HEADER IMMUNE SYSTEM 14-MAR-15 4YR6 TITLE FAB FRAGMENT OF 5G6 IN COMPLEX WITH EPITOPE PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN OF 5G6; COMPND 3 CHAIN: A, D; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: LIGHT CHAIN OF 5G6; COMPND 6 CHAIN: B, E; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: ACE-LYS-LEU-ARG-GLY-VAL-LEU-GLN-GLY-HIS-LEU; COMPND 9 CHAIN: C, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS GPIBA SHEDDING INHIBITOR, 5G6, KL10, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.TAO,X.MO,R.LI REVDAT 4 08-NOV-23 4YR6 1 REMARK REVDAT 3 13-MAY-20 4YR6 1 JRNL REVDAT 2 05-APR-17 4YR6 1 SOURCE REVDAT 1 09-MAR-16 4YR6 0 JRNL AUTH Y.TAO,X.ZHANG,X.LIANG,J.ZANG,X.MO,R.LI JRNL TITL STRUCTURAL BASIS FOR THE SPECIFIC INHIBITION OF GLYCOPROTEIN JRNL TITL 2 IB ALPHA SHEDDING BY AN INHIBITORY ANTIBODY. JRNL REF SCI REP V. 6 24789 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27102061 JRNL DOI 10.1038/SREP24789 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 55282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1618 - 6.5598 0.99 2800 175 0.2405 0.2562 REMARK 3 2 6.5598 - 5.2092 1.00 2726 142 0.2095 0.2276 REMARK 3 3 5.2092 - 4.5514 0.99 2671 136 0.1566 0.1744 REMARK 3 4 4.5514 - 4.1356 0.98 2651 129 0.1565 0.1767 REMARK 3 5 4.1356 - 3.8394 1.00 2664 145 0.1803 0.1899 REMARK 3 6 3.8394 - 3.6131 1.00 2654 148 0.1908 0.2553 REMARK 3 7 3.6131 - 3.4322 1.00 2621 157 0.2014 0.2700 REMARK 3 8 3.4322 - 3.2829 1.00 2654 145 0.2228 0.2847 REMARK 3 9 3.2829 - 3.1565 1.00 2656 140 0.2312 0.2687 REMARK 3 10 3.1565 - 3.0476 1.00 2641 144 0.2379 0.3065 REMARK 3 11 3.0476 - 2.9523 0.99 2644 140 0.2410 0.3197 REMARK 3 12 2.9523 - 2.8680 0.99 2605 137 0.2476 0.3022 REMARK 3 13 2.8680 - 2.7925 0.99 2617 138 0.2466 0.3510 REMARK 3 14 2.7925 - 2.7244 0.99 2635 138 0.2520 0.3175 REMARK 3 15 2.7244 - 2.6624 0.99 2623 137 0.2465 0.2729 REMARK 3 16 2.6624 - 2.6058 0.98 2592 138 0.2461 0.2978 REMARK 3 17 2.6058 - 2.5537 0.99 2559 144 0.2438 0.2941 REMARK 3 18 2.5537 - 2.5055 0.97 2612 119 0.2466 0.2962 REMARK 3 19 2.5055 - 2.4607 0.97 2559 126 0.2489 0.3676 REMARK 3 20 2.4607 - 2.4190 0.97 2540 138 0.2500 0.3290 REMARK 3 21 2.4190 - 2.3800 0.96 2542 140 0.2536 0.2840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6797 REMARK 3 ANGLE : 1.223 9261 REMARK 3 CHIRALITY : 0.083 1065 REMARK 3 PLANARITY : 0.005 1168 REMARK 3 DIHEDRAL : 14.502 2363 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3U9U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M (NH4)2SO4, 0.01M NICL2, 0.1M REMARK 280 TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.95000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.53000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.95000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.53000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 97.47500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.95000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.53000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 97.47500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.95000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.53000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 435 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 136 REMARK 465 SER A 137 REMARK 465 ALA A 138 REMARK 465 ALA A 139 REMARK 465 GLN A 140 REMARK 465 THR A 141 REMARK 465 GLU B 213 REMARK 465 CYS B 214 REMARK 465 GLY D 136 REMARK 465 SER D 137 REMARK 465 ALA D 138 REMARK 465 ALA D 139 REMARK 465 GLN D 140 REMARK 465 THR D 141 REMARK 465 ASN D 142 REMARK 465 SER D 143 REMARK 465 ASN E 212 REMARK 465 GLU E 213 REMARK 465 CYS E 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CE NZ REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 ASP B 1 CG OD1 OD2 REMARK 470 ASN B 157 CG OD1 ND2 REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 GLN D 1 CG CD OE1 NE2 REMARK 470 LYS D 5 CG CD CE NZ REMARK 470 LYS D 45 CE NZ REMARK 470 VAL D 192 CG1 CG2 REMARK 470 GLU D 200 CG CD OE1 OE2 REMARK 470 LYS D 217 CG CD CE NZ REMARK 470 LYS D 218 CG CD CE NZ REMARK 470 ILE D 219 CG1 CG2 CD1 REMARK 470 ASP E 1 CG OD1 OD2 REMARK 470 ASP E 143 CG OD1 OD2 REMARK 470 ASN E 145 CG OD1 ND2 REMARK 470 LYS E 149 CG CD CE NZ REMARK 470 GLN E 156 CG CD OE1 NE2 REMARK 470 LYS E 169 CG CD CE NZ REMARK 470 LYS E 183 CG CD CE NZ REMARK 470 ASP E 184 CG OD1 OD2 REMARK 470 GLU E 187 CG CD OE1 OE2 REMARK 470 THR E 197 OG1 CG2 REMARK 470 ASN E 210 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 342 O HOH D 351 2.13 REMARK 500 OD2 ASP E 110 NZ LYS E 199 2.17 REMARK 500 O ILE E 150 OG SER E 153 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ACE C 0 O - C - N ANGL. DEV. = -15.9 DEGREES REMARK 500 ACE F 0 O - C - N ANGL. DEV. = 15.0 DEGREES REMARK 500 LYS F 1 C - N - CA ANGL. DEV. = -20.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 15 -13.97 73.45 REMARK 500 LYS A 45 -168.05 -114.48 REMARK 500 LEU A 50 -62.33 -92.86 REMARK 500 ALA A 123 154.80 -48.15 REMARK 500 SER A 165 12.01 49.01 REMARK 500 ASP A 182 18.83 58.25 REMARK 500 PRO A 196 1.27 -58.69 REMARK 500 ALA B 51 -38.48 70.85 REMARK 500 TRP B 92 -138.82 -86.70 REMARK 500 GLN B 156 -30.05 -131.07 REMARK 500 SER D 15 -16.24 80.05 REMARK 500 LYS D 45 -162.08 -114.35 REMARK 500 ASN D 77 -15.43 82.76 REMARK 500 THR D 125 107.21 -41.82 REMARK 500 PRO D 196 32.17 -84.82 REMARK 500 GLU D 200 -157.43 -104.36 REMARK 500 ALA E 51 -39.31 65.02 REMARK 500 TRP E 92 -137.58 -89.95 REMARK 500 ASN E 190 -30.49 -131.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE F 0 and LYS F 1 DBREF 4YR6 A 1 221 PDB 4YR6 4YR6 1 221 DBREF 4YR6 B 1 214 PDB 4YR6 4YR6 1 214 DBREF 4YR6 C 0 10 PDB 4YR6 4YR6 0 10 DBREF 4YR6 D 1 221 PDB 4YR6 4YR6 1 221 DBREF 4YR6 E 1 214 PDB 4YR6 4YR6 1 214 DBREF 4YR6 F 0 10 PDB 4YR6 4YR6 0 10 SEQRES 1 A 221 GLN VAL THR LEU LYS GLU SER GLY PRO GLY ILE LEU GLN SEQRES 2 A 221 PRO SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY SEQRES 3 A 221 PHE SER LEU SER THR SER ASN MET GLY VAL VAL TRP ILE SEQRES 4 A 221 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU LEU HIS SEQRES 5 A 221 ILE LEU TRP ASN ASP GLY LYS PHE TYR ASN PRO ALA LEU SEQRES 6 A 221 LYS SER ARG LEU THR ILE SER LYS ASP THR TYR ASN ASN SEQRES 7 A 221 GLN VAL PHE LEU LYS ILE ALA ASN VAL ASP THR ALA ASP SEQRES 8 A 221 THR ALA THR TYR TYR CYS ALA ARG LEU PHE THR THR THR SEQRES 9 A 221 THR SER GLY TYR PHE ASP VAL TRP GLY ALA GLY THR THR SEQRES 10 A 221 VAL THR VAL SER SER ALA LYS THR THR PRO PRO SER VAL SEQRES 11 A 221 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 A 221 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 A 221 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 A 221 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 A 221 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 A 221 PRO ARG PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 A 221 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE ALA ALA SEQRES 1 B 214 ASP ILE GLN MET THR GLN SER PRO ALA SER LEU SER ALA SEQRES 2 B 214 SER VAL GLY GLU THR VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 214 GLY ASN ILE TYR ASN TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 B 214 GLN GLY LYS SER PRO GLN LEU LEU VAL TYR ASN ALA LYS SEQRES 5 B 214 THR LEU ALA ASP GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 214 GLY SER GLY THR GLN TYR SER LEU LYS ILE ASN SER LEU SEQRES 7 B 214 GLN PRO GLU ASP PHE GLY SER TYR PHE CYS GLN HIS PHE SEQRES 8 B 214 TRP ASP THR PRO TRP THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 B 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 B 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 B 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 B 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 B 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 B 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 B 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 B 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 B 214 PHE ASN ARG ASN GLU CYS SEQRES 1 C 11 ACE LYS LEU ARG GLY VAL LEU GLN GLY HIS LEU SEQRES 1 D 221 GLN VAL THR LEU LYS GLU SER GLY PRO GLY ILE LEU GLN SEQRES 2 D 221 PRO SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY SEQRES 3 D 221 PHE SER LEU SER THR SER ASN MET GLY VAL VAL TRP ILE SEQRES 4 D 221 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU LEU HIS SEQRES 5 D 221 ILE LEU TRP ASN ASP GLY LYS PHE TYR ASN PRO ALA LEU SEQRES 6 D 221 LYS SER ARG LEU THR ILE SER LYS ASP THR TYR ASN ASN SEQRES 7 D 221 GLN VAL PHE LEU LYS ILE ALA ASN VAL ASP THR ALA ASP SEQRES 8 D 221 THR ALA THR TYR TYR CYS ALA ARG LEU PHE THR THR THR SEQRES 9 D 221 THR SER GLY TYR PHE ASP VAL TRP GLY ALA GLY THR THR SEQRES 10 D 221 VAL THR VAL SER SER ALA LYS THR THR PRO PRO SER VAL SEQRES 11 D 221 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 D 221 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 D 221 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 D 221 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 D 221 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 D 221 PRO ARG PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 D 221 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE ALA ALA SEQRES 1 E 214 ASP ILE GLN MET THR GLN SER PRO ALA SER LEU SER ALA SEQRES 2 E 214 SER VAL GLY GLU THR VAL THR ILE THR CYS ARG ALA SER SEQRES 3 E 214 GLY ASN ILE TYR ASN TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 E 214 GLN GLY LYS SER PRO GLN LEU LEU VAL TYR ASN ALA LYS SEQRES 5 E 214 THR LEU ALA ASP GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 E 214 GLY SER GLY THR GLN TYR SER LEU LYS ILE ASN SER LEU SEQRES 7 E 214 GLN PRO GLU ASP PHE GLY SER TYR PHE CYS GLN HIS PHE SEQRES 8 E 214 TRP ASP THR PRO TRP THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 E 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 E 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 E 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 E 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 E 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 E 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 E 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 E 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 E 214 PHE ASN ARG ASN GLU CYS SEQRES 1 F 11 ACE LYS LEU ARG GLY VAL LEU GLN GLY HIS LEU HET ACE C 0 3 HET ACE F 0 3 HET GOL B 301 6 HET GOL E 301 6 HETNAM ACE ACETYL GROUP HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *290(H2 O) HELIX 1 AA1 ASN A 62 SER A 67 1 6 HELIX 2 AA2 ASP A 88 THR A 92 5 5 HELIX 3 AA3 SER A 165 SER A 167 5 3 HELIX 4 AA4 SER A 195 GLU A 200 1 6 HELIX 5 AA5 PRO A 209 SER A 212 5 4 HELIX 6 AA6 GLN B 79 PHE B 83 5 5 HELIX 7 AA7 SER B 121 SER B 127 1 7 HELIX 8 AA8 LYS B 183 ARG B 188 1 6 HELIX 9 AA9 GLY C 4 GLY C 8 5 5 HELIX 10 AB1 LEU D 65 SER D 67 5 3 HELIX 11 AB2 ASP D 88 THR D 92 5 5 HELIX 12 AB3 SER D 165 SER D 167 5 3 HELIX 13 AB4 SER D 195 GLU D 200 1 6 HELIX 14 AB5 PRO D 209 SER D 212 5 4 HELIX 15 AB6 GLN E 79 PHE E 83 5 5 HELIX 16 AB7 SER E 121 THR E 126 1 6 HELIX 17 AB8 ASP E 184 HIS E 189 1 6 HELIX 18 AB9 GLY F 4 GLY F 8 5 5 SHEET 1 AA1 4 THR A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 25 N THR A 3 SHEET 3 AA1 4 GLN A 79 ILE A 84 -1 O LEU A 82 N LEU A 20 SHEET 4 AA1 4 LEU A 69 ASP A 74 -1 N ASP A 74 O GLN A 79 SHEET 1 AA2 6 ILE A 11 LEU A 12 0 SHEET 2 AA2 6 THR A 116 VAL A 120 1 O THR A 119 N LEU A 12 SHEET 3 AA2 6 ALA A 93 THR A 103 -1 N TYR A 95 O THR A 116 SHEET 4 AA2 6 MET A 34 GLN A 41 -1 N ILE A 39 O TYR A 96 SHEET 5 AA2 6 GLU A 48 LEU A 54 -1 O LEU A 51 N TRP A 38 SHEET 6 AA2 6 LYS A 59 TYR A 61 -1 O PHE A 60 N HIS A 52 SHEET 1 AA3 4 ILE A 11 LEU A 12 0 SHEET 2 AA3 4 THR A 116 VAL A 120 1 O THR A 119 N LEU A 12 SHEET 3 AA3 4 ALA A 93 THR A 103 -1 N TYR A 95 O THR A 116 SHEET 4 AA3 4 SER A 106 TRP A 112 -1 O SER A 106 N THR A 103 SHEET 1 AA4 4 SER A 129 LEU A 133 0 SHEET 2 AA4 4 MET A 144 TYR A 154 -1 O LEU A 150 N TYR A 131 SHEET 3 AA4 4 TYR A 184 PRO A 193 -1 O LEU A 186 N VAL A 151 SHEET 4 AA4 4 VAL A 172 THR A 174 -1 N HIS A 173 O SER A 189 SHEET 1 AA5 4 SER A 129 LEU A 133 0 SHEET 2 AA5 4 MET A 144 TYR A 154 -1 O LEU A 150 N TYR A 131 SHEET 3 AA5 4 TYR A 184 PRO A 193 -1 O LEU A 186 N VAL A 151 SHEET 4 AA5 4 VAL A 178 LEU A 179 -1 N VAL A 178 O THR A 185 SHEET 1 AA6 3 THR A 160 TRP A 163 0 SHEET 2 AA6 3 THR A 203 HIS A 208 -1 O ASN A 205 N THR A 162 SHEET 3 AA6 3 THR A 213 LYS A 218 -1 O VAL A 215 N VAL A 206 SHEET 1 AA7 4 MET B 4 SER B 7 0 SHEET 2 AA7 4 VAL B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AA7 4 GLN B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AA7 4 PHE B 62 SER B 67 -1 N SER B 63 O LYS B 74 SHEET 1 AA8 6 SER B 10 ALA B 13 0 SHEET 2 AA8 6 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA8 6 GLY B 84 HIS B 90 -1 N GLY B 84 O LEU B 104 SHEET 4 AA8 6 LEU B 33 GLN B 38 -1 N GLN B 38 O SER B 85 SHEET 5 AA8 6 GLN B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA8 6 THR B 53 LEU B 54 -1 O THR B 53 N TYR B 49 SHEET 1 AA9 4 THR B 114 PHE B 118 0 SHEET 2 AA9 4 GLY B 129 PHE B 139 -1 O PHE B 135 N SER B 116 SHEET 3 AA9 4 TYR B 173 THR B 182 -1 O LEU B 179 N VAL B 132 SHEET 4 AA9 4 VAL B 159 TRP B 163 -1 N LEU B 160 O THR B 178 SHEET 1 AB1 4 SER B 153 ARG B 155 0 SHEET 2 AB1 4 ASN B 145 ILE B 150 -1 N ILE B 150 O SER B 153 SHEET 3 AB1 4 SER B 191 THR B 197 -1 O THR B 197 N ASN B 145 SHEET 4 AB1 4 ILE B 205 ASN B 210 -1 O ILE B 205 N ALA B 196 SHEET 1 AB2 4 THR D 3 SER D 7 0 SHEET 2 AB2 4 LEU D 18 SER D 25 -1 O THR D 21 N SER D 7 SHEET 3 AB2 4 GLN D 79 ILE D 84 -1 O LEU D 82 N LEU D 20 SHEET 4 AB2 4 LEU D 69 ASP D 74 -1 N ASP D 74 O GLN D 79 SHEET 1 AB3 6 ILE D 11 LEU D 12 0 SHEET 2 AB3 6 THR D 116 VAL D 120 1 O THR D 119 N LEU D 12 SHEET 3 AB3 6 ALA D 93 THR D 103 -1 N TYR D 95 O THR D 116 SHEET 4 AB3 6 MET D 34 GLN D 41 -1 N ILE D 39 O TYR D 96 SHEET 5 AB3 6 GLU D 48 LEU D 54 -1 O LEU D 51 N TRP D 38 SHEET 6 AB3 6 LYS D 59 TYR D 61 -1 O PHE D 60 N HIS D 52 SHEET 1 AB4 4 ILE D 11 LEU D 12 0 SHEET 2 AB4 4 THR D 116 VAL D 120 1 O THR D 119 N LEU D 12 SHEET 3 AB4 4 ALA D 93 THR D 103 -1 N TYR D 95 O THR D 116 SHEET 4 AB4 4 SER D 106 TRP D 112 -1 O TYR D 108 N PHE D 101 SHEET 1 AB5 4 SER D 129 LEU D 133 0 SHEET 2 AB5 4 VAL D 145 TYR D 154 -1 O LEU D 150 N TYR D 131 SHEET 3 AB5 4 LEU D 183 VAL D 192 -1 O VAL D 192 N VAL D 145 SHEET 4 AB5 4 VAL D 172 THR D 174 -1 N HIS D 173 O SER D 189 SHEET 1 AB6 4 SER D 129 LEU D 133 0 SHEET 2 AB6 4 VAL D 145 TYR D 154 -1 O LEU D 150 N TYR D 131 SHEET 3 AB6 4 LEU D 183 VAL D 192 -1 O VAL D 192 N VAL D 145 SHEET 4 AB6 4 VAL D 178 GLN D 180 -1 N GLN D 180 O LEU D 183 SHEET 1 AB7 3 THR D 160 TRP D 163 0 SHEET 2 AB7 3 THR D 203 HIS D 208 -1 O ASN D 205 N THR D 162 SHEET 3 AB7 3 THR D 213 LYS D 218 -1 O THR D 213 N HIS D 208 SHEET 1 AB8 4 MET E 4 SER E 7 0 SHEET 2 AB8 4 VAL E 19 ALA E 25 -1 O ARG E 24 N THR E 5 SHEET 3 AB8 4 GLN E 70 ILE E 75 -1 O TYR E 71 N CYS E 23 SHEET 4 AB8 4 PHE E 62 SER E 67 -1 N SER E 63 O LYS E 74 SHEET 1 AB9 6 SER E 10 ALA E 13 0 SHEET 2 AB9 6 THR E 102 ILE E 106 1 O GLU E 105 N LEU E 11 SHEET 3 AB9 6 GLY E 84 HIS E 90 -1 N GLY E 84 O LEU E 104 SHEET 4 AB9 6 LEU E 33 GLN E 38 -1 N TYR E 36 O PHE E 87 SHEET 5 AB9 6 GLN E 45 TYR E 49 -1 O LEU E 47 N TRP E 35 SHEET 6 AB9 6 THR E 53 LEU E 54 -1 O THR E 53 N TYR E 49 SHEET 1 AC1 4 THR E 114 PHE E 118 0 SHEET 2 AC1 4 GLY E 129 PHE E 139 -1 O ASN E 137 N THR E 114 SHEET 3 AC1 4 TYR E 173 THR E 182 -1 O LEU E 181 N ALA E 130 SHEET 4 AC1 4 VAL E 159 TRP E 163 -1 N LEU E 160 O THR E 178 SHEET 1 AC2 4 GLU E 154 ARG E 155 0 SHEET 2 AC2 4 ASN E 145 ILE E 150 -1 N TRP E 148 O ARG E 155 SHEET 3 AC2 4 SER E 191 THR E 197 -1 O THR E 193 N LYS E 149 SHEET 4 AC2 4 ILE E 205 ASN E 210 -1 O LYS E 207 N CYS E 194 SSBOND 1 CYS A 22 CYS A 97 1555 1555 2.09 SSBOND 2 CYS A 149 CYS A 204 1555 1555 2.05 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.04 SSBOND 4 CYS B 134 CYS B 194 1555 1555 2.03 SSBOND 5 CYS D 22 CYS D 97 1555 1555 2.12 SSBOND 6 CYS D 149 CYS D 204 1555 1555 2.04 SSBOND 7 CYS E 23 CYS E 88 1555 1555 2.04 SSBOND 8 CYS E 134 CYS E 194 1555 1555 2.03 LINK C ACE C 0 N LYS C 1 1555 1555 1.34 LINK C ACE F 0 N LYS F 1 1555 1555 1.34 CISPEP 1 PHE A 155 PRO A 156 0 3.09 CISPEP 2 GLU A 157 PRO A 158 0 1.11 CISPEP 3 ARG A 197 PRO A 198 0 6.21 CISPEP 4 SER B 7 PRO B 8 0 -2.91 CISPEP 5 THR B 94 PRO B 95 0 1.71 CISPEP 6 TYR B 140 PRO B 141 0 -0.66 CISPEP 7 PHE D 155 PRO D 156 0 -9.75 CISPEP 8 GLU D 157 PRO D 158 0 6.49 CISPEP 9 ARG D 197 PRO D 198 0 -1.89 CISPEP 10 SER E 7 PRO E 8 0 -3.79 CISPEP 11 THR E 94 PRO E 95 0 0.85 CISPEP 12 TYR E 140 PRO E 141 0 4.71 SITE 1 AC1 2 PRO B 8 ALA B 9 SITE 1 AC2 5 SER E 7 PRO E 8 ALA E 9 SER E 10 SITE 2 AC2 5 HOH E 415 SITE 1 AC3 7 THR D 104 TYR E 30 TYR E 32 TRP E 92 SITE 2 AC3 7 LEU F 2 ARG F 3 HOH F 102 CRYST1 101.900 147.060 194.950 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005130 0.00000