2225    0.98     2584   152  0.1846 0.2214        
REMARK   3     9  2.2225 -  2.1369    0.98     2609   105  0.1906 0.2835        
REMARK   3    10  2.1369 -  2.0632    0.98     2613   129  0.2035 0.2668        
REMARK   3    11  2.0632 -  1.9986    0.98     2601   140  0.2353 0.2617        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.220            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.560           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.009           3800                                  
REMARK   3   ANGLE     :  1.182           5230                                  
REMARK   3   CHIRALITY :  0.044            588                                  
REMARK   3   PLANARITY :  0.005            610                                  
REMARK   3   DIHEDRAL  : 19.792           1444                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 1                                          
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    SELECTION: ALL                                                    
REMARK   3    ORIGIN FOR THE GROUP (A):  -0.1931  87.1375  32.1371              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.1417 T22:   0.1365                                     
REMARK   3      T33:   0.1305 T12:   0.0028                                     
REMARK   3      T13:   0.0044 T23:   0.0101                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.3218 L22:   0.6011                                     
REMARK   3      L33:   0.5188 L12:  -0.1667                                     
REMARK   3      L13:   0.0174 L23:  -0.0344                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0619 S12:   0.0198 S13:   0.0274                       
REMARK   3      S21:  -0.0390 S22:  -0.0914 S23:  -0.0418                       
REMARK   3      S31:  -0.0261 S32:   0.0746 S33:   0.0220                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4YR3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-15.                  
REMARK 100 THE DEPOSITION ID IS D_1000207917.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 21-JUN-14                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : NULL                               
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 21-ID-G                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97856                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 300 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 30423                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.000                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.7                               
REMARK 200  DATA REDUNDANCY                : 5.800                              
REMARK 200  R MERGE                    (I) : 0.12100                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 12.3000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.03                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.1                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 5.70                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.81300                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.230                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 4O3N                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 41.65                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: NAMES (PH 6.0), POLYETHYLENE GLYCOL      
REMARK 280  MONOMETHYL ETHER 2000, AND CALCIUM CHLORIDE, VAPOR DIFFUSION,       
REMARK 280  HANGING DROP, TEMPERATURE 291K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+1/3                                            
REMARK 290       3555   -X+Y,-X,Z+2/3                                           
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+5/6                                            
REMARK 290       6555   X-Y,X,Z+1/6                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       27.31767            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       54.63533            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       40.97650            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       68.29417            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       13.65883            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 21160 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     PRO A   154                                                      
REMARK 465     THR A   155                                                      
REMARK 465     THR A   156                                                      
REMARK 465     ALA A   157                                                      
REMARK 465     GLU A   158                                                      
REMARK 465     GLU A   159                                                      
REMARK 465     GLY A   374                                                      
REMARK 465     ASP A   375                                                      
REMARK 465     LYS A   376                                                      
REMARK 465     ARG A   377                                                      
REMARK 465     GLN A   412                                                      
REMARK 465      DC T     1                                                      
REMARK 465      DA T     2                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     MET A   1    CB   CG   SD   CE                                   
REMARK 470     ALA A   2    CB                                                  
REMARK 470     GLN A 126    CD   OE1  NE2                                       
REMARK 470     GLN A 130    CG   CD   OE1  NE2                                  
REMARK 470     LYS A 131    CB   CG   CD   CE   NZ                              
REMARK 470     LEU A 132    CG   CD1  CD2                                       
REMARK 470     GLN A 133    CB   CG   CD   OE1  NE2                             
REMARK 470     GLN A 135    CD   OE1  NE2                                       
REMARK 470     GLN A 152    CG   CD   OE1  NE2                                  
REMARK 470     GLY A 153    CA   C    O                                         
REMARK 470     VAL A 161    CG2                                                 
REMARK 470     GLN A 162    CG   CD   OE1  NE2                                  
REMARK 470     LYS A 163    CD   CE   NZ                                        
REMARK 470     GLN A 179    CG   CD   OE1  NE2                                  
REMARK 470     ASP A 181    CG   OD1  OD2                                       
REMARK 470     ASN A 182    OD1  ND2                                            
REMARK 470     LYS A 293    CG   CD   CE   NZ                                   
REMARK 470     LYS A 328    CG   CD   CE   NZ                                   
REMARK 470     ARG A 334    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LEU A 378    CG   CD1  CD2                                       
REMARK 470     SER A 380    CB   OG                                             
REMARK 470     LEU A 381    CD1  CD2                                            
REMARK 470     THR A 413    OG1  CG2                                            
REMARK 470     LYS A 428    CD   CE   NZ                                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DA P   7   O4' -  C1' -  N9  ANGL. DEV. =   2.1 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    CYS A  16       64.24     22.49                                   
REMARK 500    TYR A  39      153.42     62.87                                   
REMARK 500    TYR A  39       90.25     73.00                                   
REMARK 500    GLN A 133       33.94    -90.00                                   
REMARK 500    SER A 217     -154.42   -155.20                                   
REMARK 500    SER A 257       -7.83     94.40                                   
REMARK 500    LEU A 381      142.68   -172.79                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A 932        DISTANCE =  6.63 ANGSTROMS                       
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A 502  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A  13   OD1                                                    
REMARK 620 2 ASP A  13   OD2  50.1                                              
REMARK 620 3 MET A  14   O   106.6  79.6                                        
REMARK 620 4 ASP A 115   OD2  78.8 116.7  83.2                                  
REMARK 620 5 DCP A 501   O1A  83.3 115.1 165.2  88.0                            
REMARK 620 6 DCP A 501   O1B 155.9 153.7  88.4  84.6  78.9                      
REMARK 620 7 DCP A 501   O1G 113.1  80.2 103.9 162.9  81.5  80.2                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A 503  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A  13   OD1                                                    
REMARK 620 2 ASP A 115   OD1  91.1                                              
REMARK 620 3 GLU A 116   OE2 105.3 101.6                                        
REMARK 620 4 DCP A 501   O1A  88.0  92.9 159.9                                  
REMARK 620 5 HOH A 771   O    88.7 171.1  87.0  78.2                            
REMARK 620 6  DT P   8   O3' 167.6  76.6  77.2  93.1 103.6                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue DCP A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4YQW   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4YR0   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4YR2   RELATED DB: PDB                                   
DBREF  4YR3 A    1   432  UNP    Q9Y253   POLH_HUMAN       1    432             
DBREF  4YR3 T    1    12  PDB    4YR3     4YR3             1     12             
DBREF  4YR3 P    1     8  PDB    4YR3     4YR3             1      8             
SEQADV 4YR3 GLY A   -2  UNP  Q9Y253              EXPRESSION TAG                 
SEQADV 4YR3 PRO A   -1  UNP  Q9Y253              EXPRESSION TAG                 
SEQADV 4YR3 HIS A    0  UNP  Q9Y253              EXPRESSION TAG                 
SEQADV 4YR3 MET A   61  UNP  Q9Y253    ARG    61 ENGINEERED MUTATION            
SEQRES   1 A  435  GLY PRO HIS MET ALA THR GLY GLN ASP ARG VAL VAL ALA          
SEQRES   2 A  435  LEU VAL ASP MET ASP CYS PHE PHE VAL GLN VAL GLU GLN          
SEQRES   3 A  435  ARG GLN ASN PRO HIS LEU ARG ASN LYS PRO CYS ALA VAL          
SEQRES   4 A  435  VAL GLN TYR LYS SER TRP LYS GLY GLY GLY ILE ILE ALA          
SEQRES   5 A  435  VAL SER TYR GLU ALA ARG ALA PHE GLY VAL THR MET SER          
SEQRES   6 A  435  MET TRP ALA ASP ASP ALA LYS LYS LEU CYS PRO ASP LEU          
SEQRES   7 A  435  LEU LEU ALA GLN VAL ARG GLU SER ARG GLY LYS ALA ASN          
SEQRES   8 A  435  LEU THR LYS TYR ARG GLU ALA SER VAL GLU VAL MET GLU          
SEQRES   9 A  435  ILE MET SER ARG PHE ALA VAL ILE GLU ARG ALA SER ILE          
SEQRES  10 A  435  ASP GLU ALA TYR VAL ASP LEU THR SER ALA VAL GLN GLU          
SEQRES  11 A  435  ARG LEU GLN LYS LEU GLN GLY GLN PRO ILE SER ALA ASP          
SEQRES  12 A  435  LEU LEU PRO SER THR TYR ILE GLU GLY LEU PRO GLN GLY          
SEQRES  13 A  435  PRO THR THR ALA GLU GLU THR VAL GLN LYS GLU GLY MET          
SEQRES  14 A  435  ARG LYS GLN GLY LEU PHE GLN TRP LEU ASP SER LEU GLN          
SEQRES  15 A  435  ILE ASP ASN LEU THR SER PRO ASP LEU GLN LEU THR VAL          
SEQRES  16 A  435  GLY ALA VAL ILE VAL GLU GLU MET ARG ALA ALA ILE GLU          
SEQRES  17 A  435  ARG GLU THR GLY PHE GLN CYS SER ALA GLY ILE SER HIS          
SEQRES  18 A  435  ASN LYS VAL LEU ALA LYS LEU ALA CYS GLY LEU ASN LYS          
SEQRES  19 A  435  PRO ASN ARG GLN THR LEU VAL SER HIS GLY SER VAL PRO          
SEQRES  20 A  435  GLN LEU PHE SER GLN MET PRO ILE ARG LYS ILE ARG SER          
SEQRES  21 A  435  LEU GLY GLY LYS LEU GLY ALA SER VAL ILE GLU ILE LEU          
SEQRES  22 A  435  GLY ILE GLU TYR MET GLY GLU LEU THR GLN PHE THR GLU          
SEQRES  23 A  435  SER GLN LEU GLN SER HIS PHE GLY GLU LYS ASN GLY SER          
SEQRES  24 A  435  TRP LEU TYR ALA MET CYS ARG GLY ILE GLU HIS ASP PRO          
SEQRES  25 A  435  VAL LYS PRO ARG GLN LEU PRO LYS THR ILE GLY CYS SER          
SEQRES  26 A  435  LYS ASN PHE PRO GLY LYS THR ALA LEU ALA THR ARG GLU          
SEQRES  27 A  435  GLN VAL GLN TRP TRP LEU LEU GLN LEU ALA GLN GLU LEU          
SEQRES  28 A  435  GLU GLU ARG LEU THR LYS ASP ARG ASN ASP ASN ASP ARG          
SEQRES  29 A  435  VAL ALA THR GLN LEU VAL VAL SER ILE ARG VAL GLN GLY          
SEQRES  30 A  435  ASP LYS ARG LEU SER SER LEU ARG ARG CYS CYS ALA LEU          
SEQRES  31 A  435  THR ARG TYR ASP ALA HIS LYS MET SER HIS ASP ALA PHE          
SEQRES  32 A  435  THR VAL ILE LYS ASN CYS ASN THR SER GLY ILE GLN THR          
SEQRES  33 A  435  GLU TRP SER PRO PRO LEU THR MET LEU PHE LEU CYS ALA          
SEQRES  34 A  435  THR LYS PHE SER ALA SER                                      
SEQRES   1 T   12   DC  DA  DT  DG  DA  DT  DG  DA  DC  DG  DC  DT              
SEQRES   1 P    8   DA  DG  DC  DG  DT  DC  DA  DT                              
HET    DCP  A 501      28                                                       
HET     CA  A 502       1                                                       
HET     CA  A 503       1                                                       
HETNAM     DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE                                 
HETNAM      CA CALCIUM ION                                                      
FORMUL   4  DCP    C9 H16 N3 O13 P3                                             
FORMUL   5   CA    2(CA 2+)                                                     
FORMUL   7  HOH   *390(H2 O)                                                    
HELIX    1 AA1 CYS A   16  ASN A   26  1                                  11    
HELIX    2 AA2 PRO A   27  ARG A   30  5                                   4    
HELIX    3 AA3 SER A   51  ALA A   56  1                                   6    
HELIX    4 AA4 TRP A   64  CYS A   72  1                                   9    
HELIX    5 AA5 LEU A   89  ALA A  107  1                                  19    
HELIX    6 AA6 LEU A  121  LEU A  132  1                                  12    
HELIX    7 AA7 SER A  138  LEU A  142  5                                   5    
HELIX    8 AA8 GLN A  162  LEU A  178  1                                  17    
HELIX    9 AA9 SER A  185  GLY A  209  1                                  25    
HELIX   10 AB1 ASN A  219  GLY A  228  1                                  10    
HELIX   11 AB2 SER A  239  GLY A  241  5                                   3    
HELIX   12 AB3 SER A  242  GLN A  249  1                                   8    
HELIX   13 AB4 MET A  250  ILE A  255  5                                   6    
HELIX   14 AB5 GLY A  260  GLY A  271  1                                  12    
HELIX   15 AB6 TYR A  274  PHE A  281  5                                   8    
HELIX   16 AB7 THR A  282  GLY A  291  1                                  10    
HELIX   17 AB8 GLY A  291  CYS A  302  1                                  12    
HELIX   18 AB9 PRO A  326  ALA A  330  5                                   5    
HELIX   19 AC1 ARG A  334  ASP A  360  1                                  27    
HELIX   20 AC2 ASP A  391  LYS A  404  1                                  14    
HELIX   21 AC3 ASN A  405  ASN A  407  5                                   3    
SHEET    1 AA1 6 ILE A 109  SER A 113  0                                        
SHEET    2 AA1 6 GLU A 116  ASP A 120 -1  O  TYR A 118   N  GLU A 110           
SHEET    3 AA1 6 VAL A   9  MET A  14 -1  N  VAL A  12   O  ALA A 117           
SHEET    4 AA1 6 CYS A 212  SER A 217 -1  O  SER A 213   N  ASP A  13           
SHEET    5 AA1 6 GLN A 235  LEU A 237  1  O  THR A 236   N  ILE A 216           
SHEET    6 AA1 6 THR A 145  ILE A 147  1  N  TYR A 146   O  LEU A 237           
SHEET    1 AA2 3 GLY A  46  VAL A  50  0                                        
SHEET    2 AA2 3 CYS A  34  GLN A  38 -1  N  VAL A  36   O  ILE A  48           
SHEET    3 AA2 3 LEU A  76  GLN A  79  1  O  ALA A  78   N  ALA A  35           
SHEET    1 AA3 2 GLU A  82  SER A  83  0                                        
SHEET    2 AA3 2 LYS A  86  ALA A  87 -1  O  LYS A  86   N  SER A  83           
SHEET    1 AA4 3 ILE A 319  ASN A 324  0                                        
SHEET    2 AA4 3 GLU A 414  ALA A 431 -1  O  ALA A 426   N  ILE A 319           
SHEET    3 AA4 3 LEU A 331  THR A 333 -1  N  ALA A 332   O  TRP A 415           
SHEET    1 AA5 4 ILE A 319  ASN A 324  0                                        
SHEET    2 AA5 4 GLU A 414  ALA A 431 -1  O  ALA A 426   N  ILE A 319           
SHEET    3 AA5 4 ARG A 361  VAL A 372 -1  N  VAL A 367   O  CYS A 425           
SHEET    4 AA5 4 LEU A 381  ALA A 386 -1  O  ARG A 383   N  VAL A 368           
LINK         OD1 ASP A  13                CA    CA A 502     1555   1555  2.67  
LINK         OD2 ASP A  13                CA    CA A 502     1555   1555  2.43  
LINK         OD1 ASP A  13                CA    CA A 503     1555   1555  2.30  
LINK         O   MET A  14                CA    CA A 502     1555   1555  2.31  
LINK         OD2 ASP A 115                CA    CA A 502     1555   1555  2.31  
LINK         OD1 ASP A 115                CA    CA A 503     1555   1555  2.34  
LINK         OE2 GLU A 116                CA    CA A 503     1555   1555  2.28  
LINK         O1A DCP A 501                CA    CA A 502     1555   1555  2.29  
LINK         O1B DCP A 501                CA    CA A 502     1555   1555  2.31  
LINK         O1G DCP A 501                CA    CA A 502     1555   1555  2.30  
LINK         O1A DCP A 501                CA    CA A 503     1555   1555  2.46  
LINK        CA    CA A 503                 O   HOH A 771     1555   1555  2.42  
LINK        CA    CA A 503                 O3'  DT P   8     1555   1555  2.53  
CISPEP   1 LEU A  150    PRO A  151          0         2.62                     
CISPEP   2 LYS A  231    PRO A  232          0        -5.10                     
CISPEP   3 SER A  416    PRO A  417          0        -8.07                     
SITE     1 AC1 26 ASP A  13  MET A  14  ASP A  15  CYS A  16                    
SITE     2 AC1 26 PHE A  17  PHE A  18  ILE A  48  ALA A  49                    
SITE     3 AC1 26 TYR A  52  ARG A  55  MET A  61  ASP A 115                    
SITE     4 AC1 26 LYS A 231   CA A 502   CA A 503  HOH A 623                    
SITE     5 AC1 26 HOH A 646  HOH A 666  HOH A 690  HOH A 709                    
SITE     6 AC1 26 HOH A 768  HOH A 771  HOH A 791   DT P   8                    
SITE     7 AC1 26 HOH P 101   DG T   4                                          
SITE     1 AC2  5 ASP A  13  MET A  14  ASP A 115  DCP A 501                    
SITE     2 AC2  5  CA A 503                                                     
SITE     1 AC3  7 ASP A  13  ASP A 115  GLU A 116  DCP A 501                    
SITE     2 AC3  7  CA A 502  HOH A 771   DT P   8                               
CRYST1   98.710   98.710   81.953  90.00  90.00 120.00 P 61          6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010131  0.005849  0.000000        0.00000                         
SCALE2      0.000000  0.011698  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.012202        0.00000